BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14510.1
Length=2940
Score E
Sequences producing significant alignments: (Bits) Value
Ahg330061 jgi|Araly1|330061|fgenesh1_pm.C_scaffold_7002288 2026 0.0
> Ahg330061 jgi|Araly1|330061|fgenesh1_pm.C_scaffold_7002288
Length=2760
Score = 2026 bits (1097), Expect = 0.0
Identities = 1326/1432 (93%), Gaps = 34/1432 (2%)
Strand=Plus/Plus
Query 146 CGACGACTACTTCGGCGAAGTTTGT-CGATTC-TCTGGGAAGTTCTTTCTGCAAGTTCCA 203
||||||||||||||||||||||| | |||||| | ||||||| |||||||||||||||||
Sbjct 32 CGACGACTACTTCGGCGAAGTTT-TCCGATTCGT-TGGGAAGCTCTTTCTGCAAGTTCCA 89
Query 204 TGGTACAAGTTCATCAATTTCACTCAGGTCCTATAGATTCGGTTTCTCTTTTATGAAAAA 263
||| | |||||| |||||||||||||||||||||| ||||||||| |||||||| |||||
Sbjct 90 TGGAAAAAGTTCGTCAATTTCACTCAGGTCCTATATATTCGGTTTTTCTTTTATAAAAAA 149
Query 264 TGTTAAACGATTATCGTGTGAAGGTAGTAGCAGTAGTAGTAGCAGTAGGAATGAGAATTG 323
| ||| || |||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 150 GGCTAAGCGGTTATCGTGTGAAGGTAGT----G--GTAGTAGCAGTAGGAATGAGAATTG 203
Query 324 GAATAG-AACACAGAAGCAGAATCAGTTTAGACCTTCAAAGGTAGTGTTGAATCGTCGAA 382
|||||| ||| |||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 204 GAATAGAAAC-CAGAGGCAGAATCAATTTAGACCTTCAAAGGTAGTGTTGAATCGTCGAA 262
Query 383 AAGACGAGAGATTTTCGGATTTAGGGGTTATAAGTGGTGAGAACAGTAGTCGAAGTGGTG 442
|||| ||||| |||||||||||||| ||||| |||||||||||||||||||||||| |||
Sbjct 263 AAGAAGAGAGGTTTTCGGATTTAGGAGTTATGAGTGGTGAGAACAGTAGTCGAAGTAGTG 322
Query 443 ATGTTGGTGGTGGTAGTGGGAGTAGTAGTACAATGGAGAAGATTGTAGAGAAGTTAAAAA 502
||||||||||| | || | | | |||||||||||||||||||| |||||||| ||||
Sbjct 323 ATGTTGGTGGT-G--GT--G-G--G-AGTACAATGGAGAAGATTGTTGAGAAGTTGAAAA 373
Query 503 AGTATGGATTTGTGGATGAAGATCAGTTTCAGGATAAGGAAGTTGAACAAGAGAGAAGAA 562
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 374 AGTATGGATTTGTGGATGATGATCAGTTTCAAGATAAGGAAGTTGAACAAGAGAGAAGAA 433
Query 563 TTGA-GAAGAGTTCGGTGGAGGAAAGGTTCTATGTGGAAGAAAGAAGAGGTGGATTCTCG 621
|||| ||| || ||||||||||| || |||||||| ||||||||||||||||||| ||||
Sbjct 434 TTGAGGAA-AGGTCGGTGGAGGATAGATTCTATGTCGAAGAAAGAAGAGGTGGATCCTCG 492
Query 622 GAGGAATCACCATTTGGTGTATATGGAGGGAATGATGAAGTTAAGTTTCCTTGGGAAAAG 681
|||||||||||||||||||| | ||||||| | |||||||||||||||||||||| |||
Sbjct 493 GAGGAATCACCATTTGGTGTGTTTGGAGGG-A--ATGAAGTTAAGTTTCCTTGGGAGAAG 549
Query 682 GTGAGTTCTATGGAGAAGAAGGAGTTGGTAAATGGAGAGTGGACAGCTAAGAAGGAGAGT 741
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 550 GTGAGTTCTATGGAGAAGAAGGAGTTGGTAAATGGAGAGTGGACAGCGAAGAAGGAGAGT 609
Query 742 AGATACTCGCTGGCGGAGATGACTCTTTCGGAATTTGAATTGAATCGGTTGAGGAATGTG 801
||||||| | ||||||||| |||||||||||||| ||| ||||||||||||||||||||
Sbjct 610 AGATACTTGTTGGCGGAGAGGACTCTTTCGGAATCTGAGCTGAATCGGTTGAGGAATGTG 669
Query 802 ATGTTTCGAACAAAGAGTAAGATGAGAGTTACGGGTGCAGGTGTTACTCAGGCTGTGGTT 861
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 670 ATGTTTCGAGCGAAGAGTAAGATGAGAGTTACGGGTGCAGGTGTTACTCAGGCTGTGGTA 729
Query 862 GATGCAATCCAGGAGAAGTGGAAGGGGTCAGAGATTGTGAGACTTAAGATTGAAGGATCA 921
|||||||| ||||||||||||||| | |||||||||||||||||||||||||||||| ||
Sbjct 730 GATGCAATTCAGGAGAAGTGGAAGAGCTCAGAGATTGTGAGACTTAAGATTGAAGGAGCA 789
Query 922 AGTGCACTCAACATGAGAAGGATGCATGAGATATTAGAGAGAAAAACTGGTGGTTTGGTG 981
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 790 AGTGCCCTAAACATGAGAAGGATGCATGAGATATTAGAGAGAAAAACTGGTGGTTTGGTG 849
Query 982 ATTTGGAGGTCAGGGACTTCCATCGCCTTGTACAATTACAAAGGTGGCAGCAACAGGGAT 1041
|||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 850 ATTTGGAGGTCAGGAACTTCCATCGCATTGTACAATTACAAAGGTGGCAGTAACAGGGAT 909
Query 1042 GGATCAGGGAACATGAACAAGC-AAGTATACAGAAGAGCAGAGAGATTGCCATCTT-CTT 1099
||||||||||| |||| ||||| || |||||||||||||||||| |||||| |||| |||
Sbjct 910 GGATCAGGGAATATGATCAAGCGAA-TATACAGAAGAGCAGAGACATTGCCGTCTTCCTT 968
Query 1100 ---TAC--CTACAAGTACAGTGGATCAAAGTGTTCAACTAGTGAATCTTCCTCAGCTAGA 1154
||| |||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 969 ACCTACGAATACAAGTACAGTGGATCAAAGTGTTCAACTAGTGCATTTTCCTCAGCTAGA 1028
Query 1155 GAAGGAGCCAACTGTTGTGGGAAATAAAGACAGGACATCTCCACAAGAAGTAGAATATGA 1214
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1029 GAAGGAGCCAACCGTTGTGGGAAATAAAGACACGACATCTCCACAAGAAGTAGAATATGA 1088
Query 1215 AGATGAAATAAATGAACTGTTAGAGGGTCTTGGTCCTCGGTACACGGACTGGCAGGGAGG 1274
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1089 AGATGAAATAAATGAACTGTTAGAGGGCCTTGGTCCTCGGTACACAGACTGGCAGGGAGG 1148
Query 1275 TTATCCGTTACCTGTTGATGCTGATTTGCTTCCAGGGATTGTTCCTGGTTACGAACCTCC 1334
||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| ||
Sbjct 1149 TTATCCGTTACCTGTTGATGCTGATTTGCTTCCTGGGATCGTTCCTGGTTATGAACCCCC 1208
Query 1335 TTTTAGGGCACTTCCTTATGGAGTGAGATCAACTCTGGGAACAAAGGAGGCAACCTCTTT 1394
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1209 TTTTAGGGTACTTCCTTATGGAGTGAGATCAACTCTGGGAACAAAGGAGGCTACCTCTTT 1268
Query 1395 AAGAAGAATTGCTACAGTTCTTCCTCCCCACTTTGCTTTAGGTCGAAGTAGACAGCTGCA 1454
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1269 AAGAAGAATTGCCACAGTTCTTCCTCCACACTTTGCTTTAGGTCGAAGTAGACAGCTGCA 1328
Query 1455 AGGGTTGGCAACAGCCATGGTTAAGTTATGGCAAAAGAGTTTGATTGCCAAGGTTGCCCT 1514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1329 AGGGTTGGCAACAGCCATGGTTAAGTTATGGCAAAAGAGTTTGATTGCCAAGGTTGCCCT 1388
Query 1515 TAAACGTGGTGTACAACTGACGACCAGTGAGAGAATGGCTGAAGACATCAAG 1566
|||||| |||||||||||||| ||||| |||||||||||||| |||||||||
Sbjct 1389 TAAACGGGGTGTACAACTGACTACCAGCGAGAGAATGGCTGAGGACATCAAG 1440
Score = 1893 bits (1025), Expect = 0.0
Identities = 1201/1282 (94%), Gaps = 27/1282 (2%)
Strand=Plus/Plus
Query 1569 ATTGACGGGAGGTATGCTGCTTTCGAGGAACAAAGATTTTTTGGTTTTCTACAGAGGAAA 1628
|||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1482 ATTGACTGGAGGTATGCTGCTCTCGAGGAACAAAGATTTCTTGGTTTTCTACAGAGGAAA 1541
Query 1629 GAGTTTTTTGTCACTAGAAGTAGGTGAAGCATTGATGGAGAAGGAGATGCTTGTAAGGAC 1688
|| |||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||
Sbjct 1542 GAATTTTTTGTCACTAGAAGTAGCTGAAGCATTAATGGAGAAGGAGAGGCTTGTAAGGAC 1601
Query 1689 TTTGCAAGACGAAGAGGAACAAGCACGTCTAAGAGCATCATCGGCTCTGGTTGTCCCAAG 1748
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1602 TTTGCAAGACGAAGAGGAACAAGCACGTCTAAGGGCATCATCGGCTCTGGTTGTCCCAAG 1661
Query 1749 TATAAAGGCTAATCAACAA-CTTGCAAGGACTTTGCAAGACAAAGAGGAACAGGCACGTC 1807
|||||| ||||||||| || ||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1662 TATAAAAGCTAATCAA-AACCTTGCAAGGACTTTGCAAGACGAAGAGGAACAGTCACGTC 1720
Query 1808 CATCAGCTCTGGTTTTACCAAGTACTAAAGCTAATCAAAACCTTGTTTCTGCCGGTACTC 1867
|||| ||||||||| | |||||||||||||||||||||| |||||||||||| |||| ||
Sbjct 1721 CATCGGCTCTGGTTGTCCCAAGTACTAAAGCTAATCAAACCCTTGTTTCTGCTGGTAGTC 1780
Query 1868 TTGGAGAAACTCTTGATGCAACTGGTAAATGGGGAAAAAATCTGGATAACGATGATCATG 1927
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1781 TTGGAGAAACTCTTGATGCAACTGGTAAGTGGGGGAAAAATCTGGATAACGATGATCATG 1840
Query 1928 TGGAGGAAATGAAACAAGAGGTTGAGA-AAGTGAGATCTGCAAAACTTGTCAGGAAGTTG 1986
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1841 TGGAGGAAATGAAACAAGAGGTTGAGAGAA-TGAGATCTGCAAAACTTGTCAGGAAGTTG 1899
Query 1987 GAAAGGAAACTTGCTTTCGCTGAGAAAAAGCTGCTGAAAGCTGAACGGGCTTTAGCTAAG 2046
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1900 GAAAGGAAACTTGCTTTTGCTGAGAAAAAGCTGCTGAAAGCTGAACGGGCTTTAGCTAAG 1959
Query 2047 GTGGAGGAATCTCTGAAGCCAGCAGAGCAGAGAACAGACCTTGAGGGCATAACAGAAGAA 2106
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1960 GTGGAGGAATCTCTGAAGCCAGCAGAGCAGAGAACAGACCTTGAGGGCATAACTGAGGAA 2019
Query 2107 GAGAGATTTATGTTCCAAAAGCTCGGATTGAAGATGAAAGCTTTCTTACTTCTTGGTCGA 2166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2020 GAGAGATTTATGTTCCAAAAGCTCGGATTGAAGATGAAAGCTTTCTTACTTCTTGGTCGA 2079
Query 2167 AGAGGGGTGTTTGATGGGACTGTAGAGAACATGCACTTGCACTGGAAATATCGGGAGCTG 2226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2080 AGAGGGGTGTTTGATGGGACTGTAGAGAACATGCACTTGCACTGGAAATATCGGGAGCTG 2139
Query 2227 ATCAAGATTCTTGTAAAGGCTAAAACTTTAGAGGGTGC-ACAGAAAGTGGCAATGGCCCT 2285
||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||
Sbjct 2140 ATCAAGATTCTTGTAAAGGCTAAAAGTTTAGAGGGTGCGA-AGAAAGTGGCAATGGCCCT 2198
Query 2286 TGAAGCCGAGAGTGGAGGTATCCTGGTTTCTGTTGACAAAATTTCCAAAGGCTATGCCGT 2345
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2199 TGAAGCCGAGAGTGGAGGTATCCTGGTTTCTGTTGACAAAATTTCCAAAGGGTATGCCGT 2258
Query 2346 AATCGTGTATAGAGGAAAAGATTATAAACGTCCTACCACACTGAGGCCTAAAAACCTCTT 2405
||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||
Sbjct 2259 AATCGTGTATAGAGGAAAAGACTATAAGCGTCCTACCACGTTGAGGCCTAAAAACCTCTT 2318
Query 2406 GACAAAGAGGAAAGCTTTGGCTCGTTCTCTTGAGCTTCAAAAACGCGAGGCTCTTATTAA 2465
||||||||||||||||||||| |||||||||||||| || ||||| ||||||||||||||
Sbjct 2319 GACAAAGAGGAAAGCTTTGGCACGTTCTCTTGAGCTCCAGAAACGTGAGGCTCTTATTAA 2378
Query 2466 ACACATTGAGGCGATACAGACGAGATCAGAGCAGCTGAGAGCTGAAATTGAACAAGTGGA 2525
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2379 ACACATTGAGGCGGTACAGACGAGATCAGAGCAGCTGAGAGCTGAAATTGAACAAGTGGA 2438
Query 2526 ACTTGTAAAAGACAAGGGAGATGAAACATTATACGACAAGCTTGACATGGCTTATTCTTC 2585
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 2439 ACTTGTAAAAGACAAGGGAGATGAAGCGTTATACGACAAGCTTGACATGGCTTATTCTTC 2498
Query 2586 TGACGAGGAAACAGAAGAAACAGATGGAGAGGAAGATGACGTGTATTTAGATACATACGA 2645
||| ||||| || ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2499 TGATGAGGAGACCGAAGAAACAGATGGAGAGGAAGATGACATGTATTTAGATACATACGA 2558
Query 2646 AGACGAGGGAGAAGATGATGAAGAAGGTGGGATTCAGGCCAACGGTTCACTATCTGAAAC 2705
||||||||||||||||| ||||||||||| |||||||||||| |||||| ||||||||||
Sbjct 2559 AGACGAGGGAGAAGATGGTGAAGAAGGTGAGATTCAGGCCAAGGGTTCATTATCTGAAAC 2618
Query 2706 AGATGTTGAATTTGGTTCAGATGA--A--TC----A----GAC-A--CAGAT------TT 2744
|||||||| ||||||||||||||| | || | ||| | |||| ||
Sbjct 2619 AGATGTTGGATTTGGTTCAGATGATGAACTCTGGGATTCAGACGAATCAGACAGAGAGTT 2678
Query 2745 TGGCGATAATTCTGCATCCTCTACAACACCAGAAACAACCTTTGTAGAACTGCAGAATGA 2804
|||| || ||||||||||||| |||||||||||||||||||||||||| | ||||| ||
Sbjct 2679 TGGCAATGATTCTGCATCCTCCACAACACCAGAAACAACCTTTGTAGATGTACAGAACGA 2738
Query 2805 GGAACTTGATGTACAACCATAA 2826
||||||| |||| |||||||||
Sbjct 2739 GGAACTTCATGTGCAACCATAA 2760
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110994973930
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5