BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G14490.1 Length=1482 Score E Sequences producing significant alignments: (Bits) Value Ahg493457 jgi|Araly1|493457|fgenesh2_kg.7__2890__AT4G14490.1 819 0.0 > Ahg493457 jgi|Araly1|493457|fgenesh2_kg.7__2890__AT4G14490.1 Length=1309 Score = 819 bits (443), Expect = 0.0 Identities = 619/699 (89%), Gaps = 31/699 (4%) Strand=Plus/Plus Query 695 AAGAAGATTGAAGAAAGTGTAGGAAAAGCTTGTTTGGGAGTGGTTAATGTAGAGAAGGTA 754 ||||||||| |||||||| |||||| ||||||||||||| ||| |||||||||||| | Sbjct 635 AAGAAGATT---GAAAGTGTTGGAAAATCTTGTTTGGGAGTTGTTGATGTAGAGAAGG-A 690 Query 755 -G-AGACTTTAAAGGAGAAGAGGATTACTAGGGCTACAAGAAGCAAGAAGATTGATATTG 812 | || |||||||||||||||||| ||| |||||||| |||||||||||||||||||||| Sbjct 691 GGAAG-CTTTAAAGGAGAAGAGGACTACAAGGGCTACCAGAAGCAAGAAGATTGATATTG 749 Query 813 TTGGAGATTCTTATTTGGAATTGGACATGGTTCTAAATCGAGCCAGAAAGAACAAAGGGA 872 |||||||| |||||||||||||||| |||||| |||| | ||| ||||||||||| |||| Sbjct 750 TTGGAGATCCTTATTTGGAATTGGAGATGGTTTTAAACCAAGCTAGAAAGAACAATGGGA 809 Query 873 AGAACAAGAAAGCGGATCAGAAGCCG-TTGAAGAGCTTTGAAAATGATGAGGTTACTGAT 931 ||||||||||||| || || ||| || ||||||||||||||| ||||||||||||||||| Sbjct 810 AGAACAAGAAAGCAGAGCATAAG-CGATTGAAGAGCTTTGAAGATGATGAGGTTACTGAT 868 Query 932 TCAGGAGAGCAGGGTTTAAGCTGTCATGTTGAAGAAGATATGAACAATGAACTTGATACA 991 || |||||||||| |||||| |||| |||||||||||||||||| ||||||||||||||| Sbjct 869 TCTGGAGAGCAGGATTTAAGTTGTCCTGTTGAAGAAGATATGAAGAATGAACTTGATACA 928 Query 992 GATCTAAGAAAGATGACATTAGGAGCATTGTTCAGTTTTCTGGAGGGTCATCTGTCAAAA 1051 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 929 GATCTAAGAAAGATGACATTAGGAGCATTGTTCAGTTTTCTGGAGGGTCATCTGTCAAAA 988 Query 1052 GAGATAATTCACAAGACAGAAAATATGATTGAGCCCATGCGAAGTAAAACTCAGAGAGTT 1111 | ||||| | | ||||||||| |||||||||||| |||||||||||||||||||||||| Sbjct 989 GGGATAAATAATGAGACAGAAAGTATGATTGAGCCTATGCGAAGTAAAACTCAGAGAGTT 1048 Query 1112 CGTGAGTATATTTCAGATCAAAGAAAAGTTCAGGCTAAAGCGTGTATGTGTTGAATTGAC 1171 |||||| | || | || ||||| |||||||||||| ||||||||||||| Sbjct 1049 CGTGAG-A-------GA--A--GA---GTTCAAGCTAAAGCGTGTGTGTGTTGAATTGAA 1093 Query 1172 AAAGTGTCCAACTGATATGGTGCACAC-TGAT-TATTGGTATAGCTTCAGTTCATGGAAT 1229 ||||||| |||||||||||||| |||| | || | |||||||||||||| |||||| ||| Sbjct 1094 AAAGTGTGCAACTGATATGGTGGACACCT-ATGT-TTGGTATAGCTTCACTTCATGAAAT 1151 Query 1230 AAGAAACACATACTGACAGGTACAAGTTT-CTTATGAAGTAGAC-CTTAATGCTGTGGGA 1287 ||||| |||||||||| |||||||||||| ||||||| || || |||||||||||||| Sbjct 1152 AAGAAGCACATACTGATAGGTACAAGTTTTCTTATGATGT-GAATCTTAATGCTGTGGGC 1210 Query 1288 TTGGCTGTGTTGCTTAGAGTTTTGACTGCATTGATTTACTTGCATTTGCTTTACGTGTGA 1347 ||||||||||| |||||||||||||||||| |||||||||||| ||| |||| ||||||| Sbjct 1211 TTGGCTGTGTTACTTAGAGTTTTGACTGCAATGATTTACTTGCGTTTTCTTTGCGTGTGA 1270 Query 1348 GACAAAGTAAACAGTGAAGTGCTGATGTTTAAGTAGGTT 1386 ||||||||||||| |||||||||||||||| |||||||| Sbjct 1271 GACAAAGTAAACATTGAAGTGCTGATGTTTGAGTAGGTT 1309 Score = 542 bits (293), Expect = 3e-153 Identities = 376/416 (90%), Gaps = 6/416 (1%) Strand=Plus/Plus Query 1 AACAATGGTTACGCCATCGTTGAGATTAGTATTCGTCAAGGGTCCAAGAGAAGGCGATGC 60 |||||||| ||||||||||||||| || |||||||||||||||||||| |||||||||| Sbjct 1 AACAATGGATACGCCATCGTTGAGGCTACTATTCGTCAAGGGTCCAAGAAAAGGCGATGC 60 Query 61 TCTAGATTACAAGCCTGGATCTACGATTCGTGTTGGTCGAATCGTTCGTGGTAATGAAAT 120 |||||| ||||| | ||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TCTAGAGTACAAACTTGGGTCTACGATTCGTGTTGGTCGAATCGTTCGTGGTAATGAAAT 120 Query 121 CGCAATTAAAGACGCTGGAATCTCCACTAAGCATCT-TCGGATCGAATCGGATTCTGGGA 179 ||| |||||||||||||||||||| ||||||||||| | |||||| ||||| |||||||| Sbjct 121 CGCCATTAAAGACGCTGGAATCTCTACTAAGCATCTCT-GGATCGGATCGGTTTCTGGGA 179 Query 180 ATTGGGTAATACAAGATCTTGGATCTTCCAACGGTACTTTATTGAATTCGAATGCTCTTG 239 ||||||| | ||||||||||||||||||||||| ||||||||||| ||||| | ||||| Sbjct 180 ATTGGGTGGTTCAAGATCTTGGATCTTCCAACGGCACTTTATTGAACTCGAAGGATCTTG 239 Query 240 ATCCAGAGACGTCGGTAAATCTCGGAGATGGCGATGTTATCAAACTAGGTGAGTATACAT 299 |||| |||||| |||| ||||||||||||||||||||||| || | ||||||||||||| Sbjct 240 ATCCGGAGACGCCGGTGGATCTCGGAGATGGCGATGTTATCGAATTCGGTGAGTATACAT 299 Query 300 CTATTTTGGTGAATTTTGTGATTGATGAT-TTTCAGGAGAAGAAGCTTACGAGGAACAAT 358 ||||| ||||||||||||||||||||||| ||| |||| |||||| | ||||||||||| Sbjct 300 CTATTGTGGTGAATTTTGTGATTGATGATGTTTT-GGAGGAGAAGCCTCCGAGGAACAAT 358 Query 359 AGGCGTCAGGCTAATGCGAGGAAGCGAATTAGGGTTT-TAGAAAGTATCAATTTGG 413 |||||||||||||||||||| |||||||||||||||| | ||||||| |||||||| Sbjct 359 AGGCGTCAGGCTAATGCGAGAAAGCGAATTAGGGTTTCT-GAAAGTAGCAATTTGG 413 Score = 250 bits (135), Expect = 2e-65 Identities = 204/236 (86%), Gaps = 9/236 (4%) Strand=Plus/Plus Query 439 TTTGGATGTGAAATTTGAGAACAAGCCGAGTTCTAGGGTTAGGAAAGTTAGGAAAATCGA 498 ||||||||||||| ||| || |||||||||||||||||||||||||||||||| ||||| Sbjct 409 TTTGGATGTGAAAATTGCGAGTAAGCCGAGTTCTAGGGTTAGGAAAGTTAGGAAGATCGA 468 Query 499 GGATTCGGAGAAATTAGGGATTACTGATGGATTACAAGAGGA--T-CTGGTGGAGAAAAA 555 |||||| |||||||||||| |||||||||||||| || |||| | ||||| |||||||| Sbjct 469 GGATTCTGAGAAATTAGGGGTTACTGATGGATTAGAAAAGGAACTTCTGGTAGAGAAAAA 528 Query 556 TGG-AAGCTTTAGGAATGTTGAAAGTATTCAGAGTTCATCTGTAAACTTAATTAAGGTTG 614 || || ||||||||||||||||||||| |||||||||| ||| |||| | |||| || | Sbjct 529 -GGTAAACTTTAGGAATGTTGAAAGTATCCAGAGTTCATGTGTGAACTCAGTTAAAGT-G 586 Query 615 AAA-TGGAGGATTGTG-CAATGGTGGAGGAAAATTTAGGGAGGGGATTGAAGAAGA 668 ||| | ||||||| | |||||| |||||||||| |||||||||| ||||||||| Sbjct 587 AAAATTGAGGATT-TAACAATGGCAGAGGAAAATTCAGGGAGGGGAGTGAAGAAGA 641 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55459396720 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5