BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14520.1
Length=883
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493454 jgi|Araly1|493454|fgenesh2_kg.7__2887__AT4G14520.2 881 0.0
> Ahg493454 jgi|Araly1|493454|fgenesh2_kg.7__2887__AT4G14520.2
Length=725
Score = 881 bits (477), Expect = 0.0
Identities = 577/625 (92%), Gaps = 7/625 (1%)
Strand=Plus/Plus
Query 101 AGGTAACAGATAAA-CACGAATGTTTTCAGAAGTAGAAATGGCTCGAGACGTGGCTATAT 159
|||| ||||||||| || | |||||||||||||||||||||||||| || ||||||||||
Sbjct 105 AGGTGACAGATAAACCA-G-ATGTTTTCAGAAGTAGAAATGGCTCGGGATGTGGCTATAT 162
Query 160 GTGCCAAACACTTGAATGGCCAATCGCCGCACCAACCGATTCTATGCAGACTACTCCAAG 219
||||||| ||||||||||||||| |||||||||| | ||||||| ||||||||||| |||
Sbjct 163 GTGCCAATCACTTGAATGGCCAAGCGCCGCACCATCAGATTCTAGGCAGACTACTCAAAG 222
Query 220 ATCTAATACACGAGAAAGCGTGCAGGGAACACGGATTCTATCTCGGCATCACCGCTCTAA 279
||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
Sbjct 223 ATCTAATACACGAGAAAGCATGCAGGGAACACGGATTCTATCTCGGTATCACCGCTCTGA 282
Query 280 AAAGCATCGGTAACAACAAGAACAACAA-CATCGACAACGAAAACAATCATCAAGCAAAA 338
|||||||||||||||||||||||||||| | ||| |||||| ||||||| |||||| |
Sbjct 283 AAAGCATCGGTAACAACAAGAACAACAATGA-CGAGAACGAAGACAATCACCAAGCACAT 341
Query 339 ATCCTCACATTCCCGGTGTCCTTCACATGCCGCACATTCTTGCCTGCAAGAGGAGATATC 398
|||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 342 ATCCTCACATTCCCAGTGTCCTTCACATGCCGCACTTTCTTGCCTGCTAGAGGAGATATC 401
Query 399 TTGCAAGGGACTGTaaaaaaaGTGTTGTGGAACGGAGCTTTTATCAGGTCAGGACCACTC 458
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 402 TTGCAAGGGACTGTTAAAAAAGTGTTGTGGAACGGAGCTTTTATCAGGTCAGGACCACTC 461
Query 459 AGATACGCATACCTCTCACTCTTGAAAATGCCACATTATCATTATGTCCACTCACCATTG 518
|||||||||||||| || ||||||||||||| |||| |||||||||||||||||||||
Sbjct 462 AGATACGCATACCTTTCGTTCTTGAAAATGCCGGATTACCATTATGTCCACTCACCATTG 521
Query 519 TCGGAGGACGAGAAACCGCATTTTCAGAAAGACGACCTCTCAAAGATTGCTGTTGGAGTT 578
| |||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 522 TTGGAGGACGAGAAGCCGTATTTTCAGAAAGACGATCTCTCAAAGATTGCTGTTGGAGTT 581
Query 579 GTTGTGCGGTTTCAGGTGTTGGCTGTGCGGTTTAAAGAGA-GACCACACAAGAGAAGAAA 637
|||||||||||| ||||||||||||||||||||| |||| | |||||||||||||||||
Sbjct 582 GTTGTGCGGTTTGGGGTGTTGGCTGTGCGGTTTAAGGAGAAG-CCACACAAGAGAAGAAA 640
Query 638 CGACTATTATGTTCTTGCAACTTTGGAAGGCAATGGTTCATTTGGTCCCATCTCTCTTAC 697
||||||||||||||||| ||||||||| |||| | ||||||||||||||||||||||||
Sbjct 641 TGACTATTATGTTCTTGCGACTTTGGAACGCAACGATTCATTTGGTCCCATCTCTCTTAC 700
Query 698 AGGGTCAGATGAGCCATACATGTAA 722
|||||| ||||||||||||||||||
Sbjct 701 AGGGTCGGATGAGCCATACATGTAA 725
Score = 93.5 bits (50), Expect = 2e-18
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 3 GCCTCTCTTTGCCCGTACGATTCTTCGGGCTCTATGAGATATCGAATTTTCTTCTCAAG 61
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 48 GCCTCTCTTTTACCGTACGATTCTTCGGGCTCTATGAGATTTCGAATTTTCTTCTCAAG 106
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32709462786
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5