BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14622.1
Length=1617
Score E
Sequences producing significant alignments: (Bits) Value
Ahg890876 jgi|Araly1|890876|Al_scaffold_0007_2862 1328 0.0
> Ahg890876 jgi|Araly1|890876|Al_scaffold_0007_2862
Length=1011
Score = 1328 bits (719), Expect = 0.0
Identities = 933/1031 (90%), Gaps = 35/1031 (3%)
Strand=Plus/Plus
Query 386 ATGATGAAGATCCAGCCGATTAACAACGATTTGCCGGCGAATAGAGTGGAATCATCAACC 445
||||||||||| ||||||||| |||||||||| |||||||||||||| ||||||||||||
Sbjct 1 ATGATGAAGATTCAGCCGATTCACAACGATTTTCCGGCGAATAGAGTAGAATCATCAACC 60
Query 446 AAACCAGTGCTTAAGTCTCGTCTCAAGCGTTTATTAGATCGACCGTTCACGAGAATCTCA 505
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 61 AAACCAGTGCTTAAGTCTCGTCTCAAACGTCTATTAGATCGACCGTTCACGAGAATCTCA 120
Query 506 AACTCAGAGAAATTACTCATCTCTGGAGATGGAGTCGTCGCTGGAACAGAGTTCGAGCCA 565
||||||||||||| ||||||| | ||||||||||||||||| ||||||||||||||||||
Sbjct 121 AACTCAGAGAAATCACTCATCGCCGGAGATGGAGTCGTCGCCGGAACAGAGTTCGAGCCA 180
Query 566 AGCTTAGCGAAAATGGTTCAAAACTATATGGAAGAAAACAACGACAAGCAAACAAAGAA- 624
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AGCTTAGCGAAATTGGTTCAAAACTATATGGAAGAAAACAACGACAAGCAAACAAAGAAT 240
Query 625 --TGGTCGCAATACTCATCGTTGCAATTGTTTTAACGGGAACAATGATATCTCCGACGAT 682
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 241 GGTGGTCGCAATAATCATCGTTGTAATTGTTTTAACGGGAACAATGATATCTCCGACGAT 300
Query 683 GAACTCGATTTCTTCGATTATGACAATTTCAAGAGTTTGATTCAATGCGGAAGCTTCGTT 742
||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 301 GAACTCGATATCTTCGATTATGACCATTTCAAGAGTTTGATTCAATGTGGAAGCTTCGTT 360
Query 743 GAGAAGAGTCTTTTAGTGGAAGCTACGAAGATTATAGAGAAGAACAAATCAGTTAAAAGA 802
||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 361 GAGAAGAATCTGTTAGTGGAAGCTACGAAGATTATAGAGAAGAACAAATCAGTCAAAAGA 420
Query 803 AAAGACGAATTGAGAAAGATTGTTGTTGATGAACTCTCATCTCTTGGTTACGACTCTTCA 862
||||||||||||||||||||||||||||||||||||| || ||| |||||||| ||||||
Sbjct 421 AAAGACGAATTGAGAAAGATTGTTGTTGATGAACTCTTATTTCTCGGTTACGATTCTTCA 480
Query 863 ATTTGTAAATCGAAATGGGATAAAACTCGTTCTATACCGGCCGGTGAGTATGAGTATATA 922
|||||||||||||||||||||||| |||| ||||||||||||||||| |||||||| |||
Sbjct 481 ATTTGTAAATCGAAATGGGATAAATCTCGCTCTATACCGGCCGGTGACTATGAGTACATA 540
Query 923 GATGTGATTGTGAACGGAGAGAGGTTGATAATCGACATTGATTTTAGATCGGAGTTTGAG 982
|||||||||||||||||||| ||||| |||| ||| |||||||||||||||||||||||
Sbjct 541 GATGTGATTGTGAACGGAGAAAGGTTTTTAATTGACGTTGATTTTAGATCGGAGTTTGAG 600
Query 983 ATCGCAAGGCAGACGAGTGGTTACAAGGAGTTGCTTCAATCTCTACCGTTGATTTTCGTC 1042
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ATCGCGAGGCAAACGAGTGGTTACAAGGAGTTGCTTCAATCTCTACCGTTGATTTTCGTC 660
Query 1043 GGAAAATCTGATAGGATTCGTCAGATTGTTTCTATAGTTTCGGAAGCGTCAAAACAGAGC 1102
|||||||||||| |||||||||||||||||||||| |||||||||||| | |||||||||
Sbjct 661 GGAAAATCTGATCGGATTCGTCAGATTGTTTCTATGGTTTCGGAAGCGGCGAAACAGAGC 720
Query 1103 TTGAAGAAGAAAGGTATGCATTTCCCGCCGTGGAGAAAAGCTGATTACATGCGCGCTAAG 1162
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 721 TTGAAGAAGAAAGGTATGCATTTCCCGCCGTGGAGAAAAGCTGATTACATGAGAGCTAAA 780
Query 1163 TGGCTATCTTCCTACACTCGAAACTCCGGCGaaaaaaaGCCGACGGTTACT-TCTGCCGC 1221
||||| ||||| || |||||| ||||||| ||||| ||||| ||||||| | ||||
Sbjct 781 TGGCTTTCTTCATATACTCGAGACTCCGGT-AAAAA--GCCGATGGTTACTATAA-CCGC 836
Query 1222 GAAAGTCGTAGCTGAACCGGAGCTAGATTCTTCGGAGATTGAGCTGATTTTCGAGGAGAA 1281
|| | |||||||||||||||||| |||| || | ||| || || | |
Sbjct 837 GACCGCCGTAGCTGAACCGGAGCT-GATT-TT------T-GAG--GA-----GA--A-AT 877
Query 1282 GGTCTTGTTGCCGCCATTGAAGTC-TC--C---GATTACGTCTGTTGGTAGAGATGATGA 1335
|||||| |||||| || ||||| || | ||||||||||| ||||| |||||||||
Sbjct 878 --TCTTGTCGCCGCCGTTAAAGTCGTCTTCTTCGATTACGTCTGGTGGTAAAGATGATGA 935
Query 1336 TGACGTGGCAGAGTCAGTGAAGAAAGAAGCAAAGGTCGTCACGGGATTAGCTTTACTGTT 1395
|||||||||||| | || |||| ||||||||||||||||||||||||||||||||||||
Sbjct 936 TGACGTGGCAGAACCGGTTAAGAGAGAAGCAAAGGTCGTCACGGGATTAGCTTTACTGTT 995
Query 1396 CAAAGAAAATC 1406
|||||||||||
Sbjct 996 CAAAGAAAATC 1006
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60601579795
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5