BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14605.1
Length=1787
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946917 jgi|Araly1|946917|scaffold_703146.1 2204 0.0
> Ahg946917 jgi|Araly1|946917|scaffold_703146.1
Length=1539
Score = 2204 bits (1193), Expect = 0.0
Identities = 1415/1521 (93%), Gaps = 19/1521 (1%)
Strand=Plus/Plus
Query 155 AATGCAAAGTCTTAGTCAACTTGGACCTTCAGAGATTTTCCTTGTCGCCAGAAGAGAAAA 214
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 21 AATGCAAAGTCTTAGTCAAATTGGACCTTCAGAGATTTTCCTTGTCGCCAGAAGAGAAAA 80
Query 215 ACCCAGTAC--G---AG--------A--GCACAGCTTTGGTTTACGGGAAGACTCTCTTT 259
||||||||| | || | |||||||||||||| || |||||| | |||||
Sbjct 81 ACCCAGTACTAGCTTAGTTATTACCAGGGCACAGCTTTGGTTCACAGGAAGATTGTCTTT 140
Query 260 TAGACAAGAAACAAATGGGATTCGTTTAAAGAATAGAGTAGAGTTTAGTCCAAGACCTGT 319
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 141 TCGACAAGAAACAAATGGGATTCGTTTAAAGAATAGAGTAGAGTTTAGTCCGAGACCTGT 200
Query 320 ACCTCCAAATCTGATCGCAGCAGAGAAAGAAGAAGCTAAAGCTGTTTTAACTCTATTCTT 379
|||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 201 ACCTCCTAATCTGATTGCTGCAGAGAAAGAAGAAGCTAAAGCTGTTTTAACTCTATTCTT 260
Query 380 CAAGAAGCAAGGTCTTAGCAACAGTCTCTCTTCTCGGTTAATCAACAAATCCGATCTATT 439
|||||||||||||||||||||||||||||||||||| |||||||| ||||| |||| |||
Sbjct 261 CAAGAAGCAAGGTCTTAGCAACAGTCTCTCTTCTCGCTTAATCAATAAATCTGATCAATT 320
Query 440 CATTGACCATTTAGTGTCCAGGCTCCATTCTGTTCATAAAGCTCGATACCTCGTAGGAAG 499
|||||| |||||||| || || || ||||||||||||||||| || || |||||||||||
Sbjct 321 CATTGATCATTTAGTCTCTAGACTTCATTCTGTTCATAAAGCACGGTATCTCGTAGGAAG 380
Query 500 AGAGCTTACTACACTTGAGATTCGAGATTCTCTCATTCCTTACCTCGAACAACTTCATGA 559
||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||
Sbjct 381 AGAGCTTACTACACTTGAGATTCGAGATTCTCTTATTCCTTATCTCGAAGAACTTCATGA 440
Query 560 AGAACATGGTGATCTTCTCGCTGAGCTTGTTGTGAGCTTCCCTGATCCACCAGCTGA-AC 618
|||||| |||||||||||| |||||||||||||||||| |||||||||||||||||| |
Sbjct 441 AGAACACGGTGATCTTCTCTCTGAGCTTGTTGTGAGCTACCCTGATCCACCAGCTGAGA- 499
Query 619 CTAGACTTGTTGCTTCATCTCCAGTTTCTG-TCCTACCACCTCGTGGTGACACAGATTCT 677
|||||||||||||||||||| |||| ||| | | ||| |||||||||||||||||||||
Sbjct 500 CTAGACTTGTTGCTTCATCTTTAGTTCCTGTTTC-ACCGCCTCGTGGTGACACAGATTCT 558
Query 678 GCTGCAGACACTCGTAAACTCAGAGCGGTGTCTCGAGTCAGCGAACTTGACACAGAAGGT 737
|||||||| ||||| ||||||||||| |||||||| || || ||||||||| ||||||||
Sbjct 559 GCTGCAGAGACTCGGAAACTCAGAGCTGTGTCTCGGGTTAGTGAACTTGACCCAGAAGGT 618
Query 738 GCATTACGTCCTCAGACCCTTTACCTTCTTGACCTCGGTTTAAACCTCGAGCAGATCAAA 797
||||||||||||||||| ||||||||||||||||| ||||||||| | ||||||||||||
Sbjct 619 GCATTACGTCCTCAGACTCTTTACCTTCTTGACCTTGGTTTAAACTTAGAGCAGATCAAA 678
Query 798 ACGATCACTCGAAAGTTCGCTGCCTTTCCTTATTACAGCCTCGATGGAAAAATAAAACCT 857
||||||||||| ||||| ||||| |||||||||||||||||||| |||||||| |||||
Sbjct 679 ACGATCACTCGTAAGTTTGCTGCTTTTCCTTATTACAGCCTCGACGGAAAAATCAAACCC 738
Query 858 GTTGTGGAATTCCTTCTAGACCTCGGAATTCCTAAATCAGATATCCCCACAATCCTCTGC 917
||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 739 GTTGTTGAGTTCCTTCTAGACCTTGGAATTCCTAAATCAGATATCCCCACAATCCTCTGC 798
Query 918 AAACGCCCACAGATATGCGGAATCAGCCTAACCGATAACCTGAAACCGACAATGGCCTTT 977
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 799 AAACGTCCACAGATCTGCGGAATCAGCCTAACCGATAACCTGAAACCGACAATGGCCTTT 858
Query 978 CTTGAGACACTTGGCATTGACAAGAACCAATGGGCAAAGATCATTTCCCGTTTCCCAGCC 1037
|||||||||||||||||||| ||||| || |||||||||||||||| ||||||||||||
Sbjct 859 CTTGAGACACTTGGCATTGATAAGAATCAGTGGGCAAAGATCATTTACCGTTTCCCAGCA 918
Query 1038 ATCCTCACTTACAGCCGCCAGAAACTTACTTCAACTGTCGAGTTCTTATCACAAACTGGT 1097
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 919 ATCCTCACTTACAGCCGCCAGAAACTTACTTCAACTGTCGAGTTCTTATCCCAAACCGGT 978
Query 1098 CTCACAGAAGAACAGATAGGGAGAATCCTAACCCGATGTCCAAACATCATGAGTTACAGT 1157
||||||||||||||||| ||||||||||||||||| ||||| ||||| ||||||||||||
Sbjct 979 CTCACAGAAGAACAGATTGGGAGAATCCTAACCCGCTGTCCTAACATAATGAGTTACAGT 1038
Query 1158 GTAGAAGACAAGCTCCGTCCAACTATGGAGTACTTTAGATCGCTAAATGTCGATGTTGCG 1217
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1039 GTCGAAGACAAGCTCCGTCCAACTATGGAGTACTTTAGATCGCTAAATGTCGATGTTGCG 1098
Query 1218 GTTCTCCTACATCGATGTCCCCAAACGTTTGGATTAAGCATAGAGTCGAATTTGAAGCCA 1277
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1099 GTTCTCCTACATCGATGTCCCCAAACGTTTGGATTAAGCATAGAGTCGAATTTGAAGCCT 1158
Query 1278 GTAACAGAGTTCTTCCTCGAAAAGGGTTTTGGTTTAGATGAAATTGGAATCATGATCTCT 1337
||||||||||||||| | ||||| ||||||||||||||||| ||||| |||||||||||
Sbjct 1159 GTAACAGAGTTCTTCTTGGAAAAAGGTTTTGGTTTAGATGAGATTGGGATCATGATCTCC 1218
Query 1338 AGATATGGAGCTTTGTACACATTCAGCTTGAAAGAGAATGTCATGCCGAAATGGGATTAC 1397
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 1219 AGATATGGAGCTTTGTACACTTTCAGCTTGAAAGAGAATCTCATGCCGAAATGGGATTAC 1278
Query 1398 TTTCAGACAATGGACTATCCAAAATCCGAGCTTGTGAAGTTCCCTCAGTTTTTTGGGTAC 1457
|||||||||||||| ||||| |||||||||| ||||||||||| |||||||||||||||
Sbjct 1279 TTTCAGACAATGGATTATCCGCAATCCGAGCTCGTGAAGTTCCCGCAGTTTTTTGGGTAC 1338
Query 1458 AGTTTACAAGAGAGGATCAAGCCGAGATATGAGCTGGTTCAGAGAAGTGGAGTGAGACTG 1517
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1339 AGTTTACAAGAGAGGATCAAGCCGAGATACGAGCTGGTGAAGAGAAGTGGAGTGAGACTG 1398
Query 1518 CTGTTGAACCAGGTTTTATCGCTGTCGGGAATTGAGTTCGAGAAAGTTGTTAAGAAGAAG 1577
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1399 CTGTTGAACCAGGTTTTGTCGCTCTCGGGAATTGAGTTCGAGAAAGTTGTTAAGAAGAAG 1458
Query 1578 ATGATGAAACTTGTGTCTAATAACGTAATTGCTGAACAAAGTAGTGGTGGTTTGTTGTGA 1637
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1459 ATGATGAAACTTGTGTCTAATAACGTAATTGCTAAACAAAGTAGTGGTGGTTTGTTGTGA 1518
Query 1638 ATGTTTTAGTTTTAGAGTAAT 1658
|||||||||||||||||||||
Sbjct 1519 ATGTTTTAGTTTTAGAGTAAT 1539
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67076921445
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5