BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14480.1
Length=1464
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493458 jgi|Araly1|493458|fgenesh2_kg.7__2891__AT4G14480.1 2200 0.0
> Ahg493458 jgi|Araly1|493458|fgenesh2_kg.7__2891__AT4G14480.1
Length=1431
Score = 2200 bits (1191), Expect = 0.0
Identities = 1351/1428 (95%), Gaps = 11/1428 (1%)
Strand=Plus/Plus
Query 1 ATGGCTCGGAACAAGCTCGAGTTCCCTCTTGATGCTGAAGCCTACGAGATCATCTGCAAG 60
||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGGCTCGGAACAAGATCGAATTCCCTCTTGATGCTGAGGCCTACGAGATCATCTGCAAG 60
Query 61 ATAGGCGTTGGTGTTAGTGCTTCGGTCTACAAGGCCATATGCATTCCGATGAACTCAATG 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATAGGCGTTGGTGTTAGTGCCTCGGTCTACAAGGCCATATGCATTCCGATGAACTCAATG 120
Query 121 GTAGTTGCTATCAAAGCCATCGATCTTGATCAGTCGCGGGCTGACTTTGACAGTCTTCGC 180
||||||||||||||||| ||||||||||||||||| || ||||| |||||||||||||||
Sbjct 121 GTAGTTGCTATCAAAGCAATCGATCTTGATCAGTCACGAGCTGATTTTGACAGTCTTCGC 180
Query 181 CGTGAAACCAAGACGATGTCTCTGCTTTCTCATCCGAATATTCTCAATGCTTATTGTTCA 240
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 181 CGTGAAACCAAGACGATGTCTCTGCTTTCTCACCCGAATATCCTCAATGCTTATTGTTCA 240
Query 241 TTCACCGTTGATCGATGTCTCTGGGTGGTTATGCCATTCATGTCTTGTGGCTCTCTTCAT 300
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 241 TTCACCGTTGATCGATGTCTTTGGGTGGTTATGCCTTTCATGTCTTGTGGCTCTCTTCAT 300
Query 301 TCGATCGTCTCTTCGTCTTT-TCCAAGTGGGTTACCAGAAAACTGCATTTCCGTCTTCCT 359
|| || |||||||| ||||| |||| ||| ||||| |||||||||||||||||||||||
Sbjct 301 TCCATTGTCTCTTCTTCTTTCCCCAA-TGGTTTACCGGAAAACTGCATTTCCGTCTTCCT 359
Query 360 CAAGGAAACTCTGAA-TGCAATCTCGTATCTTCACGATCAGGGTCATTTGCACCGTGACA 418
||||||||| || || ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 360 CAAGGAAACCCT-AAGTGCAATCTCGTATCTTCACGATCAGGGTCATTTGCACCGGGACA 418
Query 419 TCAAGGCAGGTAACATTCTGGTAGATTCTGATGGATCCGTGAAGCTCGCTGATTTCGGAG 478
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TCAAGGCCGGTAACATTCTAGTAGATTCTGATGGATCCGTGAAGCTCGCTGATTTCGGAG 478
Query 479 TATCTGCATCCATCTATGAACCCGTGACATCTTCCTCTGGAACAACATCTTCTTCTTTAA 538
|||| ||||| ||||||||||| |||||||| |||||||||||||||||||| |||||||
Sbjct 479 TATCCGCATCGATCTATGAACCTGTGACATCCTCCTCTGGAACAACATCTTCGTCTTTAA 538
Query 539 GGTTAACTGATATAGCGGGAACACCGTATTGGATGGCTCCGGAAGTGGTTCATTCCCACA 598
||||||||||||||||||||||||| || ||||||||||||||||| ||||| || ||||
Sbjct 539 GGTTAACTGATATAGCGGGAACACCCTACTGGATGGCTCCGGAAGTAGTTCACTCTCACA 598
Query 599 CAGGGTATGGTTTCAAAGCAGACATTTGGTCTTTCGGGATAACAGCGTTGGAGTTAGCAC 658
|||| || ||||||||||||||||||||||| ||||||||||| || |||||||||||||
Sbjct 599 CAGGATACGGTTTCAAAGCAGACATTTGGTCATTCGGGATAACGGCTTTGGAGTTAGCAC 658
Query 659 ATGGAAGACCTCCGTTATCTCACTTACCGCCGTTGAAGAGTCTGCTCATGAAGATCACCA 718
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 ACGGGAGACCTCCGTTATCTCACTTACCGCCGTTGAAGAGTCTGCTCATGAAGATCACCA 718
Query 719 AAAGGTTTCATTTTTCTGATTACGAGATCAATACGAGCGGAAGCAGCAAAAAGGGTAACA 778
|||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 719 AAAGGTTTCATTTTGCTGATTACGAGATCAATACAAGTGGAAGCAGCAAAAAGGGTAACA 778
Query 779 AGAAGTTCTCAAAAGCTTTTAGAGAAATGGTTGGTTTGTGTCTAGAGCAAGATCCTACTA 838
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 779 AGAAGTTCTCAAAAGCTTTTAGAGAAATGGTTGGTTTGTGTCTAGAGCAAGATCCTGCTA 838
Query 839 AAAGACCATCGGCAGAGAAGTTGTTGAAGCATCCTTTTTTCAAGAACTGTAAAGGACTCG 898
|||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 839 AAAGACCATCTGCAGAGAAGTTGTTGAAGCATCCTTTCTTCAAGAATTGTAAAGGACTCG 898
Query 899 ACTTTGTGGTCAAGAACGTGTTGCATAGCTTGTCAAACGCAGAGCAGATGTTTATGGAGA 958
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 899 ACTTTGTGGTCAAGAACGTGTTGCATAGCTTGTCAAATGCAGAGCAGATGTTTATGGAGA 958
Query 959 GTCAGATTTTGATCAAGAGTGTTGGAGATGATGATgaagaagaagaagaagaagacgaag 1018
||||||||||||| ||||||||| | || |||||||||||||| ||||||||||| |||
Sbjct 959 GTCAGATTTTGATGAAGAGTGTT-G-GA-GATGATGAAGAAGACGAAGAAGAAGATGAAA 1015
Query 1019 agatagtgaagaatagaagaaTCAGTGGGTGGAATTTCCGTGAAGACGATCTCCAACTTA 1078
||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1016 AGATAGTGAAGAACAGGAGAATCAGTGGGTGGAATTTCCGTGAAGAGGATCTCCAACTTA 1075
Query 1079 GTCCAGTGTTCCCAGCTACTGAATCAGACT-CTTCTGAGTCCAGTCCACGTGAAGAAGAT 1137
|||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||
Sbjct 1076 GTCCAGTGTTCCCAGCTACTGATTCAGA-TACTTCTGAGTCCAGTCCACGTGAAGAAGAT 1134
Query 1138 CA-ATCAAAAGACAAAAAGGAAGACGATAACGTCACAATAACGGGGTATGAACTCGGTTT 1196
|| ||| |||||||| ||||||||||||||||||||||||| || | ||||||||||||
Sbjct 1135 CACATC-CAAGACAAACAGGAAGACGATAACGTCACAATAACCGGATCTGAACTCGGTTT 1193
Query 1197 AGGTTTGTCGAACGAGGAAGCTAAGAACCAAGAAGGTGAGGTTGTTGGGTTTGATAAAGA 1256
||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 1194 AGGTTTGTCAAACGAGGAAGCTAAGAACCAAGAAGGTGAGGTTGTAGGGTTTGATAGAGA 1253
Query 1257 TTTGGTGTTAGAGAAACTGAAAGTGTTGAAGAAAAGTTTAGAGCATCAAAGAGCAAGAGT 1316
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1254 TTTGGTGTTAGAGAAACTGAAAGTGTTGAAGAAAAGTTTAGAGCATCAAAGAGCGAGAGT 1313
Query 1317 GTCGATTATAATCGAAGCATTGAGTGGGGACAAGGAAGAGAAGAGCAGAGAAGAAGAGCT 1376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 GTCGATTATAATCGAAGCATTGAGTGGGGACAAGGAAGAGAAGAGCAGAGAAGAAGAGCT 1373
Query 1377 TCTAGAGATGGTGGAGAAGTTAAAGATTGAATTGGAAACTGAGAAGCT 1424
||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 1374 TCTAGAGATGGTGGAGAAGTTGAAGATTGAATTGGAAGCTGAGAAGCT 1421
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54773772310
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5