BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14550.1
Length=1482
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493451 jgi|Araly1|493451|fgenesh2_kg.7__2884__AT4G14550.1 1906 0.0
Ahg319024 jgi|Araly1|319024|fgenesh1_pm.C_scaffold_3002040 641 0.0
> Ahg493451 jgi|Araly1|493451|fgenesh2_kg.7__2884__AT4G14550.1
Length=1458
Score = 1906 bits (1032), Expect = 0.0
Identities = 1347/1488 (91%), Gaps = 66/1488 (4%)
Strand=Plus/Plus
Query 30 CAAGAGTTATCgagagagagagaAAACATATTCTGATTTAAGACATATATAGAC--AGCA 87
|||||||||||||||||||||||||||||||| |||||||| | | |||||||| ||||
Sbjct 2 CAAGAGTTATCGAGAGAGAGAGAAAACATATTTTGATTTAACAAAAATATAGACAAAGCA 61
Query 88 AGAAGAGATATGAACCTTAAGGAGACGGAGCTTTGTCTTGGCCTCCCCGGAGGCACTGAA 147
||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 62 AGAAGAG--ATGAACCTTAAGGAGACGGAGCTTTGTCTTGGCCTCCCTGGAGGTGGTGAA 119
Query 148 ACCGTTGAAAGTCCGGCCAAGTCGGGTGTTGGGAACAAGAGAGGCTTCTCCGAGACCGTT 207
||||||||||||||| |||||||||| || || ||||||||||||||||| ||||| |||
Sbjct 120 ACCGTTGAAAGTCCGTCCAAGTCGGGCGTAGGTAACAAGAGAGGCTTCTCTGAGACTGTT 179
Query 208 GATCTCAAACTTAATCTTCAATCTAACAAACAAGGACATGTGGATCTCAACACTAATGGA 267
| ||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 180 GGTCTCAAACTCAATCTTCAATCTAACAAACAAGGACCTGTGGATCTCAACGTTAATGGA 239
Query 268 GCTCCCAAGGAGAAGACCTTCCTTAAAGACCCTTCTAAGCCTCCTGCTAAAGCACAAGTG 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GCTCCCAAGGAGAAGACCTTCCTTAAAGACCCTTCTAAGCCTCCTGCTAAAGCACAAGTG 299
Query 328 GTGGGTTGGCCACCGGTGAGGAACTACCGGAAAAATGTTATGGCTAATCAGAAGAGCGGC 387
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 300 GTGGGTTGGCCACCGGTGAGGAACTACCGAAAAAATGTTATGGCTAATCAGAAGAGCGGC 359
Query 388 GAAGCAGAGGAGGCAATGAGTAGTGGTGGAGGAACCGTCGCCTTTGTGAAGGTTTCCATG 447
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GAAGCGGAGGAGGCAATGAGTAGTGGTGGAGGAACCGTCGCCTTTGTGAAGGTTTCCATG 419
Query 448 GATGGAGCTCCTTATCTTCGGAAGGTTGACCTCAAGATGTACACCAGCTACAAGGATCTC 507
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 420 GATGGAGCTCCTTATCTTCGGAAGGTTGACCTCAAGATGTACAACAGCTACAAGAATCTC 479
Query 508 TCTGATGCCTTGGCCAAAATGTTCAGCTCCTTTACCATGGGGAGTTATGGAGCACAAGGG 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TCTGATGCCTTGGCCAAAATGTTCAGCTCCTTTACCATGGGGAGTTATGGAGCACAAGGG 539
Query 568 ATGATAGATTTCATGAACGAGAGTAAAGTGATGGATCTGTTGAACAGTTCTGAGTATGTT 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 ATGATAGATTTCATGAACGAGAGTAAAGTGATGGATCTGTTGAACAGTTCTGAGTATGTT 599
Query 628 CCAAGCTACGAGGACAAAGATGGTGACTGGATGCTCGTTGGTGATGTCCCCTGGCCGATG 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CCAAGCTACGAGGACAAAGATGGTGACTGGATGCTCGTTGGTGATGTCCCCTGGCCGATG 659
Query 688 TTTGTCGAGTCATGCAAACGTTTGCGCATAATGAAAGGATCCGAAGCAATTGGACTTGCT 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TTTGTCGAGTCATGCAAACGTTTGCGCATAATGAAAGGATCCGAAGCAATTGGACTTGCT 719
Query 748 CCAAGAGCAATGGAGAAGTTCAAGAACAGATCATGAACaaaaaaaaaaGAGGACAATATG 807
|||||||| |||||||||||||||||||||||||||||||| |||||||| | |
Sbjct 720 CCAAGAGCGATGGAGAAGTTCAAGAACAGATCATGAACAAACAAAAAAGA------T-T- 771
Query 808 CATTGAttttttttttttGGTATTGTTATGATCATGTGT-TTT-TAATTTAAAATATTGG 865
| | |||||||| ||||||||||||||||| ||| ||| |||||| ||||||||
Sbjct 772 --T-G-TTTTTTTT----GGTATTGTTATGATCATATGTGTTTGTAATTTTTAATATTGG 823
Query 866 AAGTATATAGGAAAATATAATTGTTTACGaaaa-aaaTAACTTTAAATATGTCttttttt 924
||||||||||||||||| |||||| |||||||| |||| |||| |||||||||| | |||
Sbjct 824 AAGTATATAGGAAAATAGAATTGTCTACGAAAACAAATCACTTGAAATATGTCTGTGTTT 883
Query 925 ttttttttGAAATTAGTCTGTGTTTTTGTTTTCATCTCTTAATTAGTAGAAATCATTTTT 984
|| || ||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 884 TTGTT---GAAATTAGTCTGTGTTTTTGTTTTCATCTCTTAATTAGTCGAAATCAATTTT 940
Query 985 TAATATGTAATTGTGATAGTAAATCTATAGAGTTCGTATTTTTGCTATTTAAAATT-TAA 1043
||||||||||| |||||||||| |||||||||||| | |||||||||||| |||| |||
Sbjct 941 TAATATGTAATAGTGATAGTAATTCTATAGAGTTCTT-TTTTTGCTATTTGAAATGCTAA 999
Query 1044 AATGCTAATACTATATATAATTTATGATAGGTAAATTTACGTTAAA-TAatttatctcca 1102
| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1000 A-TGCTAACACTATATATAATTTATGATAGGTAAATTTACGTTAAAGTAATTTATCTCCA 1058
Query 1103 cttttc---------ctactttattattcttttcctctttattttctcatttattggctt 1153
|||||| ||||||||| || ||||| || |||||||||| | |||| |||
Sbjct 1059 CTTTTCTAATGATAACTACTTTATGGTTTTTTTCGTCGTTATTTTCTCGTATATTTTCTT 1118
Query 1154 tacagatta-tat-t-tG-A----AA-TTTGTAACTAT-TTTTGATGTATCTAAAAACAT 1203
||||||||| ||| | | | || ||||||||||| |||| ||||||||||||||||
Sbjct 1119 TACAGATTAATATCTATATATTTTAAATTTGTAACTATGTTTT-ATGTATCTAAAAACAT 1177
Query 1204 TTCACATAACAATTTCTTAAGAAAACTAAGAAA-ACTGTTGGTATATTTTTTGAC--TAA 1260
||||||||||||||||||||||||| ||||||| | ||||||||||||||| || |||
Sbjct 1178 TTCACATAACAATTTCTTAAGAAAAATAAGAAATA-TGTTGGTATATTTTT-GAAAGTAA 1235
Query 1261 -AATGGTTTCCAAA-AAGATTTTGAAACGAACTAAAATCTTCATTA-CAAAACCAATTTT 1317
|| | || ||| || |||| |||| |||||||||||||| | |||||||| || |
Sbjct 1236 CAA-G-TTACCATTCAATATTT-GAAAAAAACTAAAATCTTCAAAAACAAAACCA-TTAT 1291
Query 1318 AAAAC-TACAAAACAAATATTCATGGTTTTAAGTTT-CTTTTTTCTTTCCTAGTTACGTG 1375
||||| |||||||| ||| ||||||||||||||||| ||||||||||||||| ||| |||
Sbjct 1292 AAAACCTACAAAACCAATTTTCATGGTTTTAAGTTTTCTTTTTTCTTTCCTAATTATGTG 1351
Query 1376 GGAATACGTTATTAAATTCAGGACCCATGAGAGGCGTAGGGAACAAGAGCATGTGCATAT 1435
||| || | |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1352 GGATTAAATCATTAAATTCAGGACCCATGAGAGGCGTAGGGAACAAGAGCATGTGCATGT 1411
Query 1436 TCATGGGTCTTTCAAATTCAGTCCATCCTC-TTCATGCTAATGTGCCC 1482
|||||||||||||||||||||||||||| | || |||||||||| |||
Sbjct 1412 TCATGGGTCTTTCAAATTCAGTCCATCCCCATT-ATGCTAATGTACCC 1458
> Ahg319024 jgi|Araly1|319024|fgenesh1_pm.C_scaffold_3002040
Length=729
Score = 641 bits (347), Expect = 0.0
Identities = 604/722 (84%), Gaps = 41/722 (6%)
Strand=Plus/Plus
Query 96 TATGAACCTTAAGGAGACGGAGCTTTGTCTTGGCCTCCCCGGAGGCACTGAAACCGTTGA 155
||||||||| |||| ||||||||| |||||||| |||||||| ||| ||||| |||||||
Sbjct 15 TATGAACCTCAAGGCGACGGAGCTCTGTCTTGGTCTCCCCGGCGGCGCTGAAGCCGTTGA 74
Query 156 AAGTCCGGCCAAGTCGGGTGTTGGGAA-CAAGAGAGGCTTCTCCGAGACCGTTGATCTCA 214
|| || ||||| || || | |||||| |||||||||||||||||||||||||||||| |
Sbjct 75 GAGCCCTGCCAAATC-GGCGGTGGGAAGCAAGAGAGGCTTCTCCGAGACCGTTGATCTTA 133
Query 215 AACTTAATCTTCAATCTAACAAACAAGGACAT--GTGGATCTCAAC-AC-T-AATGGAGC 269
|| |||||||||||||||||| |||| | | || ||||||||| || | || |||
Sbjct 134 TGCTCAATCTTCAATCTAACAAAGAAGG-C-TCCGTCGATCTCAACAACGTCGCTGCAGC 191
Query 270 TCCCAAGGAGAAGACCT-TCCTTAAAGACCCTTCTAAGCCTCCTGCTAAAGCACAAGTGG 328
||| |||||||||| || ||| ||||| |||||||||||||||||||||||||||||||
Sbjct 192 TCCTAAGGAGAAGA-CTACCCTCAAAGATCCTTCTAAGCCTCCTGCTAAAGCACAAGTGG 250
Query 329 TGGGTTGGCCACCGGTGAGGAACTACCGGAA-AA-ATGTTATGGCTAATCAGAAG---AG 383
|||| |||||||| |||||||||||| |||| || ||| ||| || | |||||| ||
Sbjct 251 TGGGATGGCCACCTGTGAGGAACTACAGGAAGAACATG--ATGACTCAGCAGAAGACCAG 308
Query 384 CGGC---G-A-A-G-CAG-A--G-G-AGGCAATGAGTAGTGGTGGAGGAACCGTC---G- 427
||| | | | | ||| | | | |||| ||| | ||||||||| | ||| |
Sbjct 309 TGGCGAGGAAGAGGCCAGCAGCGAGAAGGCCGGGAGCGGCGGTGGAGGAGCGGTCGGAGC 368
Query 428 C--CTTTGTGAAGGTTTCCATGGATGGAGCTCCTTATCTTCGGAAGGTTGACCTCAAGAT 485
| ||| |||||||| |||||||| || ||||| ||||| |||| ||||||||||||||
Sbjct 369 CGGCTTGGTGAAGGTGTCCATGGACGGTGCTCCCTATCTGAGGAAAGTTGACCTCAAGAT 428
Query 486 GTACACCAGCTACAAGGATCTCTCTGATGCCTTGGCCAAAATGTTCAGCTCCTTTACCAT 545
||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 429 GTACAAAAGCTACCAGGATCTCTCTGATGCCTTGGCCAAAATGTTCAGCTCCTTTACTAT 488
Query 546 GGGGAGTTATGGAGCACAAGGGATGATAGATTTCATGAACGAGAGTAAAG-TGATGGATC 604
||| | |||||||||||||| ||||||||||||||||||||||| || | | ||| |||
Sbjct 489 GGGAAACTATGGAGCACAAGGAATGATAGATTTCATGAACGAGAGCAA-GCTTATGAATC 547
Query 605 TGTTGAACAGTTCTGAGTATGTTCCAAGCTACGAGGACAAAGATGGTGACTGGATGCTCG 664
| |||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 548 TCCTGAATAGTTCTGAGTATGTCCCAAGCTACGAGGACAAAGATGGTGATTGGATGCTCG 607
Query 665 TTGGTGATGTCCCCTGGCCGATGTTTGTCGAGTCATGCAAACGTTTGCGCATAATGAAAG 724
| || |||||||| ||| |||||||||||||| ||||||||||||||||| ||||| |
Sbjct 608 TCGGCGATGTCCCATGGGAAATGTTTGTCGAGTCCTGCAAACGTTTGCGCATTATGAAGG 667
Query 725 GATCCGAAGCAATTGGACTTGCTCCAAGAGCAATGGAGAAGT--T-CAAGAACAGATCAT 781
|||| |||||||||||||||||||| |||||||||||||||| | |||||||||||| |
Sbjct 668 GATCTGAAGCAATTGGACTTGCTCCGAGAGCAATGGAGAAGTACTGCAAGAACAGATCTT 727
Query 782 GA 783
||
Sbjct 728 GA 729
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55459396720
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5