BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14670.1
Length=1872
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493439 jgi|Araly1|493439|fgenesh2_kg.7__2872__AT4G14670.1 2316 0.0
Ahg946898 jgi|Araly1|946898|scaffold_703127.1 2307 0.0
Ahg920799 jgi|Araly1|920799|scaffold_102080.1 870 0.0
Ahg952099 jgi|Araly1|952099|scaffold_37500002.1 355 6e-97
> Ahg493439 jgi|Araly1|493439|fgenesh2_kg.7__2872__AT4G14670.1
Length=1619
Score = 2316 bits (1254), Expect = 0.0
Identities = 1503/1623 (93%), Gaps = 18/1623 (1%)
Strand=Plus/Plus
Query 237 CGGGGATACCAAAGTGGGAGTAGCGGTATTGGTAATTAGTCTTCTTGAAGATTCTCAAAT 296
|||||| |||| |||||||||| || |||||| |||||||||||||| |||||||||||
Sbjct 6 CGGGGAGACCAGTGTGGGAGTAGAGGCATTGGTGATTAGTCTTCTTGATGATTCTCAAAT 65
Query 297 CAGTGATGTGTTGAAAGAAGCTGGTGT-TGTGCCTGAGAAGGTTAAGTCTGAGGTGGAGA 355
||| ||| ||||||||||||||||| | ||| || |||||||||||||||||||||||||
Sbjct 66 CAGGGATTTGTTGAAAGAAGCTGGT-TCTGTACCAGAGAAGGTTAAGTCTGAGGTGGAGA 124
Query 356 AGCTTCGTGGGGAGGTAATCCTTCGGGCTTTGAAGACTTATGGGACAGATTTGGTTGAGC 415
||||| |||| ||||||| ||||| |||||||||||||||||||| ||||||||||||||
Sbjct 125 AGCTTGGTGGCGAGGTAAACCTTCAGGCTTTGAAGACTTATGGGATAGATTTGGTTGAGC 184
Query 416 AAGCAGGTAAGCTTGATCCTGTCATTGGCCGACACAGGGAGATTAGAAGAGTAATTGAGG 475
||| |||||||||||||||||||||||||||| ||| ||||||||||||||| ||| ||
Sbjct 185 AAGTAGGTAAGCTTGATCCTGTCATTGGCCGAGACAAGGAGATTAGAAGAGTTGTTG-GG 243
Query 476 -TTCTCTCAAGGAGAACCAAGAACAACCCCGTGCTCATCGGTGAGCCAGGTGTTGGAAAA 534
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 244 ATTCTCTCAAGGAGAACCAAGAACAACCCCGTGCTTATTGGTGAGCCAGGTGTTGGAAAA 303
Query 535 ACTGCTGTGGTTGAAGGTTTGGCTCAAAGGATACTGAAAGGAGACGTGCCTATCAATCTT 594
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 304 ACTGCTGTGGTTGAAGGTTTGGCTCAAAGGATATTGAAAGGAGACGTGCCTATCAATCTT 363
Query 595 ACTGGTGTAAAACT-TATTTCCTTGGAATTTGGTGCAATGGTTGCTGGAACAACACTCCG 653
|| | |||||| || | |||||||||| || |||||||||||||| ||||||||||| ||
Sbjct 364 ACCGATGTAAAGCTCT-TTTCCTTGGACTTGGGTGCAATGGTTGCCGGAACAACACTACG 422
Query 654 TGGACAATTCGAAGAAAGATTGAAGTCTGTCTTGAAAGCAGTTGAGGAA-GCTCAAGGCA 712
||||||||||||||||||||||||||| |||||||||| |||||| ||| ||||||||||
Sbjct 423 TGGACAATTCGAAGAAAGATTGAAGTCGGTCTTGAAAGAAGTTGA-GAATGCTCAAGGCA 481
Query 713 AAGTTGTTCTGTTTATCGATGAGATCCACATGGCTCTTGGTGCTTGCAAA-GCAAGTGGG 771
|||||||||| |||||||||||||||||||||||||||||||| || ||| ||||||||
Sbjct 482 AAGTTGTTCTCTTTATCGATGAGATCCACATGGCTCTTGGTGC-TGGAAAGGCAAGTGGC 540
Query 772 TCAACGGATGCTGCTAAGTTGCTTAAGCCTATGTTAGCAAGAGGTCAGCTTCGTTTCATT 831
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 541 TCCACGGATGCTGCTAATTTGCTTAAGCCTATGTTAGCAAGAGGTCAGCTTCGTTGCATT 600
Query 832 GGAGCTACTACGCTTGAGGAATACCGAACACATGTTGAGAAAGATGCTGCTTTTGAGAGA 891
|| |||||||||||||||||||||||||||||| | |||||||||||||| || ||||||
Sbjct 601 GGTGCTACTACGCTTGAGGAATACCGAACACATATCGAGAAAGATGCTGCATTCGAGAGA 660
Query 892 AGGTTCCAGCAAGTGTTTGTAGCTGAGCCTAGTGTGCCTGATACTATCAGTATTCTTCGA 951
|||||||| ||||||| |||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 661 AGGTTCCAACAAGTGTATGTAGCTGAGCCTAGTGTCCCTGACACTATCAGTATTCTTCGA 720
Query 952 GGGCTTAAAGAAAAATATGAAGGACATCATGGTGTTCGTATCCAAGATAGAGCTCTAGTT 1011
|||||||||||||||||||||||||| |||||||||||||||||||| || ||||| |||
Sbjct 721 GGGCTTAAAGAAAAATATGAAGGACACCATGGTGTTCGTATCCAAGACAGTGCTCTTGTT 780
Query 1012 CTTTCTGCTCAATTGTCTGAACGTTACATCACTGGTCGACGTTTACCGGATAAGGCAATT 1071
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 781 GTTTCTGCTCAATTGTCTGCGCGTTACATCACTGCTCGACGTTTACCGGATAAGGCAATT 840
Query 1072 GATTTAGTTGATGAGTCTTGTGCACATGTCAAAGCCCAGCTTGATATTCAACCAGAAGAA 1131
||||| ||||||||||||||||||||||| | || ||||||||||| |||||||||||||
Sbjct 841 GATTTGGTTGATGAGTCTTGTGCACATGTGAGAGTCCAGCTTGATAGTCAACCAGAAGAA 900
Query 1132 ATTGA-TAGCCTTGAAAGAAAAGTAATGCAACTAGAGATAGAGATTCATGCTCTCGAAAA 1190
||||| || ||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 901 ATTGATTA-CCTTGAAAGAAAAACAATGCAACTAAAGATAGAGATTCATGCTCTCGAAAA 959
Query 1191 GGAGAAGGACGACAAAGCTAGCGAAGCTCGTCTTTCCGAGGTGAGGAAAGAGCTTGATGA 1250
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 960 GGAGAAGGACGACAAAGCTAGCGAAGCTCGTCTTTACGAGGTGAGGAAAGAGCTTGATGA 1019
Query 1251 CTTGAGGGACAAGCTTGAGCCTCTTACAATAAAATACAAAAAGGAGAAAAAGATCATTAA 1310
||||||||||||||||||||||||||||||||||||||| || ||||||| ||| |||||
Sbjct 1020 CTTGAGGGACAAGCTTGAGCCTCTTACAATAAAATACAAGAATGAGAAAAGGATAATTAA 1079
Query 1311 TGAAACTCGGAGGCTTAAACAGAATCGAGACGATCTCATGATTGCTCTACAAGAGGCTGA 1370
|||||||||||| ||||||||||| ||||| || ||||||||||||||||||||||||||
Sbjct 1080 TGAAACTCGGAGTCTTAAACAGAAACGAGATGAGCTCATGATTGCTCTACAAGAGGCTGA 1139
Query 1371 GAGACAACATGACGTTCCTAAAGCTGCTGTTCTAAAATATGGTGCAATTCAGGAAGTAGA 1430
||||||| ||||| ||||||||||||||| ||||| |||||| |||||||||||||||||
Sbjct 1140 GAGACAATATGACCTTCCTAAAGCTGCTGATCTAAGATATGGGGCAATTCAGGAAGTAGA 1199
Query 1431 ATCTGCGATAGCGAAACTAGAAAAGAGTGCTAAAGATAACGTGATGCTTACAGAAACTGT 1490
||| |||||||| ||| |||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 1200 ATCCGCGATAGCAAAATTAGAAAAGAGTGTTAAAGATAACGTGATGCTTACGGAAACTGT 1259
Query 1491 TGGGCCAGAGAATATTGCTGAGGTAGTGAGCCGATGGACTGGGATACCAGTGACTAG-AC 1549
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||
Sbjct 1260 TGGGCCAGAGAATATTGCTGAGGTAGTGAGCCGATGGACTGGGATTCCAGTGACT-GCAC 1318
Query 1550 TTGACCAGAACGAGAAGAAGAGGCTAATTTCTCTTGCTGATAAGTTGCACGAGAGAGTTG 1609
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 1319 TTGACCAGAACGAGAAGAAGAGGCTGATTTCTCTTGCTGATAGGTTGCACGAGAGAGTTG 1378
Query 1610 TTGGACAAGACGAAGCTGTGAAAGCTGTGGCTGCTGCAATACTAAGGTCGAGGGTTGGAC 1669
|||||||||||||||| ||||||||||| ||||| ||||| |||||||| ||||||||||
Sbjct 1379 TTGGACAAGACGAAGCCGTGAAAGCTGTAGCTGCGGCAATTCTAAGGTCAAGGGTTGGAC 1438
Query 1670 TAGGAAGGCCACAACAACCGTCTGGTTCCTTTCTCTTCCTCGGTCCAACTGGTGTTGGTA 1729
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1439 TAGGAAGGCCACAACAACCATCTGGTTCCTTTCTTTTCCTCGGTCCAACTGGTGTTGGTA 1498
Query 1730 AAACCGAGCTGGCTAAGGCTCTGGCTGAGCAACTCTTTGAC-AGTGAAAACCTACTCGTT 1788
|||| ||||||||||| ||||| ||||||||||||||| || | |||||||||||| |||
Sbjct 1499 AAACTGAGCTGGCTAAAGCTCTTGCTGAGCAACTCTTTTACGA-TGAAAACCTACTTGTT 1557
Query 1789 AGGCTTGATATGTCGGAGTATAATG-ACAAATTCTCTGTTAATAAACTTATAGGGGCACC 1847
|||||||||||||||||||||| || | | || | |||||||||||||||||||||||||
Sbjct 1558 AGGCTTGATATGTCGGAGTATA-TGGATAGATCCACTGTTAATAAACTTATAGGGGCACC 1616
Query 1848 ACC 1850
|||
Sbjct 1617 ACC 1619
> Ahg946898 jgi|Araly1|946898|scaffold_703127.1
Length=2806
Score = 2307 bits (1249), Expect = 0.0
Identities = 1528/1661 (92%), Gaps = 26/1661 (2%)
Strand=Plus/Plus
Query 222 CACTAAACGGAATCTCGGGGATACCAAAGTGGGAGTAGCGGTATTGGTAATTAGTCTTCT 281
||| |||| ||| | |||||| |||| |||||||||| || |||||| |||||||||||
Sbjct 440 CAC-AAAC-GAAGCCCGGGGAGACCAGTGTGGGAGTAGAGGCATTGGTGATTAGTCTTCT 497
Query 282 TGAAGATTCTCAAATCAGTGATGTGTTGAAAGAAGCTGGTGT-TGTGCCTGAGAAGGTTA 340
||| |||||||||||||| ||| ||||||||||||||||| | ||| || ||||||||||
Sbjct 498 TGATGATTCTCAAATCAGGGATTTGTTGAAAGAAGCTGGT-TCTGTACCAGAGAAGGTTA 556
Query 341 AGTCTGAGGTGGAGAAGCTTCGTGGGGAGGTAATCCTTCGGGCTTTGAAGACTTATGGGA 400
|||||||||||||||||||| |||| ||||||| ||||| ||||||||||||||||||||
Sbjct 557 AGTCTGAGGTGGAGAAGCTTGGTGGCGAGGTAAACCTTCAGGCTTTGAAGACTTATGGGA 616
Query 401 CAGATTTGGTTGAGCAAGCAGGTAAGCTTGATCCTGTCATTGGCCGACACAGGGAGATTA 460
||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||
Sbjct 617 TAGATTTGGTTGAGCAAGTAGGTAAGCTTGATCCTGTCATTGGCCGAGACAAGGAGATTA 676
Query 461 GAAGAGTAATTGAGG-TTCTCTCAAGGAGAACCAAGAACAACCCCGTGCTCATCGGTGAG 519
||||||| ||| || |||||||||||||||||||||||||||||||||| || ||||||
Sbjct 677 GAAGAGTTGTTG-GGATTCTCTCAAGGAGAACCAAGAACAACCCCGTGCTTATTGGTGAG 735
Query 520 CCAGGTGTTGGAAAAACTGCTGTGGTTGAAGGTTTGGCTCAAAGGATACTGAAAGGAGAC 579
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 736 CCAGGTGTTGGAAAAACTGCTGTGGTTGAAGGTTTGGCTCAAAGGATATTGAAAGGAGAC 795
Query 580 GTGCCTATCAATCTTACTGGTGTAAAACT-TATTTCCTTGGAATTTGGTGCAATGGTTGC 638
||||||||||||||||| | |||||| || | |||||||||| || ||||||||||||||
Sbjct 796 GTGCCTATCAATCTTACCGATGTAAAGCTCT-TTTCCTTGGACTTGGGTGCAATGGTTGC 854
Query 639 TGGAACAACACTCCGTGGACAATTCGAAGAAAGATTGAAGTCTGTCTTGAAAGCAGTTGA 698
||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 855 CGGAACAACACTACGTGGACAATTCGAAGAAAGATTGAAGTCGGTCTTGAAAGAAGTTGA 914
Query 699 GGAA-GCTCAAGGCAAAGTTGTTCTGTTTATCGATGAGATCCACATGGCTCTTGGTGCTT 757
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 915 -GAATGCTCAAGGCAAAGTTGTTCTCTTTATCGATGAGATCCACATGGCTCTTGGTGC-T 972
Query 758 GCAAA-GCAAGTGGGTCAACGGATGCTGCTAAGTTGCTTAAGCCTATGTTAGCAAGAGGT 816
| ||| |||||||| || |||||||||||||| |||||||||||||||||||||||||||
Sbjct 973 GGAAAGGCAAGTGGCTCCACGGATGCTGCTAATTTGCTTAAGCCTATGTTAGCAAGAGGT 1032
Query 817 CAGCTTCGTTTCATTGGAGCTACTACGCTTGAGGAATACCGAACACATGTTGAGAAAGAT 876
|||||||||| |||||| |||||||||||||||||||||||||||||| | |||||||||
Sbjct 1033 CAGCTTCGTTGCATTGGTGCTACTACGCTTGAGGAATACCGAACACATATCGAGAAAGAT 1092
Query 877 GCTGCTTTTGAGAGAAGGTTCCAGCAAGTGTTTGTAGCTGAGCCTAGTGTGCCTGATACT 936
||||| || |||||||||||||| ||||||| |||||||||||||||||| ||||| |||
Sbjct 1093 GCTGCATTCGAGAGAAGGTTCCAACAAGTGTATGTAGCTGAGCCTAGTGTCCCTGACACT 1152
Query 937 ATCAGTATTCTTCGAGGGCTTAAAGAAAAATATGAAGGACATCATGGTGTTCGTATCCAA 996
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1153 ATCAGTATTCTTCGAGGGCTTAAAGAAAAATATGAAGGACACCATGGTGTTCGTATCCAA 1212
Query 997 GATAGAGCTCTAGTTCTTTCTGCTCAATTGTCTGAACGTTACATCACTGGTCGACGTTTA 1056
|| || ||||| ||| |||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 1213 GACAGTGCTCTTGTTGTTTCTGCTCAATTGTCTGCGCGTTACATCACTGCTCGACGTTTA 1272
Query 1057 CCGGATAAGGCAATTGATTTAGTTGATGAGTCTTGTGCACATGTCAAAGCCCAGCTTGAT 1116
|||||||||||||||||||| ||||||||||||||||||||||| | || ||||||||||
Sbjct 1273 CCGGATAAGGCAATTGATTTGGTTGATGAGTCTTGTGCACATGTGAGAGTCCAGCTTGAT 1332
Query 1117 ATTCAACCAGAAGAAATTGA-TAGCCTTGAAAGAAAAGTAATGCAACTAGAGATAGAGAT 1175
| |||||||||||||||||| || ||||||||||||| |||||||||| ||||||||||
Sbjct 1333 AGTCAACCAGAAGAAATTGATTA-CCTTGAAAGAAAAACAATGCAACTAAAGATAGAGAT 1391
Query 1176 TCATGCTCTCGAAAAGGAGAAGGACGACAAAGCTAGCGAAGCTCGTCT-TTCCGAGGTGA 1234
||||||||||||||||||||||||||||||||||||||||||||| || | ||| ||||
Sbjct 1392 TCATGCTCTCGAAAAGGAGAAGGACGACAAAGCTAGCGAAGCTCGCCTAGT-CGAAGTGA 1450
Query 1235 GGAAAGAGCTTGATGACTTGAGGGACAAGCTTGAGCCTCTTACAATAAAATACAAAAAGG 1294
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1451 GGAAAGAGCTTGATGACTTGAGGGACAAGCTTGAGCCTCTTACAATAAAATACAAGAATG 1510
Query 1295 AGAAAAAGATCATTAATGAAACTCGGAGGCTTAAACAGAATCGAGACGATCTCATGATTG 1354
|||||| ||| ||||||||||||||||| ||||||||||| ||||| || ||||||||||
Sbjct 1511 AGAAAAGGATAATTAATGAAACTCGGAGTCTTAAACAGAAACGAGATGAGCTCATGATTG 1570
Query 1355 CTCTACAAGAGGCTGAGAGACAACATGACGTTCCTAAAGCTGCTGTTCTAAAATATGGTG 1414
||||||||||||||||||||||| ||||| ||||||||||||||| ||||| |||||| |
Sbjct 1571 CTCTACAAGAGGCTGAGAGACAATATGACCTTCCTAAAGCTGCTGATCTAAGATATGGGG 1630
Query 1415 CAATTCAGGAAGTAGAATCTGCGATAGCGAAACTAGAAAAGAGTGCTAAAGATAACGTGA 1474
||||||||||||||||||| |||||||| ||| |||||||||||| ||||||||||||||
Sbjct 1631 CAATTCAGGAAGTAGAATCCGCGATAGCAAAATTAGAAAAGAGTGTTAAAGATAACGTGA 1690
Query 1475 TGCTTACAGAAACTGTTGGGCCAGAGAATATTGCTGAGGTAGTGAGCCGATGGACTGGGA 1534
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1691 TGCTTACGGAAACTGTTGGGCCAGAGAATATTGCTGAGGTAGTGAGCCGATGGACTGGGA 1750
Query 1535 TACCAGTGACTAG-ACTTGACCAGAACGAGAAGAAGAGGCTAATTTCTCTTGCTGATAAG 1593
| ||||||||| | ||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 1751 TTCCAGTGACT-GCACTTGACCAGAACGAGAAGAAGAGGCTGATTTCTCTTGCTGATAGG 1809
Query 1594 TTGCACGAGAGAGTTGTTGGACAAGACGAAGCTGTGAAAGCTGTGGCTGCTGCAATACTA 1653
|||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||| |||
Sbjct 1810 TTGCACGAGAGAGTTGTTGGACAAGACGAAGCCGTGAAAGCTGTAGCTGCGGCAATTCTA 1869
Query 1654 AGGTCGAGGGTTGGACTAGGAAGGCCACAACAACCGTCTGGTTCCTTTCTCTTCCTCGGT 1713
||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1870 AGGTCAAGGGTTGGACTAGGAAGGCCACAACAACCATCTGGTTCCTTTCTTTTCCTCGGT 1929
Query 1714 CCAACTGGTGTTGGTAAAACCGAGCTGGCTAAGGCTCTGGCTGAGCAACTCTTTGAC-AG 1772
|||||||||||||||||||| ||||||||||| ||||| ||||||||||||||| || |
Sbjct 1930 CCAACTGGTGTTGGTAAAACTGAGCTGGCTAAAGCTCTTGCTGAGCAACTCTTTTACGA- 1988
Query 1773 TGAAAACCTACTCGTTAGGCTTGATATGTCGGAGTATAATG-ACAAATTCTCTGTTAATA 1831
|||||||||||| ||||||||||||||||||||||||| || | | || | |||||||||
Sbjct 1989 TGAAAACCTACTTGTTAGGCTTGATATGTCGGAGTATA-TGGATAGATCCACTGTTAATA 2047
Query 1832 AACTTATAGGGGCACCACCTGGATACGTACATTGGTCATGA 1872
||||||||||||||||||| || |||||||||||||||
Sbjct 2048 AACTTATAGGGGCACCACCCGG----GTACATTGGTCATGA 2084
Score = 213 bits (115), Expect = 4e-54
Identities = 197/235 (84%), Gaps = 12/235 (5%)
Strand=Plus/Plus
Query 1 ATGAATGAT-CTGAAATTTGACCCCAATGTCAAGCTTATACTTGCCTCGGCTCGATCACA 59
|||||| || | || |||||||||||| ||| ||||||||||||| ||||||| |||
Sbjct 22 ATGAATTATAC-GAGATTTGACCCCAAGGTCCAGCTTATACTTGCAAAGGCTCGAACACT 80
Query 60 TGCCAT-GTCATTGTCACATGGTCAAGTAACTCCTCTGCATCTCGGAGTTACTTTGATTT 118
|||||| || || |||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 81 TGCCATCGT-ATCGTCACATGTTCAAGTAACTCCTCTGCATCTCGGAGTTGGTTTGATTT 139
Query 119 CTGATCT-GACTAGTGTTTTCTATCGAGCAATCACCAGTGCAGGAG-ACGGCGATATCTC 176
|||| | |||| |||||||||||||||||||||||| |||||||| | | ||| | |||
Sbjct 140 CTGA-CAAGACTGGTGTTTTCTATCGAGCAATCACCACTGCAGGAGGAAG-CGA-A-CTC 195
Query 177 T-G-CTCAGTCAGTTGTCAACGTTATCAACCAATCCTTATACAAGCTCACTAAAC 229
| | ||||||||| |||||| || ||||| ||| ||||| | |||||| | ||||
Sbjct 196 TTGGCTCAGTCAGCTGTCAAAGTCATCAAACAAGCCTTAAAAAAGCTCCCAAAAC 250
> Ahg920799 jgi|Araly1|920799|scaffold_102080.1
Length=2132
Score = 870 bits (471), Expect = 0.0
Identities = 788/937 (84%), Gaps = 37/937 (4%)
Strand=Plus/Plus
Query 951 AGGGCTTAAAGAAAAATATGAAGGACATCATGGTGTTC-GTATCCAAGATAGAGCTCTAG 1009
|||||||||||| |||||||||| ||| ||||||| || |||||||||| | |||||| |
Sbjct 495 AGGGCTTAAAGAGAAATATGAAGTACACCATGGTG-TCTGTATCCAAGACACAGCTCTTG 553
Query 1010 TTCTTTCTGCTCAATTGTCTGAACGTTACATCACTGGTCGACGTTTACCGGATAAGGCAA 1069
|| |||||||||| ||||||| |||||||||||||||||| |||||||||||||| |
Sbjct 554 TTGTTTCTGCTCAGTTGTCTGCTCGTTACATCACTGGTCGAAAATTACCGGATAAGGCTA 613
Query 1070 TTGATTTAGTTGATGAGTCTTGTGCACATGTCAA-AGCCCAGCTTGATATTCAACCAGAA 1128
||||||| ||||||||| |||||||| |||| || || ||||||||||| |||||| |||
Sbjct 614 TTGATTTGGTTGATGAGGCTTGTGCATATGT-AAGAGTCCAGCTTGATAGTCAACCTGAA 672
Query 1129 GAAATTGATAG-CCTTGAAAGAAA-AGTAATGCAACTAGAGATAGAGA-TTCATGCTCTC 1185
||||||||| | | |||||||||| || |||||| ||| ||||||| | ||||||| |||
Sbjct 673 GAAATTGAT-GACTTTGAAAGAAAGAG-AATGCAGCTAAAGATAGA-ACTTCATGCCCTC 729
Query 1186 GAAAAGGAGAAGGACGACAAAGCTAGCGAAGCTCGTCTTTCCG-AGGTG-AGGAAAGAGC 1243
|||||||| || | |||||||| || | |||||||| || | ||||| | ||||||||
Sbjct 730 GAAAAGGATAA-G--GACAAAGCCAGTGTAGCTCGTC-TTGTGAAGGTGCA-GAAAGAGC 784
Query 1244 TTGATGACTTGAGGGACAAGCTTGAGCCTCTTACAATAAAATACAAAAAGGAGAAAAAGA 1303
||||||||||||||||||||||| ||||||||||| | | |||| |||| ||||| ||||
Sbjct 785 TTGATGACTTGAGGGACAAGCTTCAGCCTCTTACATTGAGATACCAAAATGAGAAGAAGA 844
Query 1304 TCATTAATGAAACTCGGAGGCTTAAACAGAATCGAGACGATCTCATGAT-TGCTCTACAA 1362
| ||| |||| | ||| | |||||||||||| || || || |||||| | ||||||| ||
Sbjct 845 TAATTGATGAGATTCGCAAGCTTAAACAGAAACGGGAAGAGCTCATG-TCTGCTCTA-AA 902
Query 1363 G-AGGCTGAGAGACAACATGACGTTCC-TAAAGCTGCTGTTCTAAAATATGGTGCAATTC 1420
| |||||||||| |||||| | | ||| || |||||||| ||||| |||||| | |||||
Sbjct 903 GGAGGCTGAGAGGCAACATAA-GCTCCCTAGAGCTGCTGATCTAAGATATGGGGAAATTC 961
Query 1421 AGGAAGTAGAATCTGCGA-TAGCGAAACTAGAAAAGAGTGCTAAAGATAACGTGATGCTT 1479
| |||| ||||||| || |||| ||||||||| ||||| ||||||| ||| | ||||||
Sbjct 962 AACAAGTGGAATCTG-GACTAGCAAAACTAGAAGAGAGTTCTAAAGAGAACCTAATGCTT 1020
Query 1480 ACAGAAA-CTGTTGGGCCAGAGAATATTGCTGAGGTAGTGAGCCGATGGACTGGGATACC 1538
|| |||| |||| ||||| || || ||||||||| ||||||||| |||||||||||| ||
Sbjct 1021 AC-GAAAACTGTCGGGCCGGATAACATTGCTGAGATAGTGAGCCAATGGACTGGGATTCC 1079
Query 1539 AGTGACTAGACTTGACCAGAACGAGAAGAAGAGGCTAATTTCTCTTGCTGATAAGTTGCA 1598
|||||||| ||||||||||||||| ||| ||| ||||| |||||||||||||| ||| ||
Sbjct 1080 AGTGACTAAACTTGACCAGAACGACAAGGAGAAGCTAAATTCTCTTGCTGATAGGTTACA 1139
Query 1599 CGAGAGAGTTGTTGGACAAGACGAAGCTGTGAAAGCTGTGGCTGCTGCAATACTAAGGTC 1658
| |||| ||||||||||||||| |||| ||| | |||||||||| |||||| |||||||
Sbjct 1140 CCAGAGGGTTGTTGGACAAGACCAAGCGGTGGACGCTGTGGCTGATGCAATTTTAAGGTC 1199
Query 1659 GAGGGTTGGACTAGGAAGGCCACAACAACCGTCTGGTTCCTTTCTCTTCCTCGGTCCAAC 1718
||||| ||| || ||||| ||||||||||| |||||||||| |||||||||||||||||
Sbjct 1200 GAGGGCTGGTCTTGGAAGTCCACAACAACCCACTGGTTCCTTCCTCTTCCTCGGTCCAAC 1259
Query 1719 TGGTGTTGGTAAAACCGAGCTGGCTAAGGCTCTGGCTGAGCAACTCTTTGAC-AGTGAAA 1777
||||||||| ||||| ||||| ||||||||||| |||||||||||||||||| | |||||
Sbjct 1260 TGGTGTTGGCAAAACTGAGCTAGCTAAGGCTCTCGCTGAGCAACTCTTTGACGA-TGAAA 1318
Query 1778 ACCTACTCGTTAGGCTTGATATGTCGGAGTATAATG-ACAAATTCTCTG-TTAATAAACT 1835
|||| | ||||||||||||||||| ||||||| || | |||| ||| | ||| | |||
Sbjct 1319 ACCTTTTGGTTAGGCTTGATATGTCAGAGTATA-TGGAAAAATACTC-GATTACTCGACT 1376
Query 1836 TATAGGGGCACCACCTGGATACGTACATTGGTCATGA 1872
|| || ||| ||||||| |||||||||| ||||
Sbjct 1377 CATTGGAGCATCACCTGG----GTACATTGGTTATGA 1409
> Ahg952099 jgi|Araly1|952099|scaffold_37500002.1
Length=1228
Score = 355 bits (192), Expect = 6e-97
Identities = 243/267 (91%), Gaps = 6/267 (2%)
Strand=Plus/Plus
Query 1607 TTGTTGGACAAGACGAAGCTGTGAAAGCTGTGGCTGCTGCAATACTAAGGTCGAGGGTTG 1666
|||||| |||||||||||| ||||||||||| ||||| ||||| |||||||| |||||||
Sbjct 248 TTGTTGTACAAGACGAAGCCGTGAAAGCTGTAGCTGCGGCAATTCTAAGGTCAAGGGTTG 307
Query 1667 GACTAGGAAGGCCACAACAACCGTCTGGTTCCTTTCTCTTCCTCGGTCCAACTGGTGTTG 1726
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 308 GACTAGGAAGGCCACAACAACCATCTGGTTCCTTTCTTTTCCTCGGTCCAACTGGTGTTG 367
Query 1727 GTAAAACCGAGCTGGCTAAGGCTCTGGCTGAGCAACTCTTTGACAG-TGAAAACCTACTC 1785
||||||| ||||||||||||||||| ||||||||||||||| || | |||||||||||||
Sbjct 368 GTAAAACTGAGCTGGCTAAGGCTCTTGCTGAGCAACTCTTTTAC-GATGAAAACCTACTC 426
Query 1786 GTTAGGCTTGATATGTCGGAGTATAATGACAAATTCTCTGTTAATAAACTTATAGGGGCA 1845
||||||||||||||||||||||||| ||| | || | |||||| ||||||||||||||||
Sbjct 427 GTTAGGCTTGATATGTCGGAGTATATTGATAGATACACTGTTAGTAAACTTATAGGGGCA 486
Query 1846 CCACCTGGATACGTACATTGGTCATGA 1872
||| |||| |||||||||||||||
Sbjct 487 CCAGCTGG----GTACATTGGTCATGA 509
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70314592270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5