BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14640.1
Length=624
Score E
Sequences producing significant alignments: (Bits) Value
Ahg330049 jgi|Araly1|330049|fgenesh1_pm.C_scaffold_7002276 785 0.0
Ahg479802 jgi|Araly1|479802|fgenesh2_kg.3__2503__AT3G22930.1 494 4e-139
> Ahg330049 jgi|Araly1|330049|fgenesh1_pm.C_scaffold_7002276
Length=465
Score = 785 bits (425), Expect = 0.0
Identities = 443/452 (98%), Gaps = 0/452 (0%)
Strand=Plus/Plus
Query 93 AAGAAACAGCACTGACAAAAGATCAGATCACTGAGTTCAAAGAAGCCTTTTGTCTCTTCG 152
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 14 AAGAGACAGCACTGACAAAAGATCAGATCACTGAGTTCAAAGAAGCCTTTTGTCTCTTCG 73
Query 153 ACAAAGACGGCGACGGTTGTATAACGGTGGAAGAACTTGCAACAGTGATCCGTTCGTTGG 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 74 ACAAAGACGGCGACGGTTGTATAACGGTGGAAGAACTTGCAACAGTGATCCGTTCGTTGG 133
Query 213 ATCAGAATCCGACAGAACAAGAACTTCATGATATCATCACTGAGATTGATTCTGATAGCA 272
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 134 ATCAGAATCCGACAGAACAAGAACTTCAAGATATCATCACTGAGATCGATTCTGATAGCA 193
Query 273 ACGGCACCATTGAATTTGCTGAGTTTCTCAACCTCATGGCCAAAAAACTTCAGGAAAGTG 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 194 ACGGCACCATTGAATTTGCTGAGTTTCTCAACCTCATGGCCAAAAAACTTCAGGAAAGTG 253
Query 333 ATGCGGAGGAAGAGCTGAAAGAAGCATTCAAAGTCTTTGACAAAGACCAAAATGGATACA 392
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 254 ATGCTGAGGAAGAGCTGAAAGAAGCATTCAAAGTCTTTGACAAAGACCAAAATGGTTATA 313
Query 393 TCTCTGCCAGTGAGTTGAGTCATGTAATGATAAATCTAGGAGAAAAGCTAACAGATGAAG 452
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 314 TCTCTGCCAGTGAGTTAAGTCATGTAATGATAAATCTAGGGGAAAAGCTAACAGATGAAG 373
Query 453 AAGTTGAACAAATGATAAAGGAGGCAGATTTGGATGGTGATGGCCAAGTCAATTATGATG 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 374 AAGTTGAACAAATGATAAAGGAGGCAGATTTGGATGGTGATGGCCAAGTCAATTATGATG 433
Query 513 AATTTGTCAAGATGATGATCAACATTGACTGA 544
||||||||||||||||||||||||||| ||||
Sbjct 434 AATTTGTCAAGATGATGATCAACATTGGCTGA 465
> Ahg479802 jgi|Araly1|479802|fgenesh2_kg.3__2503__AT3G22930.1
Length=764
Score = 494 bits (267), Expect = 4e-139
Identities = 385/441 (87%), Gaps = 11/441 (2%)
Strand=Plus/Plus
Query 97 AAC-AGCACTGACAAAAGATCAGATCACT-GAGTTCAAAGAAGCCTTTTGTCTCTTCGAC 154
||| || |||||| |||| ||||| | | ||||| ||||| ||||||||||||||||||
Sbjct 131 AACAAGAACTGACGCAAGAACAGAT-AATGGAGTTTAAAGAGGCCTTTTGTCTCTTCGAC 189
Query 155 AAAGACGGCGACGGTTGTATAAC-GGTGGAAGAACTTGCAACAGTGATCCGTTCGTTGGA 213
||||| || || ||||| || || | | || |||||||| || |||||||| || |||||
Sbjct 190 AAAGATGGTGATGGTTGCATCACTGCT-GATGAACTTGCCACTGTGATCCGCTCATTGGA 248
Query 214 TCAGAATCCGACAGAACAAGAACTTC-ATGATATCATCACTGAGATTGATTCTGATAGCA 272
|||||| ||||| ||||||||||||| | ||||| ||||||||||| || |||||| |||
Sbjct 249 TCAGAACCCGACCGAACAAGAACTTCGA-GATATGATCACTGAGATCGACTCTGATGGCA 307
Query 273 ACGGCACCATTGAATT-TGCTGAGTTTCTCAACCTCATGGCCAA-AAAACTTCAGGAAAG 330
|||||||||| ||||| | | |||||||||||||||||||| || ||| | |||||||
Sbjct 308 ACGGCACCATCGAATTCT-CGGAGTTTCTCAACCTCATGGCTAACCAAA-TCCAGGAAAC 365
Query 331 TGATGCGGAGGAAGAGCTGAAAGAAGCATTCAAAGTCTTTGACAAAGACCAAAATGGATA 390
|||||| || |||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 366 TGATGCAGATGAAGAGCTGAAAGAAGCATTCAAAGTGTTTGACAAAGACCAAAATGGTTA 425
Query 391 CATCTCTGCCAGTGAGTTGAGTCATGTAATGATAAATCTAGGAGAAAAGCTAACAGATGA 450
||| ||||||||||||||||| ||||| ||||| ||||| || || ||||| ||||||||
Sbjct 426 CATATCTGCCAGTGAGTTGAGGCATGTGATGATCAATCTTGGGGAGAAGCTTACAGATGA 485
Query 451 AGAAGTTGAACAAATGATAAAGGAGGCAGATTTGGATGGTGATGGCCAAGTCAATTATGA 510
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 486 AGAGGTTGATCAAATGATAAAGGAGGCAGATTTGGATGGTGATGGCCAAGTCAATTATGA 545
Query 511 TGAATTTGTCAAGATGATGAT 531
||||||||||| |||||||||
Sbjct 546 TGAATTTGTCAGGATGATGAT 566
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22835627283
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5