BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14630.1
Length=881
Score E
Sequences producing significant alignments: (Bits) Value
Ahg890875 jgi|Araly1|890875|Al_scaffold_0007_2861 1020 0.0
Ahg891850 jgi|Araly1|891850|Al_scaffold_0007_3836 433 1e-120
Ahg891847 jgi|Araly1|891847|Al_scaffold_0007_3833 405 3e-112
> Ahg890875 jgi|Araly1|890875|Al_scaffold_0007_2861
Length=669
Score = 1020 bits (552), Expect = 0.0
Identities = 632/671 (94%), Gaps = 4/671 (1%)
Strand=Plus/Plus
Query 80 ATGACGATAAAAAGTCTCTCTTTTCTTGCGGCTCTATCTCTCTTTGCTTTGACACTTCCA 139
||| |||| ||||||||||| |||||||| |||||||||||||| ||||||||| |||||
Sbjct 1 ATGGCGATGAAAAGTCTCTCCTTTCTTGCAGCTCTATCTCTCTTGGCTTTGACATTTCCA 60
Query 140 TTAGTAATTGCTTCCGATCCAAGCCCCCTTCAAGACTTT-TGTGTTGGTGTCAACACACC 198
||||| |||||||||||||||||||||||||||| ||| ||||| || || ||||||||
Sbjct 61 TTAGTCTTTGCTTCCGATCCAAGCCCCCTTCAAGA-TTTCTGTGTCGGCGTTAACACACC 119
Query 199 AGCAGATGGCGTGTTTGTGAATGGAAAGTTTTGCAAGGATCCAAGGATAGTTTTCGCGGA 258
|| |||||||||||||||||||||||| || ||||||||||||||||| |||| ||||||
Sbjct 120 AGTAGATGGCGTGTTTGTGAATGGAAAATTCTGCAAGGATCCAAGGATTGTTTCCGCGGA 179
Query 259 TGATTTCTTTTTCTC-GAGCCTCAACAGACCTGGAAATACAAATAACGCGGTTGGGTCCA 317
||||||||||||||| | | ||||||||| ||||||||||||||||||||||||||||||
Sbjct 180 TGATTTCTTTTTCTCTG-GACTCAACAGAGCTGGAAATACAAATAACGCGGTTGGGTCCA 238
Query 318 ACGTGACAACCGTCAATGTTAACAACCTTGGAGGACTAAACACTCTTGGTATCTCACTTG 377
|||||||||||||||||||||||||||| |||||| ||||||| ||||| |||||||| |
Sbjct 239 ACGTGACAACCGTCAATGTTAACAACCTCGGAGGATTAAACACCCTTGGAATCTCACTAG 298
Query 378 TTCGTATAGACTATGCACCCAACGGTCAGAACCCACCTCACACCCACCCACGTGCCACCG 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TTCGTATAGACTATGCACCCAACGGTCAGAACCCACCTCACACCCACCCACGTGCCACCG 358
Query 438 AGATCTTGGTTGTTCAACAAGGAACTCTACTTGTAGGGTTTATCTCATCAAACCAAGACG 497
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 359 AGATCTTGGTTGTCCAACAAGGAACTCTACTCGTAGGGTTTATCTCATCAAACCAAGACG 418
Query 498 GAAACCGTCTTTTCGCCAAAACACTCAACGTGGGTGACGTATTTGTGTTTCCAGAAGGAC 557
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 419 GAAACCGTCTTTTCGCCAAAACGCTCAACGTGGGTGATGTATTTGTGTTTCCAGAAGGAC 478
Query 558 TCATCCATTTCCAGTTCAACCTAGGAGGAACTCCAGCAGTTGCAATCGCTGCTTTGAGCA 617
|||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||
Sbjct 479 TCATCCATTTCCAGTTCAACCTAGGAGGAATTCCAGCGGTAGCAATCGCTGCTTTGAGCA 538
Query 618 GCCAAAACGCAGGTGTTATCACAATTGCTAACACAATATTTGGGTCTAAACCAGATGTAG 677
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 539 GCCAAAACGCAGGTGTTATCACGATTGCTAACACAATATTTGGGTCTAAACCAGATATAG 598
Query 678 ACCCGAATGTTCTTGCAAGAGCATTCCAAATGGATGTTAATGCGGTCAGGAATTTACAAG 737
||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 599 ACCCGAATGTTCTTGCAAGGGCATTCCAAATGGATCCTAATGCGGTCAGGAATTTACAAG 658
Query 738 CCAGGTTCTAA 748
|||||||||||
Sbjct 659 CCAGGTTCTAA 669
> Ahg891850 jgi|Araly1|891850|Al_scaffold_0007_3836
Length=672
Score = 433 bits (234), Expect = 1e-120
Identities = 515/645 (80%), Gaps = 41/645 (6%)
Strand=Plus/Plus
Query 80 ATGACGATAAAAAGTCTCTCTTTTCTTGCGGCTCTATCTCTCTTTGCTTTGACACTTCCA 139
||| |||| || |||||| | ||||| | | |||||||||| | ||| | |||||||||
Sbjct 1 ATGGCGATGAAGAGTCTCCCATTTCTAGTAGTTCTATCTCTCCTGGCTATAACACTTCCA 60
Query 140 TTAGTAATTGCTTCCGATCCAAGCCCCCTTCAAGACTTTTGTGTTGGTGTCAACACAC-C 198
|||| |||||||| ||||||||||| ||||||||||||||||| | | |||||| | |
Sbjct 61 TTAGCCATTGCTTCTGATCCAAGCCCTCTTCAAGACTTTTGTGTCAGCGCCAACAC-CTC 119
Query 199 AGCAGATGGCGTGTTTGTGAATGGAAAGTTTTGCAAGGATCC-AAGGA-TAGTTTTC-GC 255
||||||||| || ||||| ||||||||||| |||||||| || || | | | | | ||
Sbjct 120 AGCAGATGGAGTTTTTGTTAATGGAAAGTTCTGCAAGGACCCGAA--ACTCG-TCACAGC 176
Query 256 GGATGATTTCTTTTTCTC-GAGCCTC--AA--C-AGACCTGGAAATACAAATAACGCGGT 309
||||| ||||||||||| | || || || | ||||| || | || | | | | ||
Sbjct 177 AGATGACTTCTTTTTCTCAGGGCTTCAAAATGCAAGACC-GG-TA-ACTAGT--C-CAGT 230
Query 310 TGGGTCCAACGTGACAACCGTCAATGTTAACAACCTTGGAGGACTAAACACTCTTGGTAT 369
|||||| | ||||||| |||||||||||||||||||| ||| ||||||||||||| ||
Sbjct 231 TGGGTCGACCGTGACAGCCGTCAATGTTAACAACCTTCTAGGGTTAAACACTCTTGGAAT 290
Query 370 CTCACTTGTTCGTATAGACTATGCACCCAACGGTCAGAACCCACCTCACACCCACCCACG 429
||| ||||| ||||| || ||||| ||||| ||||||||||||||||||||||||||
Sbjct 291 CTCCCTTGTCCGTATTGATTATGCGGTTAACGGACAGAACCCACCTCACACCCACCCACG 350
Query 430 TGCCACCGAGATCTTGGTTGTTC-AACAAGGAACTCTACTTGTAGGGTTTATCTCATCAA 488
|||||| |||||||||||||| | |||||||||| || || ||||||||| || ||||||
Sbjct 351 TGCCACGGAGATCTTGGTTGT-CGAACAAGGAACACTTCTCGTAGGGTTTGTCACATCAA 409
Query 489 ACCAAGACGGA-AACCGTCTTTTCGCCAAAACACTCAACGTGGGTGACGTATTTGTGTTT 547
||| |||| || || || ||| | ||| || |||| |||||| ||||||||||||
Sbjct 410 ACC----CGGATAATCGCCTCTTCACTAAAGTTCTTAACGAGGGTGATGTATTTGTGTTT 465
Query 548 CCAGAAGGACTCATCCATTTCCA-GTTCAACC-TAGG-A-GGAACTCCAGCAGTTGCAAT 603
||||| ||||||||||||||||| | ||| | | || | ||||| | ||| |||||| |
Sbjct 466 CCAGAGGGACTCATCCATTTCCAAG--CAAACATTGGCAAGGAAC-C-AGCGGTTGCATT 521
Query 604 CGCTGCTTTGAGCAGCCAAAACGCAGGTGTTATCACAATTGCTAACACAATATTTGGGTC 663
||| ||| | |||||||||||| | ||||| ||||| |||||||||||| | ||||||||
Sbjct 522 CGCCGCTCTAAGCAGCCAAAACCCTGGTGTCATCACTATTGCTAACACAGTGTTTGGGTC 581
Query 664 TAAACCAG--ATGTAGACCCGAA-TGTTCTTGCAAGAGCATTCCA 705
||| |||| || || |||| || | |||||||||| || |||||
Sbjct 582 TAACCCAGCGAT-TA-ACCC-AAGTATTCTTGCAAGGGCGTTCCA 623
> Ahg891847 jgi|Araly1|891847|Al_scaffold_0007_3833
Length=672
Score = 405 bits (219), Expect = 3e-112
Identities = 503/634 (79%), Gaps = 43/634 (7%)
Strand=Plus/Plus
Query 92 AGTCTCTCTTTTCTTGC-G-GCTCTATCTCTCTTTGCTTTGACACTTCCATTAG-TAATT 148
|||||||| |||||||| | |||| |||||||| ||||||||||||||||||| | |||
Sbjct 13 AGTCTCTCATTTCTTGCAGTGCTC--TCTCTCTTGGCTTTGACACTTCCATTAGCT-ATT 69
Query 149 GCTTCCGATCCAAGCCCCCTTCAAGACTTTTGTGTTGGTGTCAACACAC-CAGCAGATGG 207
|| || |||||||||| ||||||||||||||||| | | |||||| | ||||| ||||
Sbjct 70 GCATCTGATCCAAGCCAACTTCAAGACTTTTGTGTCAGCGCCAACAC-CTCAGCAAATGG 128
Query 208 CGTGTTTGTGAATGGAAAGTTTTGCAAGGATCC-AAGGA-TAGTTTTC-GCGGATGATTT 264
|| ||||| ||||||||||| |||||||| || || | | | | | || ||||| ||
Sbjct 129 TGTTTTTGTTAATGGAAAGTTCTGCAAGGACCCGAA--ACTCG-TCACAGCAGATGACTT 185
Query 265 CTTTTTCTC-GAGCCTCAACAGACCTGGAAATACAAATAAC--G--CGGTTGGGTCCAAC 319
||||||||| | || |||| | | | | || || |||| | | |||||||| | |
Sbjct 186 CTTTTTCTCAGGGCTTCAA-A-A--T-GCAAGACCCGTAACTAGTCCAGTTGGGTCGACC 240
Query 320 GTGACAACCGTCAATGTTAACAACCTTGGAGGACTAAACACTCTTGGTATCTCACTTGTT 379
|||||| |||||||||||||||||||| || |||| |||||||| ||||| |||||
Sbjct 241 GTGACAGCCGTCAATGTTAACAACCTTCTCGGGTTAAATACTCTTGGAATCTCCCTTGTC 300
Query 380 CGTATAGACTATGCACCCAACGGTCAGAACCCACCTCACACCCACCCACGTGCCACCGAG 439
||||| || ||||| ||||| |||||||||||||||||||||||||||||||| |||
Sbjct 301 CGTATTGATTATGCGGTTAACGGACAGAACCCACCTCACACCCACCCACGTGCCACGGAG 360
Query 440 ATCTTGGTTGTTC-AACAAGGAACTCTACTTGTAGGGTTTATCTCATCAAACCAAGACGG 498
||||||||||| | |||||||||| || || ||||||||| || ||||||||| |||
Sbjct 361 ATCTTGGTTGT-CGAACAAGGAACACTTCTCGTAGGGTTTGTCACATCAAACC----CGG 415
Query 499 A-AACCGTCTTTTCGCCAAAACACTCAACGTGGGTGACGTATTTGTGTTTCCAGAAGGAC 557
| || || |||||| | ||| ||||||| |||||| ||||||||||||||||| ||||
Sbjct 416 ATAATCGCCTTTTCACTAAAGTTCTCAACGAGGGTGATGTATTTGTGTTTCCAGAGGGAC 475
Query 558 TCATCCATTTCCA-GTTCAACC-TAGG-A-GGAACTCCAGCAGTTGCAATCGCTGCTTTG 613
||||||||||||| | ||| | | || | || || | ||| |||||| |||| ||| |
Sbjct 476 TCATCCATTTCCAAG--CAAACATTGGCAAGGGAC-C-AGCGGTTGCATTCGCCGCTCTA 531
Query 614 AGCAGCCAAAACGCAGGTGTTATCACAATTGCTAACACAATATTTGGGTCTAAACCAGAT 673
|||||||||||| | ||||| ||||| ||||| ||||| | |||||| |||| ||||
Sbjct 532 AGCAGCCAAAACCCTGGTGTCATCACTATTGCCAACACCGTGTTTGGGGCTAACCCAGCC 591
Query 674 GTAGACCCGAA-TGTTCTTGCAAGAG-CATTCCA 705
|| |||| || | ||||||||| || | |||||
Sbjct 592 ATAAACCC-AACTATTCTTGCAA-AGGCGTTCCA 623
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32633216952
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5