BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14710.5
Length=1030
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946890 jgi|Araly1|946890|scaffold_703119.1 981 0.0
Ahg493429 jgi|Araly1|493429|fgenesh2_kg.7__2862__AT4G14716.1 894 0.0
Ahg481495 jgi|Araly1|481495|fgenesh2_kg.4__555__AT2G26400.1 732 0.0
> Ahg946890 jgi|Araly1|946890|scaffold_703119.1
Length=643
Score = 981 bits (531), Expect = 0.0
Identities = 579/603 (96%), Gaps = 0/603 (0%)
Strand=Plus/Plus
Query 255 GATGGAAGAGAAGAAGTGATCCAGGCATGGTATATGGATGATAGCGAAGAGGATCAGAGA 314
|||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 41 GATGGAAGAGAAGATGTGATCCAGGCTTGGTATATGGATGACAGCGAAGAGGATCAGAGA 100
Query 315 CTTCCTCACCACAAGGATCCTAAGGAGTTTCTATCTTTGGACAAACTTGCAGAGCTGGGA 374
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 101 CTTCCTCACCACAAGGATCCTAAGGAGTTTCTATCTTTGGATAAACTTGCAGAGCTGGGA 160
Query 375 GTACTTAGCTGGAGACTTGATGCTGATAACTATGAAACCGATGAGGATTTGAAAAAGATC 434
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 161 GTACTTAGCTGGAGACTTGATGCTGATAACTACGAAACCGATGAGGAATTGAAAAAGATC 220
Query 435 CGCGAATCTCGTGGTTACTCTTACATGGACTTTTGTGAGGTATGCCCGGAAAAGCTTCCA 494
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 221 CGCGAATCTCGTGGTTACTCCTACATGGACTTTTGTGAGGTATGCCCGGAAAAGCTTCCA 280
Query 495 AACTATGAAGTGAAAGTGAAGAGCTTTTTCGAAGAACATTTGCACACTGATGAAGAGATC 554
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 281 AACTATGAAGAGAAAGTAAAGAGCTTTTTCGAAGAACATTTGCACACTGATGAAGAGATC 340
Query 555 CGTTACTGCGTTGCAGGAAGCGGTTACTTTGATGTGAGGGATCGCAATGAAGCTTGGATT 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 341 CGTTACTGCGTTGCAGGAAGCGGTTACTTTGATGTGAGGGATCGCAATGAAGCTTGGATT 400
Query 615 AGAGTATGGGTAAAGAAGGGAGGTATGATAGTCTTACCTGCTGGAATATATCATCGCTTC 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 401 AGAGTATGGGTAAAGAAGGGAGGTATGATAGTCTTACCTGCTGGAATATATCATCGCTTC 460
Query 675 ACCGTAGACTCAGACAACTATATCAAGGCAATGCGGCTTTTCGTGGGTGAACCGGTCTGG 734
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 461 ACCGTGGACTCAGACAACTATATCAAGGCAATGCGGCTTTTCGTGGGTGAACCGGTGTGG 520
Query 735 ACACCATACAATCGCCCACACGACCACCTCCCTGCAAGGAAAGAGTACATCGATAATTTC 794
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 521 ACACCATACAATCGCCCACACGACCATCTCCCTGCAAGGAAAGAGTACGTCGATAATTTC 580
Query 795 GTGAAGGTGAATGAAGGTGGTGTCATAGACGCGTCAGCCTAGAGGATTCTCAGTCTTATG 854
|| ||||||| || || |||| ||||||||| ||||| ||||||| ||||||||| | |
Sbjct 581 GTCAAGGTGAGTGGGGGCGGTGCCATAGACGCATCAGCGTAGAGGACTCTCAGTCTCAGG 640
Query 855 CAT 857
|||
Sbjct 641 CAT 643
Score = 67.6 bits (36), Expect = 2e-10
Identities = 36/36 (100%), Gaps = 0/36 (0%)
Strand=Plus/Plus
Query 94 GAAGAGGAACAAACAACCATGGGTGAAGTGGTTAAG 129
||||||||||||||||||||||||||||||||||||
Sbjct 5 GAAGAGGAACAAACAACCATGGGTGAAGTGGTTAAG 40
> Ahg493429 jgi|Araly1|493429|fgenesh2_kg.7__2862__AT4G14716.1
Length=820
Score = 894 bits (484), Expect = 0.0
Identities = 524/544 (96%), Gaps = 0/544 (0%)
Strand=Plus/Plus
Query 255 GATGGAAGAGAAGAAGTGATCCAGGCATGGTATATGGATGATAGCGAAGAGGATCAGAGA 314
|||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||
Sbjct 35 GATGGAAGAGAAGAAGTGATTCAGGCTTGGTATATGGATGATAGTGAAGAGGATCAGAGA 94
Query 315 CTTCCTCACCACAAGGATCCTAAGGAGTTTCTATCTTTGGACAAACTTGCAGAGCTGGGA 374
||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 95 CTTCCTCACCATAAGGATCCTAAAGAGTTTGTATCTTTGGACAAACTTGCAGAGCTGGGA 154
Query 375 GTACTTAGCTGGAGACTTGATGCTGATAACTATGAAACCGATGAGGATTTGAAAAAGATC 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 155 GTACTTAGCTGGAGACTTGATGCTGATAACTATGAAACCGATGAGGATTTGAAAAAGATC 214
Query 435 CGCGAATCTCGTGGTTACTCTTACATGGACTTTTGTGAGGTATGCCCGGAAAAGCTTCCA 494
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 215 CGCGAATCCCGTGGCTACTCTTACATGGACTTTTGTGAGGTATGCCCGGAAAAGCTTCCA 274
Query 495 AACTATGAAGTGAAAGTGAAGAGCTTTTTCGAAGAACATTTGCACACTGATGAAGAGATC 554
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 275 AACTATGAAGTGAAAGTAAAGAGCTTTTTCGAAGAACATTTGCACACTGATGAAGAGATC 334
Query 555 CGTTACTGCGTTGCAGGAAGCGGTTACTTTGATGTGAGGGATCGCAATGAAGCTTGGATT 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 335 CGTTACTGCGTTGCAGGAAGCGGTTACTTTGATGTGAGGGATCGCAATGAAGCTTGGATT 394
Query 615 AGAGTATGGGTAAAGAAGGGAGGTATGATAGTCTTACCTGCTGGAATATATCATCGCTTC 674
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 395 AGAGTATGGGTAAAGAAGGGAGGTATGATAGTCTTACCTGCTGGAATATATCACCGCTTC 454
Query 675 ACCGTAGACTCAGACAACTATATCAAGGCAATGCGGCTTTTCGTGGGTGAACCGGTCTGG 734
|| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 455 ACTGTGGACTCAGACAACTATATCAAGGCAATGCGGCTTTTCGTGGGTGAACCGGTGTGG 514
Query 735 ACACCATACAATCGCCCACACGACCACCTCCCTGCAAGGAAAGAGTACATCGATAATTTC 794
|||||||||||||| ||||||||||| || |||||||||||||| ||| ||||||| |||
Sbjct 515 ACACCATACAATCGGCCACACGACCATCTTCCTGCAAGGAAAGAATACGTCGATAACTTC 574
Query 795 GTGA 798
|||
Sbjct 575 ATGA 578
> Ahg481495 jgi|Araly1|481495|fgenesh2_kg.4__555__AT2G26400.1
Length=726
Score = 732 bits (396), Expect = 0.0
Identities = 551/625 (88%), Gaps = 13/625 (2%)
Strand=Plus/Plus
Query 260 AAGAGAAGAAGTGATCCAGGCATGGTATATGGATGATAGCGAAGAGGATCAGAGACTTCC 319
||||||||||| ||| || || |||||| ||||||| | ||||||||||||| ||||||
Sbjct 36 AAGAGAAGAAGCGATTCAAGCTTGGTATTTGGATGACAATGAAGAGGATCAGAAACTTCC 95
Query 320 TCACCACAAGGATCCTAAGGAGTTTCTATCTTTGGACAAACTTGCAGAGCTGGGAGTACT 379
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 96 TCACCACAAGGATCCTAAGGAGTTTGTATCTTTGGACAAACTTGCAGAGCTTGGAGTACT 155
Query 380 TAGCTGGAGACTTGATGCTGATAACTATGAAACCGATGAGGATTTGAAAAAGATCCGCGA 439
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 156 TAGCTGGAGACTTGACGCTGATAACTATGAAACCGATGAGGAGTTGAAAAAGATCCGCGA 215
Query 440 ATCTCGTGGTTACTCTTACATGGACTTTTGTGAGGTATGCCCGGAAAAGCTTCCAAACTA 499
||||||||||||||| ||||||||| |||||||||| || || ||||||||||||||||
Sbjct 216 ATCTCGTGGTTACTCCTACATGGACATTTGTGAGGTGTGTCCAAAAAAGCTTCCAAACTA 275
Query 500 TGAAGTGAA-AGTGAAGA-GCTTTTTCGAAGAACATTTGCACACTGATGAAGAGATCCGT 557
||||| || ||| |||| | ||||| | ||||||||| |||| |||||||||||| |||
Sbjct 276 TGAAG-CAACAGTAAAGATG-TTTTTTGTAGAACATTTACACATTGATGAAGAGATTCGT 333
Query 558 TACTGCGTTGCAGGAAGCGGTTACTTTGATGTGAGGGATCGCAATGAAGCTTGGATTAGA 617
|||||| | |||||||| || ||||||||||||||||||| |||||| | ||||||||||
Sbjct 334 TACTGCCTCGCAGGAAGTGGATACTTTGATGTGAGGGATCTCAATGATGTTTGGATTAGA 393
Query 618 GTATGGGTAAAGAAGGGAGGTATGATAGTCTTACCTGCTGGAATATATCATCGCTTCACC 677
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 394 GTATGGGTAAAGAAGGGAGGTATGATAGTCTTCCCTGCTGGAATATATCATCGCTTCACC 453
Query 678 GTAGACTCAGACAACTATATCAAGGCAATGCGGCTTTTCGTGGGTGAACCGGTCTGGACA 737
|| ||||||||||| ||||| ||||||||||||||||||||||||| ||| || |||||
Sbjct 454 GTGGACTCAGACAATTATATGAAGGCAATGCGGCTTTTCGTGGGTGGACCAGTGTGGACT 513
Query 738 CCATACAATCGCCCACACGACCACCTCCCTGCAAGGAAAGAGTACATCGATAATTTCGTG 797
| |||||||||||||||||||| || |||||||||| || ||| || ||||| ||||||
Sbjct 514 GCTTACAATCGCCCACACGACCATCTTCCTGCAAGGATAGCGTATATGGATAAATTCGTG 573
Query 798 AAGGTGAATGAAGGTG-GTGTCATAGACGCGTCAGCCTAGAGG-ATTCTCAGTCTTATGC 855
||||||| | | || || ||||||||| ||||| |||||| | |||||| ||
Sbjct 574 AAGGTGATT-AGGGACCGTACCATAGACGCTTCAGCGTAGAGGGACTCTCAG------GC 626
Query 856 ATCAGATTTCTATAAACTAAGCATA 880
||||||||||||||| |||| ||||
Sbjct 627 ATCAGATTTCTATAAGCTAAACATA 651
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38313531585
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5