BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14500.1
Length=1768
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493456 jgi|Araly1|493456|fgenesh2_kg.7__2889__AT4G14500.1 2388 0.0
> Ahg493456 jgi|Araly1|493456|fgenesh2_kg.7__2889__AT4G14500.1
Length=1711
Score = 2388 bits (1293), Expect = 0.0
Identities = 1622/1769 (92%), Gaps = 69/1769 (4%)
Strand=Plus/Plus
Query 10 AATCACCAAACTCAATTAAATaaaaagaaaaaaaTTATTATTATCCcttcttcttcttct 69
||||||||||||||||||||| | |||| || |||| | | ||| || ||||||
Sbjct 2 AATCACCAAACTCAATTAAAT----A-AAAACAA--ATTA-T-T--CTT-ATC-TCTTCT 48
Query 70 tcgtcttcgtcttTGATTCTCCTGATTCATGTCGCTTAAATTTTTAG-CGATCTTC-GAA 127
||||||||||||| |||||||||||||||||||| |||||||||| | ||||| || |||
Sbjct 49 TCGTCTTCGTCTTCGATTCTCCTGATTCATGTCGTTTAAATTTTT-GACGATC-TCAGAA 106
Query 128 TCCCATTTTCCTTCGGGAATCTGACATTTTTTCTCGGGAAAtttttttATCCAAATCGGA 187
|||||||||||||||||||||||||| ||||||| | |||||||||| |
Sbjct 107 TCCCATTTTCCTTCGGGAATCTGACA--TTTTCTC--G---------TATCCAAATC-G- 151
Query 188 GTAAAGTATCGAATCTAGAGAATCCGCTATGGATGAGACCTATTTTGATCTATTGAATTT 247
| || | || | |||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 152 G---AG-A-CG----T-GAGAAT-CGCTATGGATGAGACGTATTTTGATCTATTGAATTT 200
Query 248 CTTTAAGAATCCCTCTTTTACAGAGACATTTGTCGACATCTTACTATGCGCAGTTCCGAT 307
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 201 CTTGAAGAATCCCTCTTTTACAGAGACATTTGTCGACATCTTACTATGTGCAGTTCCGAT 260
Query 308 TTGGCTCGCCGTTATGATCGGGTTATTAATCGGATGGTCTTGGCGTCCAAGATGGACCGG 367
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 261 TTGGCTCGCCGTCATGATCGGGTTATTAATCGGATGGTCTTGGCGTCCAAGATGGACCGG 320
Query 368 TTTGATCTATTTAGGGTTTCGTTCTAAGCTTCGGTTTTTATGGACCGCACCGCCTGGGTT 427
||||||||||||||||||||| ||||||||||||||| ||||||| ||||| ||||| ||
Sbjct 321 TTTGATCTATTTAGGGTTTCGGTCTAAGCTTCGGTTTCTATGGACTGCACCTCCTGGATT 380
Query 428 TGGTGCTCGTCGGCTTTGGCTTGCTTTCACCGCTCTCTCTGCTTTCTCCGTTTGCCGAAC 487
|||||||||| ||||||||||||||||||||||||| ||||||||||||||||| || ||
Sbjct 381 TGGTGCTCGTAGGCTTTGGCTTGCTTTCACCGCTCTTTCTGCTTTCTCCGTTTGTCGCAC 440
Query 488 CATCTGGTCAAGGAATGACACCAGAGCTAATAAATCGGCGACCGGTTCAGCTTCGTCGCA 547
|||||||||||||||||| || ||||||||||||||| |||||||||||| | |
Sbjct 441 CATCTGGTCAAGGAATGATACAAGAGCTAATAAATCGTCGACCGGTTCAG---C-T---- 492
Query 548 GACGCCTGTTGAGGATAATGATGAATCAGGATTGGCCTCAAGAGGTAGCGATAACGGGAC 607
||||| || || | ||||||||||||||| | ||||||||||||||||||| ||
Sbjct 493 ----CCTGTGGAAGAGAGTGATGAATCAGGATTAGTCTCAAGAGGTAGCGATAACATGAG 548
Query 608 GGTGACAGAGGATATTGTGACAGAGAATGATTTAGAGCATCTGCTTCAGCTGCTTGAAGT 667
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 549 GGTGACAGAGGATATTGTGACAGAGAATGATTTAGAGCATCTGCTTCAATTGCTTGAAGT 608
Query 668 TGGAAATGCAGCTTTGGAATGGCAATCTATGATGGATAAGACTACTCCAAATATGAGCTA 727
||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 609 TGGGAATGCAGCTATGGAATGGCAATCTATGATGGATAAGACTACTCCAAACATGAGCTA 668
Query 728 CCAGGCTTGGCGTCATGAGCCTGAGACAGGTCCTGTTATTTATCGCAGCCGGACTGTGTT 787
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 669 CCAGGCTTGGCGTCATGAGCCTGAGACAGGTCCTGTTATTTATCGCAGTCGAACTGTGTT 728
Query 788 TGAGGATGCAACTCCAGATATTGTTAGGGATTTCTTCTGGGATGATGAGTTTCGACCTAA 847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 729 TGAGGATGCAACTCCAGATATTGTTAGGGATTTCTTCTGGGATGATGAGTTTCGACCTAA 788
Query 848 ATGGGATTTCATGCTTGCCAACTTCAAAACGTTGGAGGAGGACACTCAGACAGGAACAAT 907
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 789 ATGGGATTTTATGCTTGCCAACTTCAAAACTTTGGAGGAGGACACTCAGACAGGAACGAT 848
Query 908 GATTGTTCAGTGGAGAAAAAAGTTTCCTTTTTTCTGTAGTGACCGAGAGTATATCATTGG 967
||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||
Sbjct 849 GATTGTTCAGTGGAGAAAAAAGTTTCCATTTTTCTGCAGCGACCGAGAGTATATCATTGG 908
Query 968 CCGGAGAATATGGGAGTCTGGGAAGAAGTATTATTGTGTCACAAAGGGAGTTCCTTATCC 1027
||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct 909 CCGGAGAATATGGGAGTCTGGAAAGAAGTATTACTGTGTGACAAAGGGAGTTCCTTATCC 968
Query 1028 AGCTCTACCAAAGCGTGATAAGCCAAGGCGTGTTGAGCTTTATTTCTCAAGTTGGGTTAT 1087
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 969 AGCTCTACCAAAGCGTGATAAGCCGAGGCGTGTTGAGCTTTATTTCTCAAGTTGGGTTAT 1028
Query 1088 CAGAGCGGTTGAATCCCGAAAAGGAGATGGACAGCAAACGGCTTGTGAAGTTTCCCTT-G 1146
|||||| ||||||||||||||||||||||| | | ||| ||||||||||| | |||| |
Sbjct 1029 CAGAGCAGTTGAATCCCGAAAAGGAGATGG--A-CTAACAGCTTGTGAAGTAT-CCTTAG 1084
Query 1147 TCCACTACGAAGACATGGGCATCCCAAAAGACGTAGCAAAGTTAGGTGTCCGTCATGGCA 1206
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1085 TCCACTACGAAGACATGGGAATCCCAAAAGATGTAGCAAAGTTAGGTGTCCGTCATGGCA 1144
Query 1207 TGTGGGGAGCTGTCAAGAAGCTAAACTCTGGTTTACGAGCGTACCAATCCGCCAGAAAAT 1266
||||||||||||| |||||||||||||| ||||||||||| |||||||| ||||||||||
Sbjct 1145 TGTGGGGAGCTGTAAAGAAGCTAAACTCCGGTTTACGAGCATACCAATCTGCCAGAAAAT 1204
Query 1267 CAGACTCATCTCTATCTCGGATCGCCCAAATGGCAAGAATCACTACAAAACTGAACATGG 1326
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1205 CAGACTCATCTCTATCCCGGATCGCCCAAATGGCAAGAATCACTACAAAACTGAACATGG 1264
Query 1327 ATTCTGCAGAATCATCTTCAAGAGATGAAGACAGAAGCAGAGCAATGGAATATGC--G-A 1383
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
Sbjct 1265 ATTCTGCAGAATCATCTTCAAGAGATGAAGACAGAAGCAGAGCAATGGACTATGCAAGGA 1324
Query 1384 GACAACGGGACCATTTGAGAATGGACTGGAAATGGGTTGTTGTAGGAGGTGTCGCATTGG 1443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1325 GACAACGGGACCATTTGAGAATGGACTGGAAATGGGTTGTTGTAGGAGGTGTCGCATTGG 1384
Query 1444 CTTGTGGCCTTCACTCTGGGATCATTGGCAAGGCTTTACTGGCTGGAGCTGGCCAGAGAC 1503
||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1385 CTTGTGGTCTTCACACTGGGATCATTGGTAAGGCTTTACTGGCTGGAGCTGGCCAGAGAC 1444
Query 1504 TGGCTCGTAGGTGAGAAACCTTGTCGTATTCTTATTATATCTTCCCTTGACAGAAAAGA- 1562
|||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1445 TGGCGCGTAGGTGAAAAACCTTGTCATATTCTTATTATATCTTCCCTTGACAGAAAAGAA 1504
Query 1563 GAAACATATGCATATAATTAAGGGAAATGTATTATTTTTGCAACTCCTCTGAGAAGGGCA 1622
||| ||||| ||||||| |||||||||||||| || ||||||||||| |||||| ||||
Sbjct 1505 GAA-CATATACATATAACAAAGGGAAATGTATTCTTCTTGCAACTCCTATGAGAAAGGCA 1563
Query 1623 TGTGGTTTTGGTGGTGAACCATGTAGAGTAGTAGCTTTAAACTATGGAGTCAT--AAGTT 1680
|||||||||| |||||||||||||||||||||| |||||||||||||||| | |||||
Sbjct 1564 TGTGGTTTTGACGGTGAACCATGTAGAGTAGTAGTTTTAAACTATGGAGTCTTTTAAGTT 1623
Query 1681 ATTTGAGTTCTATCTTGT-ACCACAGGATAGTGAGATATGTATTTTATAAACTATATGAA 1739
|||||||||||||| || || ||||||||||||||||||||||||||||||||||||||
Sbjct 1624 CTTTGAGTTCTATCTCGTTAC-ACAGGATAGTGAGATATGTATTTTATAAACTATATGAA 1682
Query 1740 TCTACATAGCTTCTAAAAGCTTAAATTCT 1768
||||||||||||||||||||||||| |||
Sbjct 1683 TCTACATAGCTTCTAAAAGCTTAAAATCT 1711
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66353206790
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5