BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14560.1
Length=837
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946923 jgi|Araly1|946923|scaffold_703152.1 893 0.0
Ahg930309 jgi|Araly1|930309|scaffold_302766.1 425 2e-118
Ahg936765 jgi|Araly1|936765|scaffold_500956.1 158 8e-38
Ahg952206 jgi|Araly1|952206|scaffold_45700004.1 143 2e-33
Ahg351649 jgi|Araly1|351649|fgenesh1_pg.C_scaffold_6002242 143 2e-33
> Ahg946923 jgi|Araly1|946923|scaffold_703152.1
Length=549
Score = 893 bits (483), Expect = 0.0
Identities = 528/550 (96%), Gaps = 1/550 (0%)
Strand=Plus/Plus
Query 105 TTAAAGTATAGTGAGAGAATATGGAAGTCACCAATGGGCTTAACCTTAAGGACACAGAGC 164
||||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||
Sbjct 1 TTAAAGTATAGTGAGAGAAAATGGAAGTCATCAATGGGCTTAACCTTAAGGACACCGAGC 60
Query 165 TTCGTTTGGGATTACCCGGAGCACAAGAAGAACAACAACTAGAACTTTCTTGCGTCAGAA 224
|||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||
Sbjct 61 TTCGTTTGGGATTACCTGGAGCACAAGAAGAACAACAACAAGAAGTTTCTTGCGTCAGAA 120
Query 225 GCAACAACAAGCGCAAGAACAACGACTCAACAGAAGAATCTGCTCCTCCTCCTGCAAAAA 284
||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 121 GCAACAACAAGCGAAAGAACAACGACTCAAAAGAAGAATCTGCTCCTCCTCCTGCCAAAA 180
Query 285 CACAAATCGTTGGATGGCCTCCAGTGAGATCTAACCGTAAGAACAACAACAACAAAAACG 344
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 181 CACAAATCGTGGGATGGCCTCCATTGAGATCTAACCGTAAGAACAACAACAACAAAAACG 240
Query 345 TGAGTTATGTGAAAGTGAGTATGGACGGAGCTCCATATCTCCGTAAGATAGATCTCAAGA 404
| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 241 TTAGTTATGTGAAAGTGAGTATGGACGGAGCACCATATCTCCGTAAAATAGATCTCAAGA 300
Query 405 TGTACAAAAACTATCCAGAGCTTCTCAAAGCACTAGAGAACATGTTCAAGTTCACAGTAG 464
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 301 TGTACAAAAACTATCCAGAGCTTCTCAAAGCACTCGAGAACATGTTCAAGTTCACAGTAG 360
Query 465 GTGAATATTCCGAGAGAGAAGGCTACAAAGGATCTGGATTTGTACCTACTTATGAAGACA 524
|||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 361 GTGAATATTCGGAAAGAGAAGGCTACAAAGGATCAGGATTTGTACCTACTTATGAAGACA 420
Query 525 AAGATGGAGATTGGATGTTGGTCGGTGATGTTCCATGGGACATGTTCTCTTCATCTTGTC 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AAGATGGAGATTGGATGTTGGTCGGTGATGTTCCATGGGACATGTTCTCTTCATCTTGTC 480
Query 585 AAAAACTCAGAATCATGAAAGGATCCGAAGCTCCTACTGCCTTATGATCCATTGTCTCAA 644
||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||
Sbjct 481 AAAAACTCAGAATCATGAAAGGATCTGAAGTTCCTCCTGCCTTATGATCCATTGTCTCAA 540
Query 645 AACACCTTTT 654
| ||||||||
Sbjct 541 A-CACCTTTT 549
> Ahg930309 jgi|Araly1|930309|scaffold_302766.1
Length=565
Score = 425 bits (230), Expect = 2e-118
Identities = 414/497 (83%), Gaps = 35/497 (7%)
Strand=Plus/Plus
Query 142 GCTTAACCTTAAGGACACAGAGCT-TCGT-TTGGGATTACCCGG-AG--CACAAG-AA-- 193
|||||||||||||||||||||||| | || || |||||||| || || |||| | ||
Sbjct 44 GCTTAACCTTAAGGACACAGAGCTAT-GTCTT-GGATTACCAGGAAGAACACAGGAAATC 101
Query 194 GAACAACAACTAGAACTTTCTTGCGTCAGAAGCAACAACAAGCG-CAA---GAA-CAACG 248
|| || ||| ||| |||||||||| | ||||||||||||||| ||| ||| |||
Sbjct 102 AAAGAAGAACAAGAGGTTTCTTGCGTTAAAAGCAACAACAAGCGTCAATTTGAAGAAAC- 160
Query 249 AC-TCA--ACAGAAGAATCTGCTCCTCCTCCTGCAAAAACACAAATCGTTGGATGGCCTC 305
| | | | |||||||||| | |||||| | | ||||| ||||||||||||||||| |
Sbjct 161 TCGTGAGGA-AGAAGAATCTACACCTCCTAC--C-AAAACTCAAATCGTTGGATGGCCAC 216
Query 306 CAGTGAGATCTAACCGTAAGAACAACAACAACAAAAACGTGAGTTATGTGAAAGTGAGTA 365
| ||||||||| ||||||| ||||||||| | ||||| || |||||||||||||
Sbjct 217 CGGTGAGATCTTCCCGTAAG---AACAACAAC---AGTGTGAGCTACGTGAAAGTGAGTA 270
Query 366 TGGACGGAGCTCCATATCTCCGTAAGATAGATCTCAAGATGTACAAAAACTATCCAGAGC 425
||||||||||||| || ||||| ||||| |||||||||| ||||||||||| || ||||
Sbjct 271 TGGACGGAGCTCCTTACCTCCGCAAGATCGATCTCAAGACATACAAAAACTACCCCGAGC 330
Query 426 TTCTCAAAGCACTAGAGAACATGTTC-AAGTTCACAG-TAGGTGAATATTCCGAGAGAGA 483
||||||| || |||||||||||||| ||| |||| | | |||||||||| ||||||||
Sbjct 331 TTCTCAAGGCGTTAGAGAACATGTTCAAAG-TCAC-GATTGGTGAATATTGTGAGAGAGA 388
Query 484 AGGCTACAAAGGATCTGGATTTGTACCTACTTATGAAGACAAAGATGGAGATTGGATGTT 543
||| ||||||||||||||||||||||| || || ||||| ||||||||||||||||||||
Sbjct 389 AGGATACAAAGGATCTGGATTTGTACCAACATACGAAGATAAAGATGGAGATTGGATGTT 448
Query 544 GGTCGGTGATGTTCCATGGGACATGTTCTCTTCATCTTGTCAAAA-ACTCAGAATCATGA 602
||| ||||||||||||||||||||||||||||| |||||| || | ||||||||||||||
Sbjct 449 GGTTGGTGATGTTCCATGGGACATGTTCTCTTCTTCTTGT-AAGAGACTCAGAATCATGA 507
Query 603 AAGGATCCGAAGCTCCT 619
|||||||||| ||||||
Sbjct 508 AAGGATCCGATGCTCCT 524
> Ahg936765 jgi|Araly1|936765|scaffold_500956.1
Length=197
Score = 158 bits (85), Expect = 8e-38
Identities = 113/126 (90%), Gaps = 3/126 (2%)
Strand=Plus/Plus
Query 495 GATCTGGATTTGTACCTACTTATGAAGACAAAGATGGAGATTGGATGTTGGTCGGTGATG 554
||| |||||||||||| || || || || |||||| |||||||||||||||| |||||||
Sbjct 33 GAT-TGGATTTGTACCAACGTACGAGGATAAAGATCGAGATTGGATGTTGGTTGGTGATG 91
Query 555 TTCCATGGGACATGTTCTCTTCATCTTGTCAAAA-ACTCAGAATCATGAAAGGATCCGAA 613
|||||||||||||||||||||| || ||| |||| ||||||||||||||||||||||||
Sbjct 92 TTCCATGGGACATGTTCTCTTCTTCGTGT-AAAAGACTCAGAATCATGAAAGGATCCGAT 150
Query 614 GCTCCT 619
||||||
Sbjct 151 GCTCCT 156
> Ahg952206 jgi|Araly1|952206|scaffold_45700004.1
Length=206
Score = 143 bits (77), Expect = 2e-33
Identities = 103/115 (90%), Gaps = 3/115 (3%)
Strand=Plus/Plus
Query 495 GATCTGGATTTGTACCTACTTATGAAGACAAAGATGGAGATTGGATGTTGGTCGGTGATG 554
||| |||||||||||| || || || || ||||||||||||||||||||||| |||||||
Sbjct 33 GAT-TGGATTTGTACCAACGTACGAGGATAAAGATGGAGATTGGATGTTGGTTGGTGATG 91
Query 555 TTCCATGGGACATGTTCTCTTCATCTTGTCAAAA-ACTCAGAATCATGAAAGGAT 608
|||||||||||||||||||||| || ||| |||| |||| |||||||||||||||
Sbjct 92 TTCCATGGGACATGTTCTCTTCTTCCTGT-AAAAGACTCGGAATCATGAAAGGAT 145
> Ahg351649 jgi|Araly1|351649|fgenesh1_pg.C_scaffold_6002242
Length=633
Score = 143 bits (77), Expect = 2e-33
Identities = 103/115 (90%), Gaps = 3/115 (3%)
Strand=Plus/Plus
Query 495 GATCTGGATTTGTACCTACTTATGAAGACAAAGATGGAGATTGGATGTTGGTCGGTGATG 554
||| |||||||||||| || || || || ||||||||||||||||||||||| |||||||
Sbjct 480 GAT-TGGATTTGTACCAACGTACGAGGATAAAGATGGAGATTGGATGTTGGTTGGTGATG 538
Query 555 TTCCATGGGACATGTTCTCTTCATCTTGTCAAAA-ACTCAGAATCATGAAAGGAT 608
|||||||||||||||||||||| || ||| |||| |||| |||||||||||||||
Sbjct 539 TTCCATGGGACATGTTCTCTTCTTCCTGT-AAAAGACTCGGAATCATGAAAGGAT 592
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30955808604
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5