BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14700.1
Length=2530
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490065 jgi|Araly1|490065|fgenesh2_kg.6__3199__AT4G12620.1 3107 0.0
Ahg493435 jgi|Araly1|493435|fgenesh2_kg.7__2868__AT4G14700.1 1437 0.0
> Ahg490065 jgi|Araly1|490065|fgenesh2_kg.6__3199__AT4G12620.1
Length=2458
Score = 3107 bits (1682), Expect = 0.0
Identities = 2227/2477 (90%), Gaps = 89/2477 (4%)
Strand=Plus/Plus
Query 24 TCCAAG-GCAAAAACCTTCAAATCCCCAACCAAAACTCCAACTAAAATGTATCGCAAATC 82
|||||| ||||||||||||||||||||||||||||| || ||||| || |||||||||||
Sbjct 12 TCCAAGAGCAAAAACCTTCAAATCCCCAACCAAAACACCGACTAACATCTATCGCAAATC 71
Query 83 GTATCTATCTCCATCTTCAACTTCACTCACTCCTCCTCAAACCCCAGAAACTCTCACTCC 142
||||||||| ||||||||||| ||||||| |||||||||||||||||||||| |||||
Sbjct 72 GTATCTATCACCATCTTCAACCTCACTCA---CTCCTCAAACCCCAGAAACTCTAACTCC 128
Query 143 TCTTCGTAGATCTTCTCGTCACGTTTCCCGTAAAATCAATCTGGGAAATGACCCAATCGA 202
|||||||||||| ||||||| ||||| || |||||| ||||||||||||||||||||||
Sbjct 129 TCTTCGTAGATCCGCTCGTCATGTTTCTCGAAAAATCGATCTGGGAAATGACCCAATCGA 188
Query 203 TCTTCCAGGAAAAGAATCAGTCGAAGAAATCAATCTAATT------CGA-AA--A---CC 250
| ||||||||| ||||||| |||||||||| ||||||||| ||| || | ||
Sbjct 189 TGTTCCAGGAAGAGAATCAATCGAAGAAATGAATCTAATTCGAAAACGAGAACGAGCGCC 248
Query 251 TAGAAAACGAACCAATGATATTGTT--------GTTG-C---A-GAG-AAGT-C---GAA 292
||||||| ||||| |||| ||||| || | | | || || | | |||
Sbjct 249 GAGAAAACCAACCACTGATGTTGTTCCAGAGAAGTCGACGAAATCAGAAACTCCGAAGAA 308
Query 293 GAAGAAGAAGATAGATCCGGAAGTTTCCTTCTCTCCTGTTTCACCAATTCGATCTGagac 352
|||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 309 GAAGAAGAAGATCGATTCGGAAGTTTCCTTCTCTCCTGTTTCTCCAATTCGATCTGAGAC 368
Query 353 gaagaagacgaagaagaagaagagaGTTTATTACAACAAAGTCGAATTCGACGAAACCGA 412
|| |||| || || |||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 369 GATTAAGAAGACGATTAAGAAGAGAGTTTATTACAATAAAGTCGAATTCGATGAAACCGA 428
Query 413 ATTCGAAATCGGTGATGATGTTTA-CGTTAAaagaacagaagacgcgaatccagatgaag 471
|||||||||||||||||||||||| | |||| |||| ||||||||||||| |||||
Sbjct 429 ATTCGAAATCGGTGATGATGTTTATC-TTAAGAGAAGAGAAGACGCGAATTCAGAT---- 483
Query 472 aagaagaagaagatccagaaatcgaagaTTGTCAGATCTGCTTCAAATCACATACTAACA 531
|||||||||||||||||||| |||||||||||||| || |||||||| ||||| | |
Sbjct 484 --GAAGAAGAAGATCCAGAAATTGAAGATTGTCAGATTTGTTTCAAATCGGATACT-A-A 539
Query 532 CAATAATGATTGAATGTGATGATTGTTTAGGTGGATTTCATTTGAATTGCTTGAAACCGC 591
| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 540 C-ATAATGATTGAGTGTGATGATTGTTTAGGTGGATTTCATTTGAAATGCTTGAAACCGC 598
Query 592 CATTGAAGGAAGTTCCTGAAGGTGATTGGATCTGTCAATTCTGTGAGGTTAAAAAGTCAG 651
| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 599 CGTTGAAGGAAGTTCCAGAAGGTGATTGGATCTGTCAATTTTGTGAGGTTAAAAAGTCAG 658
Query 652 GTC--A-AACACTTGTGGTTGTTCCTAAGCCACCGGAAGGGAAGAAATTAGCGAGAACGA 708
||| | ||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 659 GTCAAACAACACTTGT-G--GTTCCTAAGCCACCGGAAGGGAAGAAATTAGCGAGAACGA 715
Query 709 TGAAGGAGAAGCTTCTCTCTAGTGATTTATGGGCTGCTCGAATTGAGAAGTTGTGGAAAG 768
||| |||||||||||| || ||||||||||||| |||||||| ||||||||||||||||
Sbjct 716 TGAGGGAGAAGCTTCTTTCCGGTGATTTATGGGCGGCTCGAATCGAGAAGTTGTGGAAAG 775
Query 769 AAGTTGATGA---T-G--GTGTGTATTGGATTAGAGCTCGTTGGTATATGATACCTGAAG 822
|||||||||| | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 AAGTTGATGATGGTGGTTGTGTGTATTGGATTAGAGCTCGTTGGTATATGATACCTGAAG 835
Query 823 AGACGGTTTTAGGGAGACAA-CGTCATAATCTGAAACGAGAGCTTTATTTGACGAATGAT 881
||||||||| |||| | ||| || |||||| |||| || |||||||||||||||||||||
Sbjct 836 AGACGGTTTCAGGGCGTCAACCG-CATAATTTGAAGCGCGAGCTTTATTTGACGAATGAT 894
Query 882 TTTGCTGATATAGAGATGGAATGTGTTCTTAGGCATTGTTTTGTGAAATGTCCTAAGGAG 941
||||||||| |||||||||||||| ||||||||||||||||||| || ||||||||||||
Sbjct 895 TTTGCTGATGTAGAGATGGAATGTATTCTTAGGCATTGTTTTGTCAAGTGTCCTAAGGAG 954
Query 942 TTTTCGAAAGCTAGTAATGATGGTGATGATGTGTTTTTGTGTGAGTATGAGTATGATGTT 1001
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 TTTTCGAAAGCGAGTAATGATGGTGATGATGTGTTTTTGTGTGAGTATGAGTATGATGTG 1014
Query 1002 CATTGGGGTAGCTTTAAGCGTGTGGCTGAATTGGCTGATGGAGATGAGGATAGTGATCAA 1061
|||||| |||| ||||||||| |||| |||||||||||||||||| ||||||||||||
Sbjct 1015 CATTGGCGTAGTTTTAAGCGTTTGGCCGAATTGGCTGATGGAGATTCTGATAGTGATCAA 1074
Query 1062 GAATGGAATGGTAGGAAAGAGGAGGAGATTGATTATAGTGATGAAGAGATTGAGTTTGAT 1121
|| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 1075 GAGTGGAATGGTAGGAAAGAGGAGGAGATTGATGATAGTGATGAAGAGATGGAGTTTGAT 1134
Query 1122 GATGAA-----G-AGAGTGTTCGTGG-GGTTTCGAA-GAGTAAGC--GAGGTGGTGCAAA 1171
|| ||| | ||||| || || |||| || |||| || |||| ||||| ||
Sbjct 1135 GACGAAGTTTCGAAGAGTAAGCGAGGATGTTT--AACGAGT--GCAAGAGGAGGTGCGAA 1190
Query 1172 TTCTCGTAAAGGGCGTTTCTTTGGGCTTGAGAAGGTGGGGATG--AAG-AGGATTCCTGA 1228
|||||||||||||||||||||||| ||||||||||| |||| | ||| | |||||||||
Sbjct 1191 TTCTCGTAAAGGGCGTTTCTTTGGTCTTGAGAAGGT-GGGA-GCAAAGCA-GATTCCTGA 1247
Query 1229 ACATGTGAGATGTCATAAGCAGAGTGAGTTAGAAAAGGCGAAGGCTACTTTGTTGTTGGC 1288
||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||
Sbjct 1248 ACATGTGAGATGTCATAAGCAAACTGAGTTAGAAAAGGCGAAAGCTACTTTGTTGTTGGC 1307
Query 1289 TACACGTCCTAAGTCACTTCCTTGTAGAAGCAAAGAAATGGAAGAGATCACTGCGTTTAT 1348
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1308 TACACGTCCTAAGTCTCTTCCTTGTAGAAGCAAAGAAATGGAAGAGATCACTGCATTTAT 1367
Query 1349 AAAAGGCTCAATCTCTGATGATCAGTGTTTAGGTAGATGTATGTATATTCATGGTGTTCC 1408
|||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1368 AAAAGGTTCAATCTCGGATGATCAGTGTTTAGGAAGATGTATGTATATTCATGGTGTTCC 1427
Query 1409 CGGTACTGGGAAGACTATTAGTGTGTTATCTGTTATGAAGAATCTGAAA-GCTGAGGTTG 1467
||| ||||||||||| |||||||| ||||| |||||||||||||| ||| ||||||||||
Sbjct 1428 CGGGACTGGGAAGACGATTAGTGTATTATCGGTTATGAAGAATCT-AAAGGCTGAGGTTG 1486
Query 1468 AAGCGGGAAGCGTAAGTCCATATTGCTTTGTGGAGATAAATGGTCTCAAATTGGCTTCTC 1527
||| ||||||||| || |||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1487 AAGAGGGAAGCGTTAGCCCATATTGCTTTGTGGAGATCAATGGTCTCAAATTGGCTTCAC 1546
Query 1528 CTGAGAACATTTACAGTGTTATCTATGAGGGGTTGAGTGGTCATCGTGT-AGGTTGGAAG 1586
|||||||||||||||| ||||||||||| | ||||||||||||||| || | ||||||||
Sbjct 1547 CTGAGAACATTTACAGCGTTATCTATGAAGCGTTGAGTGGTCATCGAGTCA-GTTGGAAG 1605
Query 1587 AAAGCTCTACAGTCTCTGAATGAGAGGTTTGCAGAGGGAAAAAAGATAGGTAAAG-AGAA 1645
||||||||||||||| | ||||||||||||||||| ||||||| ||| ||||||| || |
Sbjct 1606 AAAGCTCTACAGTCTTTAAATGAGAGGTTTGCAGAAGGAAAAAGGATTGGTAAAGAAG-A 1664
Query 1646 TGAAAAGCCTTGCATACTTCTCATCGACGAGCTTGATGTTCTAGTCACTAGAAATCAGTC 1705
||| |||||||||||||||||||||||||| |||||| ||||||| |||||||| |||||
Sbjct 1665 TGAGAAGCCTTGCATACTTCTCATCGACGAACTTGATCTTCTAGTAACTAGAAACCAGTC 1724
Query 1706 TGTTTTATACAACATTTTGGATTGGCCTACCAAGCCTAACTCCAAATTGGTTGTGTTGGG 1765
||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1725 GGTTTTATACAATATTCTGGATTGGCCTACCAAGCCTAACTCCAAATTGGTTGTGTTGGG 1784
Query 1766 AATAGCAAACACTATGGATCTTCCAGAGAAGTTGCTTCCTCGGATATCAAGCCGAATGGG 1825
|||||||||||| |||||||||||||||||| |||||||||| || ||||||||||||||
Sbjct 1785 AATAGCAAACACGATGGATCTTCCAGAGAAGCTGCTTCCTCGAATTTCAAGCCGAATGGG 1844
Query 1826 TATACAGAGACTGTGTTTCGGTCCTTATAACCACAGGCAGCTACAAGAAATCATTTCTAC 1885
|||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1845 TATACAGAGACTATGTTTCGGTCCTTATAACCACACTCAGCTACAAGAAATCATTTCTAC 1904
Query 1886 AAGGTTGGAAGGAATCAATGCTTTTGAGAAGACAGCTATCGAATTTGCTTCAAGAAAAGT 1945
||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1905 AAGGTTGAAAGGAATCAATGCTTTTGAGAAGACAGCTATTGAATTTGCTTCGAGAAAAGT 1964
Query 1946 AGCTGCGATATCAGGAGATGCAAGACGCGCGCTTGAGATATGCAGGCGTGCAGCGGAAGT 2005
|||||| || ||||||||||||||||| |||||||||||||||||||| || || |||||
Sbjct 1965 AGCTGCTATTTCAGGAGATGCAAGACGTGCGCTTGAGATATGCAGGCGAGCTGCAGAAGT 2024
Query 2006 AGCGGATTACCGTCTAAAGAAGAGTAACATATCTGCAAAGAGTCAGCTGGTGATTATGGC 2065
||||||| |||||||||||| | ||||| | ||||||||| ||||||||| ||||||||
Sbjct 2025 AGCGGATCACCGTCTAAAGA-G--TAACAAAACTGCAAAGAATCAGCTGGTAATTATGGC 2081
Query 2066 AGATGTTGAAGTAGCCATTCAAGAGATGTTTCAGGCACCTCATATTCAAGTTATGAAGAG 2125
|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2082 AGATGTTGAAACAGCTATTCAAGAGATGTTTCAGGCACCTCATATTCAAGTTATGAAGAG 2141
Query 2126 TGTATCGAAACTGAGTAGGATCTTCTTGACGGCTATGGTTCATGAGCTTTACAAAACAGG 2185
|||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 2142 CGTATCGAAACTGAGTAAGATCTTCTTGACGGCTATGGTTCACGAGCTTTACAAAACAGG 2201
Query 2186 AATGGCAGAGACAAGCTTTGACAGAGTAGCAACAACAGTATCGTCTATTTGCTTAACCAA 2245
|||||||||||||| ||||||| |||| |||||||||||||| |||||||||||||||||
Sbjct 2202 AATGGCAGAGACAACCTTTGACCGAGTGGCAACAACAGTATCATCTATTTGCTTAACCAA 2261
Query 2246 TGGTGAAGCTTTTCCCGGTTGGGACATTCTTCTCAAAATCGGTTGTGATCTTGGTGAATG 2305
||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2262 TGGAGAAGCTTTTCCAGGTTGGGACATTCTTCTCAAAATCGGTTGCGATCTTGGTGAATG 2321
Query 2306 CAGAATCGTTCTTTGTGAACCTGGAGAGAAGCACAGATTGCAGAAGCTGCAGCTTAATTT 2365
|||||| |||| |||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 2322 TAGAATCATTCTCTGTGAACCTGGAGAGAAGCATAGATTGCAGAAGCTGCAGCTGAATTT 2381
Query 2366 TCCAAGTGATGATGTTGCTTTTGCATTGAAAGACAATAAGGATCTTCCATGGTTGGCCAA 2425
||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||
Sbjct 2382 TCCAAGTGATGATGTTGCTTTTGCATTGAAAGATAACAAGGATCTTCCATGGCTGGCCAA 2441
Query 2426 TTACTTGTGA-TTTTTT 2441
|||||||||| ||||||
Sbjct 2442 TTACTTGTGAGTTTTTT 2458
> Ahg493435 jgi|Araly1|493435|fgenesh2_kg.7__2868__AT4G14700.1
Length=2082
Score = 1437 bits (778), Expect = 0.0
Identities = 988/1085 (91%), Gaps = 32/1085 (3%)
Strand=Plus/Plus
Query 1051 ATAGTGATCAAGAATGGAATGGTAGG-AAAGAGGAGGAGATTGATTATAGTGATGAAGAG 1109
||| ||||||||||||||||||| || |||||||||||||||||| |||||||| |
Sbjct 660 ATA-TGATCAAGAATGGAATGGT-GGTAAAGAGGAGGAGATTGATGATAGTGAT-----G 712
Query 1110 ATTGAGTTTGATGATGAAGAGAGTGTTCGTGGGGTTTCGAAGAGTAAGCGAGG--T---G 1164
| |||| || | | | | |||||| ||| | ||| ||||||||| |||| | |
Sbjct 713 A-TGAG---GA--A-G-A-A-AGTGTTTGTGCAGATTCAAAGAGTAAGAGAGGTTTAACG 762
Query 1165 -GTGCAAAT-TCTCGTAAAGGGCGTTTCTTTGGGCTTGAGAAGGTGGGGA-TGAAGAGGA 1221
|||| ||| | ||||||||||||| ||||||||||||| |||||||| | | ||| |||
Sbjct 763 TGTGCGAATGT-TCGTAAAGGGCGTATCTTTGGGCTTGAAAAGGTGGGAACT-AAGCGGA 820
Query 1222 TTCCTGAACATGTGAGATGTCATAAGCAGAGTGAGTTAGAAAAGGCGAAGGCTACTTTGT 1281
|||| ||||||||||||| ||||||| ||| |||||||||||| ||||| ||||||||||
Sbjct 821 TTCCGGAACATGTGAGATTTCATAAGAAGAATGAGTTAGAAAAAGCGAAAGCTACTTTGT 880
Query 1282 TGTTGGCTACACGTCCTAAGTCACTTCCTTGTAGAAGCAAAGAAATGGAAGAGATCACTG 1341
||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 881 TGTTGGCTACAAGTCCTAAGTCTCTTCCTTGTAGAAGCAAAGAAATGGAAGAGATCACCG 940
Query 1342 CGTTTATAAAAGGCTCAATCTCT-GATGATCAGTGTTTAGGTAGATGTATGTATATTCAT 1400
| |||||||| || ||||||| | ||||||||||||||||| ||||||||||||||||||
Sbjct 941 CATTTATAAAGGGTTCAATCT-TGGATGATCAGTGTTTAGGAAGATGTATGTATATTCAT 999
Query 1401 GGTGTTCCCGGTACTGGGAAGACTATTAGTGTGTTATCTGTTATGAAGAATCTGAAA-GC 1459
||||||||||| |||||||||||||||| |||| ||||||||||||||||||| ||| ||
Sbjct 1000 GGTGTTCCCGGGACTGGGAAGACTATTACTGTGCTATCTGTTATGAAGAATCT-AAAGGC 1058
Query 1460 TGAGGTTGAAGCGGGAAGCGTAAGTCCATATTGCTTTGTGGAGATAAATGGTCTCAAATT 1519
|||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||
Sbjct 1059 TGAGGTTGAAGCGGGAAGCGTAAGCCCTTATTGCTTTGTGGAGATCAATGGTCTCAAATT 1118
Query 1520 GGCTTCTCCTGAGAACATTTACAGTGTTATCTATGAGGGGTTGAGTGGTCATCGTGTAGG 1579
|||||| |||||||||||||||||| |||||||||| | | ||||||||||||| || ||
Sbjct 1119 GGCTTCACCTGAGAACATTTACAGTTTTATCTATGAAGCGCTGAGTGGTCATCGCGTTGG 1178
Query 1580 TTGGAAGAAAGCTCTACAGTCTCTGAATGAGAGGTTTGCAGAGGGAAAAAAGATAGGTAA 1639
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||
Sbjct 1179 TTGGAAGAAAGCTCTACAGTCTCTGAATGAGAGGTTTGCAGAAGGAAAAAGGATTGGTAA 1238
Query 1640 AGAGAATGAAAAGCCTTGCATACTTCTCATCGACGAGCTTGATGTTCTAGTCACTAGAAA 1699
|||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||
Sbjct 1239 AGAGAATGAAAAGCCTTGTATACTTCTCATCGACGAACTTGATCTTCTAGTCACTAGAAA 1298
Query 1700 TCAGTCTGTTTTATACAACATTTTGGATTGGCCTACCAAGCCTAACTCCAAATTGGTTGT 1759
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 1299 TCAGTCTGTTTTATACAATATTTTGGATTGGCCTACCAAGCCTAACTCCAGATTGGTTGT 1358
Query 1760 GTTGGGAATAGCAAACACTATGGATCTTCCAGAGAAGTTGCTTCCTCGGATATCAAGCCG 1819
||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 1359 GTTGGGAATAGCAAACACTATGGATCTTCCAGAGAAGGTGCTTCCTCGGATTTCAAGCCA 1418
Query 1820 AATGGGTATACAGAGACTGTGTTTCGGTCCTTATAACCACAGGCAGCTACAAGAAATCAT 1879
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 1419 AATGGGTATACAGAGACTGTGTTTTGGTCCTTATAACCACATGCAGCTACAAGAAATCAT 1478
Query 1880 TTCTACAAGGTTGGAAGGAATCAATGCTTTTGAGAAGACAGCTATCGAATTTGCTTCAAG 1939
||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1479 TTCTACAAGATTGAAAGGAATCAATGCTTTTGAGAAGACAGCTATTGAATTTGCTTCGAG 1538
Query 1940 AAAAGTAGCTGCGATATCAGGAGATGCAAGACGCGCGCTTGAGATATGCAGGCGTGCAGC 1999
||| ||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1539 AAAGGTAGCTGCGGTTTCAGGAGATGCAAGACGTGCGCTTGAGATATGCAGGCGTGCAGC 1598
Query 2000 GGAAGTAGCGGATTACCGTCTAAAGAAGAGTAACATATCTGCAAAGAGTCAGCTGGTGAT 2059
||||||||||| |||||||||||||||| ||||| | ||||||||||||||||||||||
Sbjct 1599 AGAAGTAGCGGAGTACCGTCTAAAGAAGACTAACAAAACTGCAAAGAGTCAGCTGGTGAT 1658
Query 2060 TATGGCAGATGTTGAAGTAGCCATTCAAGAGATGTTTCAGGCACCTCATATTCAAGTTAT 2119
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1659 TATGGCAGATGTTGAAGTAGCCATTCAAGAGATGTTTCAGGCACCGCATATTCAAGTTAT 1718
Query 2120 GAAGA 2124
|||||
Sbjct 1719 GAAGA 1723
Score = 521 bits (282), Expect = 8e-147
Identities = 336/361 (93%), Gaps = 8/361 (2%)
Strand=Plus/Plus
Query 2173 TTTACAAAACAGGAATGGCAGAGACAAGC-TTTGACAGAGTAGCAACAACAGTATCGTCT 2231
||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||
Sbjct 1727 TTTACAAAACAGGAATGGCAGAGACAA-CTTTTGACAGAGTGGCAACAACAGTATCGTCT 1785
Query 2232 ATTTGCTTAACCAATGGTGAAGCTTTTCCCGGTTGGGACATTCTTCTCAAAATCGGTTGT 2291
|||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||
Sbjct 1786 CTTTGCTTAACCAATGGAGAAGCTTTTCCGGGTTGGGACATTCTTCTCAAAATCAGTTGC 1845
Query 2292 GATCTTGGTGAATGCAGAATCGTTCTTTGTGAACCTGGAGAGAAGCACAGATTGCAGAAG 2351
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1846 GATCTTGGTGAATGCAGAATCGTTCTCTGTGAACCTGGAGAGAAGCACAGATTGCAGAAG 1905
Query 2352 CTGCAGCTTAATTTTCCAAGTGATGATGTTGCTTTTGCATTGAAAGACAATAAGGATCTT 2411
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1906 CTGCAGCTGAATTTTCCAAGTGATGATGTTGCTTTTGCATTGAAAGACAATAAGGATCTT 1965
Query 2412 CCATGGTTGGCCAATTACTTGTGATTTTTTGCTAGTTTAAGGAAAACTTTGGAGAGATTG 2471
||||||||| |||||||||||||| |||||||||||||||||||||||| ||| | |||
Sbjct 1966 CCATGGTTGCCCAATTACTTGTGAGTTTTTGCTAGTTTAAGGAAAACTT-GGATA--TTG 2022
Query 2472 ATAATGTAACACA--GTTTGATTTCTGGAGTATAAACTATAAATACAGTTACAACACAAC 2529
||| |||||| || ||||||||||||| ||||||| |||||||| ||||||| |||||
Sbjct 2023 ATA-TGTAACGCATAGTTTGATTTCTGGTGTATAAAGTATAAATATTGTTACAAGACAAC 2081
Query 2530 C 2530
|
Sbjct 2082 C 2082
Score = 396 bits (214), Expect = 5e-109
Identities = 309/354 (87%), Gaps = 9/354 (3%)
Strand=Plus/Plus
Query 283 AGAAGTCGAAGAAGAAGAAGATAGATCCGGAAGTTTCCTTCTCTCCTGTTTCACCAATTC 342
||||| ||||||||||||||||| | ||||| ||| ||||||||| || |||| ||
Sbjct 2 AGAAGAAGAAGAAGAAGAAGATAGCTGAGGAAGCTTCGTTCTCTCCTACATCCCCAAATC 61
Query 343 GATCTGagacgaagaagacgaagaagaagaagagaGTTTATTACAACAAAGTCGAATTCG 402
||||||||||| | | |||||||||||||| |||||||||||||| ||||| ||||||
Sbjct 62 GATCTGAGACG-A-TA-ACGAAGAAGAAGAACAGAGTTTATTACAATAAAGTTGAATTCA 118
Query 403 ACGAAACCGAATTCGAAATCGGTGATGATGTTTACGTTAAaagaacagaagacgcgaatc 462
| | ||||||||| ||||| |||||| ||||||||||||| |||| ||||||| |||||
Sbjct 119 ATGTAACCGAATTTGAAATTGGTGATCATGTTTACGTTAAGAGAAGAGAAGACACGAATT 178
Query 463 cagatgaagaagaagaagaagatccagaaatcgaagaTTGTCAGATCTGCTTCAAATCAC 522
||||| |||||||||||||||||||| ||||||||||||||||| || |||||||||
Sbjct 179 CAGAT---GAAGAAGAAGAAGATCCAGAGATCGAAGATTGTCAGATGTGTTTCAAATCAG 235
Query 523 ATACTAACACAATAATGATTGAATGTGATGATTGTTTAGGTGGATTTCATTTGAATTGCT 582
||||| | || ||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 236 ATACT-A-AC-ATAATGATTGAATGTGATGATTGTTTAGGCGGGTTTCATTTGAATTGCT 292
Query 583 TGAAACCGCCATTGAAGGAAGTTCCTGAAGGTGATTGGATCTGTCAATTCTGTG 636
|||||||||||||||| || ||||| |||||||||||||||||||||||||||
Sbjct 293 TGAAACCGCCATTGAAAGATGTTCCCAAAGGTGATTGGATCTGTCAATTCTGTG 346
Score = 318 bits (172), Expect = 1e-85
Identities = 198/211 (94%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 797 AGCTCGTTGGTATATGATACCTGAAGAGACGGTTTTAGGGAGACAACGTCATAATCTGAA 856
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 447 AGCTCGTTGGTATATGATACCTGAAGAGACGGTTTCGGGGAGACAACGGCATAATCTGAA 506
Query 857 ACGAGAGCTTTATTTGACGAATGATTTTGCTGATATAGAGATGGAATGTGTTCTTAGGCA 916
||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 507 ACGCGAGCTTTATTTGACGAATGATTTTGCTGATATAGAGATGGAATGTCTTCTTAGGCA 566
Query 917 TTGTTTTGTGAAATGTCCTAAGGAGTTTTCGAAAGCTAGTAATGATGGTGATGATGTGTT 976
||||| ||| || ||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 567 TTGTTATGTCAAGTGTCCTATGGAGTTTTCGAAAGCGAGTAATGATGGTGATGATGTGTT 626
Query 977 TTTGTGTGAGTATGAGTATGATGTTCATTGG 1007
||| ||||||||||| |||||||| ||||||
Sbjct 627 TTTATGTGAGTATGAATATGATGTGCATTGG 657
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95377973480
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5