BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G14520.1 Length=883 Score E Sequences producing significant alignments: (Bits) Value Ahg493454 jgi|Araly1|493454|fgenesh2_kg.7__2887__AT4G14520.2 881 0.0 > Ahg493454 jgi|Araly1|493454|fgenesh2_kg.7__2887__AT4G14520.2 Length=725 Score = 881 bits (477), Expect = 0.0 Identities = 577/625 (92%), Gaps = 7/625 (1%) Strand=Plus/Plus Query 101 AGGTAACAGATAAA-CACGAATGTTTTCAGAAGTAGAAATGGCTCGAGACGTGGCTATAT 159 |||| ||||||||| || | |||||||||||||||||||||||||| || |||||||||| Sbjct 105 AGGTGACAGATAAACCA-G-ATGTTTTCAGAAGTAGAAATGGCTCGGGATGTGGCTATAT 162 Query 160 GTGCCAAACACTTGAATGGCCAATCGCCGCACCAACCGATTCTATGCAGACTACTCCAAG 219 ||||||| ||||||||||||||| |||||||||| | ||||||| ||||||||||| ||| Sbjct 163 GTGCCAATCACTTGAATGGCCAAGCGCCGCACCATCAGATTCTAGGCAGACTACTCAAAG 222 Query 220 ATCTAATACACGAGAAAGCGTGCAGGGAACACGGATTCTATCTCGGCATCACCGCTCTAA 279 ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| | Sbjct 223 ATCTAATACACGAGAAAGCATGCAGGGAACACGGATTCTATCTCGGTATCACCGCTCTGA 282 Query 280 AAAGCATCGGTAACAACAAGAACAACAA-CATCGACAACGAAAACAATCATCAAGCAAAA 338 |||||||||||||||||||||||||||| | ||| |||||| ||||||| |||||| | Sbjct 283 AAAGCATCGGTAACAACAAGAACAACAATGA-CGAGAACGAAGACAATCACCAAGCACAT 341 Query 339 ATCCTCACATTCCCGGTGTCCTTCACATGCCGCACATTCTTGCCTGCAAGAGGAGATATC 398 |||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 342 ATCCTCACATTCCCAGTGTCCTTCACATGCCGCACTTTCTTGCCTGCTAGAGGAGATATC 401 Query 399 TTGCAAGGGACTGTaaaaaaaGTGTTGTGGAACGGAGCTTTTATCAGGTCAGGACCACTC 458 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 402 TTGCAAGGGACTGTTAAAAAAGTGTTGTGGAACGGAGCTTTTATCAGGTCAGGACCACTC 461 Query 459 AGATACGCATACCTCTCACTCTTGAAAATGCCACATTATCATTATGTCCACTCACCATTG 518 |||||||||||||| || ||||||||||||| |||| ||||||||||||||||||||| Sbjct 462 AGATACGCATACCTTTCGTTCTTGAAAATGCCGGATTACCATTATGTCCACTCACCATTG 521 Query 519 TCGGAGGACGAGAAACCGCATTTTCAGAAAGACGACCTCTCAAAGATTGCTGTTGGAGTT 578 | |||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||| Sbjct 522 TTGGAGGACGAGAAGCCGTATTTTCAGAAAGACGATCTCTCAAAGATTGCTGTTGGAGTT 581 Query 579 GTTGTGCGGTTTCAGGTGTTGGCTGTGCGGTTTAAAGAGA-GACCACACAAGAGAAGAAA 637 |||||||||||| ||||||||||||||||||||| |||| | ||||||||||||||||| Sbjct 582 GTTGTGCGGTTTGGGGTGTTGGCTGTGCGGTTTAAGGAGAAG-CCACACAAGAGAAGAAA 640 Query 638 CGACTATTATGTTCTTGCAACTTTGGAAGGCAATGGTTCATTTGGTCCCATCTCTCTTAC 697 ||||||||||||||||| ||||||||| |||| | |||||||||||||||||||||||| Sbjct 641 TGACTATTATGTTCTTGCGACTTTGGAACGCAACGATTCATTTGGTCCCATCTCTCTTAC 700 Query 698 AGGGTCAGATGAGCCATACATGTAA 722 |||||| |||||||||||||||||| Sbjct 701 AGGGTCGGATGAGCCATACATGTAA 725 Score = 93.5 bits (50), Expect = 2e-18 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 3 GCCTCTCTTTGCCCGTACGATTCTTCGGGCTCTATGAGATATCGAATTTTCTTCTCAAG 61 |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 48 GCCTCTCTTTTACCGTACGATTCTTCGGGCTCTATGAGATTTCGAATTTTCTTCTCAAG 106 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32709462786 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5