BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14590.1
Length=1527
Score E
Sequences producing significant alignments: (Bits) Value
Ahg355343 jgi|Araly1|355343|fgenesh1_pg.C_scaffold_7002516 1642 0.0
Ahg347700 jgi|Araly1|347700|fgenesh1_pg.C_scaffold_5001092 150 2e-35
> Ahg355343 jgi|Araly1|355343|fgenesh1_pg.C_scaffold_7002516
Length=2181
Score = 1642 bits (889), Expect = 0.0
Identities = 1019/1082 (94%), Gaps = 7/1082 (1%)
Strand=Plus/Plus
Query 404 GAATTGGAATTAGTTTGTTTCTTGAGAAATGGGAATGCTTGCTTGATGATTCT-CCATTG 462
||||||| | ||||||||||||||||||||||| || ||||| || || | | || |||
Sbjct 451 GAATTGG--TGAGTTTGTTTCTTGAGAAATGGGATTGTTTGCTGGAAGA-TATGCCCTTG 507
Query 463 GTGTTGACTAGTGCTCTGTATAGTTTTCTTCGGTTATTAGCGGATCATTATAGGGTTTTA 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 508 GTGTTGACTAGTGCTCTGTATAGTTTTCTTCGGTTATTAGCGGATCATTATAGGGTTTTA 567
Query 523 GGCGTTGTGAAACTGGAGAATGTGAAGAGATTGGAGATCAAATTCTGTGTTAAAATGTTT 582
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 568 GGTGTTGCGAAACTGGAGAATGTGAAGAGATTGGAGATCAAATTCTGTGTTAAAATGTTT 627
Query 583 AGAGAGCAGCTTCATTTAAGTTTGAAGATTGGACGGGACCTTATCCTGTTGTTGCAGGAT 642
||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||
Sbjct 628 AGAGAGCAGCTTCATTTAAGTATGAAGATCGGACGGGACGTTATCCTGTTGTTGCAGGAT 687
Query 643 CTGTCTCATGTCTCTGAGTTCAGAGAGATATGGAACGATTTGGTGTCGAACCATTGCTCT 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 688 CTGTCTCATGTCTCTGAGTTCAGAGAGATATGGAACGATTTGGTGTCGAACCATTGCTCT 747
Query 703 GAGATATACCAGTTGAAGACTTCTAGTAGATACTTCCTTCTTCGAATCACTCCTGAGATG 762
|| || ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 748 GATATTTACCAGTTGAAGACTTCAAGTAGATACTTCCTTCTTCGAATAACTCCTGAGATG 807
Query 763 GAAACACAATTAAGGTTTTTGCTAGGAAATGTTAAATTGGGAAGTCATAAGCGGCATCAG 822
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 808 GAAACACAATTAAGGTTTTTGCTTGGAAATGTGAAATTGGGAAGTCATAAGCGGCATCAG 867
Query 823 ATATGGTTCTTGAAGAAGTTTCTTTTGGGTCCGGAGAAAGAAACACTTTTGATAGATATA 882
|| |||||||||||||||||||| |||||||| ||||||||||| |||||||| || |||
Sbjct 868 ATGTGGTTCTTGAAGAAGTTTCTCTTGGGTCCTGAGAAAGAAACGCTTTTGATCGACATA 927
Query 883 GTGAGATTCGTTTGCTGTGTTATTCATCCAACTAACGAAATCATCAGATCAGAGATCATG 942
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 928 GTGAGATTCGTTTGCTGCGTTATTCATCCAACTAACGAAATCATCAGATCAGAGATCATG 987
Query 943 CCAAGATGGGCTATTATAGGTTGGCTTTTGGAACTGTGTAGGCAAAATCATCACATCGAG 1002
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 988 CCAAGATGGGCTATTATAGGTTGGCTTTTGGAACTGTGTAGGCAAAATCATCACATCGAA 1047
Query 1003 CGAAGCGTTATGCTGGCTCTGTTTTACGACTGGCTCTTCTTTGACGAAAGAATCGATAAT 1062
||||| |||| |||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 1048 CGAAGTGTTAAGCTGGCTCTGTTTTACGATTGGCTCTTCTTTGACGAAAGATTCGATAAT 1107
Query 1063 ATTATGAATGTTGAACCTGCTGCTCTCTTGATGGTATGGTCAATACCGCAGTATCCACAC 1122
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1108 ATTATGAATGTTGAACCTGCTGCTCTCTTGATGGTATGGTCGATACCACAGTATCCACAC 1167
Query 1123 ATCACTCACTCCTTACTTGAATTCTTACTTCATCTTGTCGAAACTTATGACATAACCCGT 1182
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||| | ||
Sbjct 1168 ATCACTCACTCCTTACTTGAATTCGTACTTCATCTTGTGGAAACTTATGACATAAGCAGT 1227
Query 1183 CGCGATACGATTGTAAGAGGTTTGACGTCAGCATTCAGAGAAATTGAGCGAAAAGGAGTT 1242
|| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1228 CGAGATATTATTGTAAGAGGTTTGACGTCAGCATTCAGAGAAATTGAGCGAAAAGGAGTT 1287
Query 1243 ATTCGGTCGCTGGATATATTCCTAGCAAATCCTGCACTTGCACCAGATTTGAAGAAGAAG 1302
||||||||||| |||||||||||| |||||||||| |||||| |||||||||||||||||
Sbjct 1288 ATTCGGTCGCTAGATATATTCCTAACAAATCCTGCGCTTGCAGCAGATTTGAAGAAGAAG 1347
Query 1303 CTAGCAAATCTGTTGTCATGTCATCAGGAGAAGACGGTTCATGTGAATCTCAATCAAGTT 1362
||||||||||||||| |||||||||||| |||| | ||| |||||||||| ||||| ||
Sbjct 1348 CTAGCAAATCTGTTGACATGTCATCAGGTGAAG--G-TTCCTGTGAATCTCCATCAACTT 1404
Query 1363 AGTGTTCTTTCTAAGCAAACAGTTCTTTCTTCGGAAGCTAATTTAAAAGATTGCAGCACC 1422
||||||| ||||||||||||| |||||||||| ||||||||||||||||| |||||||||
Sbjct 1405 AGTGTTCCTTCTAAGCAAACATTTCTTTCTTCAGAAGCTAATTTAAAAGAATGCAGCACC 1464
Query 1423 AAAATTGTTGATACTCCTGACCAGAAGTTGGACAATTCCGTTGAAAATCCAGCAAAAAAC 1482
||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||| ||
Sbjct 1465 AAAATTGTTGATATTCCTGATCAGAAGTTGGACAACTCCGTTGAAAATCCAGCAAAACAC 1524
Query 1483 CA 1484
||
Sbjct 1525 CA 1526
Score = 669 bits (362), Expect = 0.0
Identities = 394/410 (96%), Gaps = 0/410 (0%)
Strand=Plus/Plus
Query 1 ATGGAGAACCACTTTGTTACATCGAAACTGATCCGTGTCTCTCTACACGAAGTTGAGAAC 60
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 1 ATGGAGAACCACTTTGTTACATCGAAACTGATTCGTGACTCTCTACACGAAGTTGAGAAC 60
Query 61 CAGCTCGAACTATCACTACGTCAAGCCTTCGAGAATCTCCAGCCGAAACTACGACCACCG 120
||||||||||| ||| ||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 61 CAGCTCGAACTGTCAATACGTCAAGCCTTTGAGTCTCTCCAGCCGAAACTACGACCACCG 120
Query 121 TTCTCCTTAGAACTCCCAGACCCACAAGAGTATCTTGAGCTCAATAAAGCCATCGTCTAT 180
|| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTTTCCTTAGAAATCCCAGAGCCACAAGAGTATCTTGAGCTCAATAAAGCCATCGTCTAT 180
Query 181 GGAGTTTTATGCGAACCAAATTCCTCTAAAACCCACATCAAGCACTTACATGCTCTCGTC 240
||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||
Sbjct 181 GGAGTTTTATGCGAACCCAATTACTCTAAAACCCATATCAAGCACTTACATGCTCTCGTC 240
Query 241 ACTGATGGGTACGCGTTTTTCACTAGTTTACTTATTGGAATCGTTGTTGAATTGTATGTT 300
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 241 ACTGATGGGTATGCGTTTTTCACTAGTTTACTTATTGGAATCGTTGTTGAATTGCATGTT 300
Query 301 AAGCTTGTTGATTCCGCTAAGATTCAGCTTATTTGGGTAACTAAGGAGATGATTGATGTT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AAGCTTGTTGATTCCGCTAAGATTCAGCTTATTTGGGTAACTAAGGAGATGATTGATGTT 360
Query 361 TCAAGTGTGGGGATTGAGGATTTGGTTGTGTCGTTGTTGCGACGAATTGG 410
|||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 361 TCAAGTGTGGGGATTGAGGATTTGCTTGTGTCGTTGTTGCGACGAATTGG 410
> Ahg347700 jgi|Araly1|347700|fgenesh1_pg.C_scaffold_5001092
Length=435
Score = 150 bits (81), Expect = 2e-35
Identities = 122/141 (87%), Gaps = 5/141 (4%)
Strand=Plus/Plus
Query 980 GTAGGCAAAATCATCACATCGAGCGAAGCGTTATGCTGGCTCTGTTTTACGACTGGCTCT 1039
|||||||||||||||||| ||| | ||| | || ||| |||||||||||||| |||||||
Sbjct 260 GTAGGCAAAATCATCACACCGAACAAAGTGCTAAGCTCGCTCTGTTTTACGATTGGCTCT 319
Query 1040 TCTTTGACGAAAGAATCG---ATAATATTATGAATGTTGAACCTGCTGCTCTCTTGATGG 1096
|||| || || ||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 320 TCTTCGATGACAGAATCGACAATATTATTATGAATGTTGAACCTGCTGCTCTCTTGATGG 379
Query 1097 TATGGTCAATACCGCAGTATC 1117
|| | |||| ||||||||||
Sbjct 380 TACGATCAA--CCGCAGTATC 398
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57173457745
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5