BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14490.1
Length=1482
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493457 jgi|Araly1|493457|fgenesh2_kg.7__2890__AT4G14490.1 819 0.0
> Ahg493457 jgi|Araly1|493457|fgenesh2_kg.7__2890__AT4G14490.1
Length=1309
Score = 819 bits (443), Expect = 0.0
Identities = 619/699 (89%), Gaps = 31/699 (4%)
Strand=Plus/Plus
Query 695 AAGAAGATTGAAGAAAGTGTAGGAAAAGCTTGTTTGGGAGTGGTTAATGTAGAGAAGGTA 754
||||||||| |||||||| |||||| ||||||||||||| ||| |||||||||||| |
Sbjct 635 AAGAAGATT---GAAAGTGTTGGAAAATCTTGTTTGGGAGTTGTTGATGTAGAGAAGG-A 690
Query 755 -G-AGACTTTAAAGGAGAAGAGGATTACTAGGGCTACAAGAAGCAAGAAGATTGATATTG 812
| || |||||||||||||||||| ||| |||||||| ||||||||||||||||||||||
Sbjct 691 GGAAG-CTTTAAAGGAGAAGAGGACTACAAGGGCTACCAGAAGCAAGAAGATTGATATTG 749
Query 813 TTGGAGATTCTTATTTGGAATTGGACATGGTTCTAAATCGAGCCAGAAAGAACAAAGGGA 872
|||||||| |||||||||||||||| |||||| |||| | ||| ||||||||||| ||||
Sbjct 750 TTGGAGATCCTTATTTGGAATTGGAGATGGTTTTAAACCAAGCTAGAAAGAACAATGGGA 809
Query 873 AGAACAAGAAAGCGGATCAGAAGCCG-TTGAAGAGCTTTGAAAATGATGAGGTTACTGAT 931
||||||||||||| || || ||| || ||||||||||||||| |||||||||||||||||
Sbjct 810 AGAACAAGAAAGCAGAGCATAAG-CGATTGAAGAGCTTTGAAGATGATGAGGTTACTGAT 868
Query 932 TCAGGAGAGCAGGGTTTAAGCTGTCATGTTGAAGAAGATATGAACAATGAACTTGATACA 991
|| |||||||||| |||||| |||| |||||||||||||||||| |||||||||||||||
Sbjct 869 TCTGGAGAGCAGGATTTAAGTTGTCCTGTTGAAGAAGATATGAAGAATGAACTTGATACA 928
Query 992 GATCTAAGAAAGATGACATTAGGAGCATTGTTCAGTTTTCTGGAGGGTCATCTGTCAAAA 1051
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 929 GATCTAAGAAAGATGACATTAGGAGCATTGTTCAGTTTTCTGGAGGGTCATCTGTCAAAA 988
Query 1052 GAGATAATTCACAAGACAGAAAATATGATTGAGCCCATGCGAAGTAAAACTCAGAGAGTT 1111
| ||||| | | ||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 989 GGGATAAATAATGAGACAGAAAGTATGATTGAGCCTATGCGAAGTAAAACTCAGAGAGTT 1048
Query 1112 CGTGAGTATATTTCAGATCAAAGAAAAGTTCAGGCTAAAGCGTGTATGTGTTGAATTGAC 1171
|||||| | || | || ||||| |||||||||||| |||||||||||||
Sbjct 1049 CGTGAG-A-------GA--A--GA---GTTCAAGCTAAAGCGTGTGTGTGTTGAATTGAA 1093
Query 1172 AAAGTGTCCAACTGATATGGTGCACAC-TGAT-TATTGGTATAGCTTCAGTTCATGGAAT 1229
||||||| |||||||||||||| |||| | || | |||||||||||||| |||||| |||
Sbjct 1094 AAAGTGTGCAACTGATATGGTGGACACCT-ATGT-TTGGTATAGCTTCACTTCATGAAAT 1151
Query 1230 AAGAAACACATACTGACAGGTACAAGTTT-CTTATGAAGTAGAC-CTTAATGCTGTGGGA 1287
||||| |||||||||| |||||||||||| ||||||| || || ||||||||||||||
Sbjct 1152 AAGAAGCACATACTGATAGGTACAAGTTTTCTTATGATGT-GAATCTTAATGCTGTGGGC 1210
Query 1288 TTGGCTGTGTTGCTTAGAGTTTTGACTGCATTGATTTACTTGCATTTGCTTTACGTGTGA 1347
||||||||||| |||||||||||||||||| |||||||||||| ||| |||| |||||||
Sbjct 1211 TTGGCTGTGTTACTTAGAGTTTTGACTGCAATGATTTACTTGCGTTTTCTTTGCGTGTGA 1270
Query 1348 GACAAAGTAAACAGTGAAGTGCTGATGTTTAAGTAGGTT 1386
||||||||||||| |||||||||||||||| ||||||||
Sbjct 1271 GACAAAGTAAACATTGAAGTGCTGATGTTTGAGTAGGTT 1309
Score = 542 bits (293), Expect = 3e-153
Identities = 376/416 (90%), Gaps = 6/416 (1%)
Strand=Plus/Plus
Query 1 AACAATGGTTACGCCATCGTTGAGATTAGTATTCGTCAAGGGTCCAAGAGAAGGCGATGC 60
|||||||| ||||||||||||||| || |||||||||||||||||||| ||||||||||
Sbjct 1 AACAATGGATACGCCATCGTTGAGGCTACTATTCGTCAAGGGTCCAAGAAAAGGCGATGC 60
Query 61 TCTAGATTACAAGCCTGGATCTACGATTCGTGTTGGTCGAATCGTTCGTGGTAATGAAAT 120
|||||| ||||| | ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTAGAGTACAAACTTGGGTCTACGATTCGTGTTGGTCGAATCGTTCGTGGTAATGAAAT 120
Query 121 CGCAATTAAAGACGCTGGAATCTCCACTAAGCATCT-TCGGATCGAATCGGATTCTGGGA 179
||| |||||||||||||||||||| ||||||||||| | |||||| ||||| ||||||||
Sbjct 121 CGCCATTAAAGACGCTGGAATCTCTACTAAGCATCTCT-GGATCGGATCGGTTTCTGGGA 179
Query 180 ATTGGGTAATACAAGATCTTGGATCTTCCAACGGTACTTTATTGAATTCGAATGCTCTTG 239
||||||| | ||||||||||||||||||||||| ||||||||||| ||||| | |||||
Sbjct 180 ATTGGGTGGTTCAAGATCTTGGATCTTCCAACGGCACTTTATTGAACTCGAAGGATCTTG 239
Query 240 ATCCAGAGACGTCGGTAAATCTCGGAGATGGCGATGTTATCAAACTAGGTGAGTATACAT 299
|||| |||||| |||| ||||||||||||||||||||||| || | |||||||||||||
Sbjct 240 ATCCGGAGACGCCGGTGGATCTCGGAGATGGCGATGTTATCGAATTCGGTGAGTATACAT 299
Query 300 CTATTTTGGTGAATTTTGTGATTGATGAT-TTTCAGGAGAAGAAGCTTACGAGGAACAAT 358
||||| ||||||||||||||||||||||| ||| |||| |||||| | |||||||||||
Sbjct 300 CTATTGTGGTGAATTTTGTGATTGATGATGTTTT-GGAGGAGAAGCCTCCGAGGAACAAT 358
Query 359 AGGCGTCAGGCTAATGCGAGGAAGCGAATTAGGGTTT-TAGAAAGTATCAATTTGG 413
|||||||||||||||||||| |||||||||||||||| | ||||||| ||||||||
Sbjct 359 AGGCGTCAGGCTAATGCGAGAAAGCGAATTAGGGTTTCT-GAAAGTAGCAATTTGG 413
Score = 250 bits (135), Expect = 2e-65
Identities = 204/236 (86%), Gaps = 9/236 (4%)
Strand=Plus/Plus
Query 439 TTTGGATGTGAAATTTGAGAACAAGCCGAGTTCTAGGGTTAGGAAAGTTAGGAAAATCGA 498
||||||||||||| ||| || |||||||||||||||||||||||||||||||| |||||
Sbjct 409 TTTGGATGTGAAAATTGCGAGTAAGCCGAGTTCTAGGGTTAGGAAAGTTAGGAAGATCGA 468
Query 499 GGATTCGGAGAAATTAGGGATTACTGATGGATTACAAGAGGA--T-CTGGTGGAGAAAAA 555
|||||| |||||||||||| |||||||||||||| || |||| | ||||| ||||||||
Sbjct 469 GGATTCTGAGAAATTAGGGGTTACTGATGGATTAGAAAAGGAACTTCTGGTAGAGAAAAA 528
Query 556 TGG-AAGCTTTAGGAATGTTGAAAGTATTCAGAGTTCATCTGTAAACTTAATTAAGGTTG 614
|| || ||||||||||||||||||||| |||||||||| ||| |||| | |||| || |
Sbjct 529 -GGTAAACTTTAGGAATGTTGAAAGTATCCAGAGTTCATGTGTGAACTCAGTTAAAGT-G 586
Query 615 AAA-TGGAGGATTGTG-CAATGGTGGAGGAAAATTTAGGGAGGGGATTGAAGAAGA 668
||| | ||||||| | |||||| |||||||||| |||||||||| |||||||||
Sbjct 587 AAAATTGAGGATT-TAACAATGGCAGAGGAAAATTCAGGGAGGGGAGTGAAGAAGA 641
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55459396720
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5