BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14540.1
Length=603
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493452 jgi|Araly1|493452|fgenesh2_kg.7__2885__AT4G14540.1 941 0.0
> Ahg493452 jgi|Araly1|493452|fgenesh2_kg.7__2885__AT4G14540.1
Length=591
Score = 941 bits (509), Expect = 0.0
Identities = 566/592 (96%), Gaps = 9/592 (2%)
Strand=Plus/Plus
Query 1 AAAACATCTATCTCTCTTTCTCGACCTTTTGTCTCCTCGATCTAAAGATGGCGGATTCGG 60
||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1 AAAACATCTCTCTCTCTTTCTCCACCTTTTGTCTCCTCGATCTAAA-ATGGCGGATTCGG 59
Query 61 ACAACGATTCAGGAGGACACAAAGACGGTGGAAATGCTTCGACACGTGAGCAAGATAGGT 120
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 60 ACAACGATTCAGGAGGACACAAAGACGGTGGAAATGCTTCAACACGTGAGCAAGATAGGT 119
Query 121 TTCTACCGATCGCTAACGTTAGCAGGATCATGAAGAAAGCACTTCCTGCGAACGCAAAAA 180
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 120 TTCTACCGATCGCTAACGTTAGCAGGATCATGAAGAAAGCACTTCCGGCGAACGCAAAAA 179
Query 181 TCTCTAAGGATGCTAAAGAAACGGTTCAAGAGTGTGTATCGGAATTCATAAGTTTCATCA 240
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TCTCCAAGGACGCTAAAGAAACGGTTCAAGAGTGTGTATCGGAATTCATAAGTTTCATCA 239
Query 241 CCGGTGAGGCTTCTGACAAGTGTCAGAGAGAGAAGAGGAAGACAATCAACGGTGACGATC 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CCGGTGAAGCTTCTGACAAGTGTCAGAGAGAGAAGAGGAAGACAATCAACGGTGACGATC 299
Query 301 TTCTTTGGGCGATGACTACGCTAGGGTTTGAGGACTACGTGGAGCCTCTCAAGGTTTATC 360
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 300 TTCTTTGGGCGATGACTACGCTAGGGTTTGAGGATTACGTGGAGCCTCTAAAGGTTTATC 359
Query 361 TGCAAAAGTATAGGGAGGTGGAAGGAGAGAAGACTACTACGGCAGGGAGACAAGGCGATa 420
||||||| ||||||||||||||||| ||||||||||||||||| ||||||| ||||||||
Sbjct 360 TGCAAAAATATAGGGAGGTGGAAGGTGAGAAGACTACTACGGCCGGGAGACTAGGCGATA 419
Query 421 aggaaggtggaggaggaggcggtggagctggaagtggaagtggaggagCTCCGATGTACG 480
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AGGAAGGTGGAGGAGGCGGCGGTGGAGCTGGAAGTGGAAGTGGAGGAGCTCCGATGTACG 479
Query 481 GTGGTGGCATGGTGACTACGATGGGACATCAATTTTCCCATCATTTTTCTTAATT-GT-A 538
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| || |
Sbjct 480 GTGGTGGCATGGTGACTACGATGGGGCATCAATTTTCTCATCATTTTTCTTAATTTGTTA 539
Query 539 A----AA--TGATAAAAGCAAATTTTCATTTTTATTAATTAATGatatatat 584
| || ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 540 ATTGTAAAATGATATAAGCAAATTTTCATTTTTATTAATTAATGATATATAT 591
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22092086031
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5