BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14660.1
Length=845
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946908 jgi|Araly1|946908|scaffold_703137.1 953 0.0
> Ahg946908 jgi|Araly1|946908|scaffold_703137.1
Length=582
Score = 953 bits (516), Expect = 0.0
Identities = 542/555 (98%), Gaps = 0/555 (0%)
Strand=Plus/Plus
Query 133 AAGGTTGAACAATGTTTCTCAAAGTCCAATTACCATGGAACGTGATGATTCCAGCTGAAA 192
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 15 AAGGTTGAACAATGTTTCTCAAAGTCCAGTTACCATGGAACGTGATGATTCCAGCTGAAA 74
Query 193 ACATGGATGCCAAAGGGCTGATGTTGAAGAGAGCTATACTAGTAGAGTTACTAGAGGCGT 252
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 75 ACATGGATGCCAAAGGGCTGATTTTGAAGAGAGCTATACTAGTAGAGTTACTAGACGCGT 134
Query 253 TTGCTTCCAAGAAAGCAACCAAGGAGCTTGGCTACTACGTGGCAGTCACAACTTTGGACA 312
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 135 TTGCTTCCAAGAAAGCAACCAAGGAGCTTGGCTACTATGTGGCAGTCACAACTTTGGACA 194
Query 313 AGATTGGAGAAGGCAAAATCAGGGAGCACACCGGTGAAGTTTTGTTCCCGGTAATGTTCA 372
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 195 AGATCGGAGAAGGCAAAATCAGGGAGCATACCGGTGAAGTTTTGTTCCCGGTAATGTTCA 254
Query 373 GCGGAATGACTTTCAAGATCTTCAAAGGAGAGATAATTCACGGTGTGGTGCACAAGGTGT 432
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 255 GTGGAATGACTTTCAAGATCTTCAAAGGAGAGATAATTCACGGTGTGGTGCACAAGGTGT 314
Query 433 TGAAGCACGGTGTCTTCATGAGGTGTGGTCCAATCGAGAATGTTTACCTCTCCTACACGA 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 315 TGAAGCACGGTGTCTTCATGAGGTGTGGTCCAATCGAGAATGTTTACCTCTCCTACACGA 374
Query 493 AGATGCCGGATTACAAGTATATCCCTGGAGAGAACCCGATCTTCATGAATGAGAAGACGT 552
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 375 AGATGCCGGATTACAAGTATGTCCCTGGAGAGAACCCGATCTTCATGAATGAGAAGACGT 434
Query 553 CTAGGATTCAGGTTGAGACTACAGTGAGGGTTGTTGTGATTGGGATAAAGTGGATGGAAG 612
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 435 CTAGGATTCAGGTTGAGACTACAGTGAGGGTTGGGGTGATTGGGATAAAGTGGATGGAGG 494
Query 613 TAGAGAGGGAGTTTCAGGCGTTGGCTAGCTTGGAAGGTGACTATCTTGGACCATTATCTG 672
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 495 CAGAGAGGGAGTTTCAGGCGTTGGCTAGCTTGGAAGGTGACTACCTTGGACCATTATCTG 554
Query 673 AAGAGTGATCTGCTT 687
|||||||||||||||
Sbjct 555 AAGAGTGATCTGCTT 569
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31260791940
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5