BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14713.1
Length=1438
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493434 jgi|Araly1|493434|fgenesh2_kg.7__2867__AT4G14713.1 1424 0.0
Ahg890856 jgi|Araly1|890856|Al_scaffold_0007_2842 1103 0.0
> Ahg493434 jgi|Araly1|493434|fgenesh2_kg.7__2867__AT4G14713.1
Length=1350
Score = 1424 bits (771), Expect = 0.0
Identities = 1226/1427 (86%), Gaps = 106/1427 (7%)
Strand=Plus/Plus
Query 4 CTCACTCTCTCTCGCCACTGTTCCGCTCTCTCTCATTCTTCCTAATTTTACCCCCAAAAC 63
||| ||||||||| ||||| |||||| ||||||||| |||||||||||||||||||| |
Sbjct 1 CTCTCTCTCTCTCTTCACTGCTCCGCTTTCTCTCATTGTTCCTAATTTTACCCCCAAATC 60
Query 64 CTCCGATTATTACTGAAACGCCACTGCTCTCTCGCCGGGATTCCGGTGAAGAGGAGGAGA 123
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTCCAATTATTACTGAAACGCCACTGCTCTCTCGCCGGGATTCCGGTGAAGAGGAGGAGA 120
Query 124 TGGATGTCGGAGTTTCACCGGCGAAGTCTATACTTGCGAAACCTCTGAAGCTACTCACTG 183
|||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||
Sbjct 121 TGGATGTCGGAGTTTCGTCGGCGAAGTCTATACTTGCGAAGCCACTGAAGCTACTCACTG 180
Query 184 AAGAGGACATTTCTCAGCTCACTCGCGAAGACTGCCGCAAATTCCTCAAAGACAAAGGAA 243
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 181 AAGAAGACATTTCTCAGCTCACTCGCGAAGACTGCCGTAAATTCCTCAAAGACAAAGGAA 240
Query 244 TGCGAAGACCGTCGTGGAACAAATCTCAGGCGATCCAGCAAGTTTTATCTCTTAAAGCTC 303
||||||| || || ||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 241 TGCGAAGGCCTTCTTGGAACAAATCTCAGGCGATCCAGCAAGTTTTATCCCTCAAAGCTC 300
Query 304 TCTATGAGCCTGGAGACGATTCCGGCGCCGGTATCTTCCGCAAGATCCTCGTTTCTCAGC 363
||| |||||| || ||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 301 TCTTTGAGCCCGGTGACGATTCCGGCGCCGGTATCCTCCGCAAGATCCACGTTTCTCAGC 360
Query 364 CAGTAAATCCGCCTCGCGTCACAACAACGTTGATTGAGCCAAGCAACGAGC-TGGAAGCT 422
| | ||||||||||||||| |||||||| | ||||||| ||| ||
Sbjct 361 CGGCAAATCCGCCTCGCGTTACAACAAC------T---------AACGAGCTTGG-AGAG 404
Query 423 TGTGGCCGGGTTTCTTATCCGGAAGATAACGGCGCGTGCCATAGAAT-GGATTCTCCAAG 481
||||||||| | ||| || ||||||| ||||| | ||||| || || |||||||||||
Sbjct 405 TGTGGCCGGAATCCTTTTCAGGAAGATGACGGCCCATGCCACAG-ATGGGATTCTCCAAA 463
Query 482 ATCAGCTGAGTTTTCCGGTGGGTCTGGTCACTTTGTATCCGAGAAAGATGGCCACAAGAC 541
|||||||||||||||||| || |||| ||| |||| | || || | || |
Sbjct 464 ATCAGCTGAGTTTTCCGGCGGTTCTGCTCA----GTAT----G-CAG-CGG--AGAA-A- 509
Query 542 GACTATTTCTCCCAGAAGCCCAGCTGAAACAAGTGAGCTCGTTGGGCAAATGACGATATT 601
|| || || |||||||||||||||||| |||| ||| |||||||||||| |||| ||
Sbjct 510 GA-TA--CCT-GCAGAAGCCCAGCTGAAACGAGTGCGCTGGTTGGGCAAATGGCGATTTT 565
Query 602 CTATAGTGG-AAAAGTGAATGTGTATGATGGAATACCACCTGAAAAGGCCCGGTCAATCA 660
||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 566 CTATAGTGGCAAAA-TGAATGTGTATGATGGAGTACCACCTGAAAAGGCCCGGTCAATTA 624
Query 661 TGCACTTTGCAGCCAATCCAATTGATTTGCCTGAAAACGGTATTTTTGCTTCCAGTAGAA 720
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 625 TGCACTTTGCAGCCAATCCAATTGATTTGCCTGAAAATGGTATTTTTGCTTCGAGTAGAA 684
Query 721 TGATTTCAAAGCTCATAAGTAAAGAGAAGATGATGGAACTTCCCCAAAAAGGCCTTGAGA 780
|||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 685 TGATTTCAAAGCGCATAAGTAAAGAGAAGATGGTGGAACTTCCCCAAAATGGCCTTGAGA 744
Query 781 AGGCGAATTCTTCTCGTGATTCTGGTATGGAGGGCCAGGCGAACAGAAAGGTATCTTTGC 840
||||||||| |||||||| ||||| ||||||||| ||||||||||||||||| |||||||
Sbjct 745 AGGCGAATTTTTCTCGTGTTTCTGATATGGAGGGTCAGGCGAACAGAAAGGTGTCTTTGC 804
Query 841 AAAGATATCGTGAAAAGCGGAAAGACAGAAAATTCTCAAAGGCCAAAAAGTGTCCAGGAG 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 805 AAAGATATCGTGAAAAGCGGAAAGACAGAAAATTCTCAAAGGCCAAAAAGTGTCCAGGAG 864
Query 901 TTGCGTCCTCTAGCTTGGAGATGTTTCTGAATTGTCAGCCACGGATGAAAGCTGCATATT 960
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 865 TTGCGTCCTCTAGCTTGGAGATGTTTCTGAATCGTCAGCCACGGATGAACGCTGCATATT 924
Query 961 CGCAAAACCTAGGCTGCACCGGATCTCCACTGCATAGCCAGTCACCTGAAAGCCAGACAA 1020
| |||||||| |||||||| |||| ||||||||| ||| |||||||||||| ||||||||
Sbjct 925 CACAAAACCTTGGCTGCACAGGATTTCCACTGCAAAGCGAGTCACCTGAAAACCAGACAA 984
Query 1021 AAAGTCCCAATCTTTCAGTTGATCTAAACAGTGAAGGCATTTAACAAGATAC-CGAAACG 1079
||||||||||||||||||||||||||||||||||||| | || |||| | | | |
Sbjct 985 AAAGTCCCAATCTTTCAGTTGATCTAAACAGTGAAGG--T--AAGAAGAGAATC-ATA-- 1037
Query 1080 TGGAGATGCTATAAGCTGTGAA-TAGGCGTTGAAACA-GTTGCTTG---CTTGTA-A-GC 1132
|||||| ||| | | | | || ||| || ||||| | ||| | | || | | ||
Sbjct 1038 TGGAGA-GCTTT--G-T-TAAAATAG---TT-AAACAAGATGCC-GAAACGTGGAGATGC 1087
Query 1133 TCA-AAGATATGAAGAAAAGAAACCTCTCTTCGGATCGGCCTTCTTTTGTGTTTCCGGGG 1191
| | |||||||||||||| |||||||| || || || |||||||||||
Sbjct 1088 T-ATAAGATATGAAGAAA-----CCTCTCTT----TC----TT-TT--GTGTTTCCGGG- 1129
Query 1192 TTTTGCACCCATAATTTTTGGTCTATAGTTTTGAGTAGAGCTTAGTAGGTTAGTGGTAAT 1251
|| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 1130 TT--GCACCCATAATTTTTTGTCTATAGTTTTGAGTAG--CTTAGTAGGTTAGTGGTAAG 1185
Query 1252 TTCTTGT-TT-CTGATTCTTTTTGT-GAGGATATAGTCACAGAGAGTAGAGACAAGAGAG 1308
||||||| || || |||||||||| ||||||||||||||||||| ||||||||||| ||
Sbjct 1186 TTCTTGTGTTTCT-ATTCTTTTTGGCGAGGATATAGTCACAGAGATTAGAGACAAGATAG 1244
Query 1309 G-------TGAAAGAAGGGCTTTCATTTTCTAGGTGTTGTA-ATGTGTAAATGATGTCTT 1360
| ||||||||| |||||||||||| ||| |||| ||||||||||| ||||||
Sbjct 1245 GGAAAAGATGAAAGAAGATCTTTCATTTTCT-GGTTTTGTTTATGTGTAAATGCTGTCTT 1303
Query 1361 ACTTGACAC--TTTTAACGAGAGAGA----CCTTTTAGCCAAAGTGT 1401
| ||||||| ||||||||||||||| ||||||||||||| |||
Sbjct 1304 ATTTGACACACTTTTAACGAGAGAGAGAGACCTTTTAGCCAAACTGT 1350
> Ahg890856 jgi|Araly1|890856|Al_scaffold_0007_2842
Length=975
Score = 1103 bits (597), Expect = 0.0
Identities = 833/942 (88%), Gaps = 35/942 (4%)
Strand=Plus/Plus
Query 123 ATGGATGTCGGAGTTTCACCGGCGAAGTCTATACTTGCGAAACCTCTGAAGCTACTCACT 182
|||||||| ||||| || ||||||||||||||||||| |||||||||||| || ||||||
Sbjct 1 ATGGATGTTGGAGTGTCTCCGGCGAAGTCTATACTTGAGAAACCTCTGAAACTGCTCACT 60
Query 183 GAAGAGGACATTTCTCAGCTCACTCGCGAAGACTGCCGCAAATTCCTCAAAGACAAAGGA 242
|||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct 61 GAAGAGGACATTTCTCAGCTTACTCGCGAAGATTGCCGCAAATTCCTCAAAGAGAAAGGA 120
Query 243 ATGCGAAGACCGTCGTGGAACAAATCTCAGGCGATCCAGCAAGTTTTATCTCTTAAAGCT 302
||||| || || |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 121 ATGCGCAGGCCTTCGTGGAACAAATCTCAGGCGATCCAGCAAGTTTTATCCCTTAAAGCT 180
Query 303 CTCTATGAGCCTGGAGACGATTCCGGCGCCGGTATCTTCCGCAAGATCCTCGTTTCTCAG 362
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 181 CTCTATGAGCCTGGAGACGATTCCGGCGCCGGAATCCTCCGCAAGATCCTCGTTTCTCAG 240
Query 363 CCAGT-AAATCCGCCTCGCGTCACAACAACGTTGATTGAGCCAAGCAACGAGCTGGAAGC 421
|| || ||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 241 CC-GTCAAATCCGCCTCGCGTTTCAACAACGTTGATTGAGCCAAGCAACGAGCTCGAAGC 299
Query 422 TTGTGGCCGGGTTTCTTATCCGGAAGATAACGGCGCGTGCCATAGAATGGATTCTCCAAG 481
|||||| | | ||| | ||| ||| ||||| |||||||||||| ||||||||||||
Sbjct 300 TTGTGG-CAAGATTC---T--GGAGGATGACGGCTCGTGCCATAGAAGGGATTCTCCAAG 353
Query 482 ATCAGCTGAGTTTTCCGGTGGGTCTGGTCACTTTGTAT-CCGAGAAAGATGGCCACAAGA 540
||||||||||||||| ||| | |||||||| ||||| | | || |||||| ||||| | |
Sbjct 354 ATCAGCTGAGTTTTCTGGTAGTTCTGGTCAGTTTGT-TGCGGATAAAGATAGCCAC-A-A 410
Query 541 CGACTATTT-CTCC--CAGAAGCCCAGCTGAAACAAGTGAGCTC-GTTGGGCAAATGACG 596
|||| ||| | || ||||||||||||||||||||||| || | |||||||||||||||
Sbjct 411 -GACTGTTTCCCCCAGCAGAAGCCCAGCTGAAACAAGTGCGC-CGGTTGGGCAAATGACG 468
Query 597 ATATTCTATAGTGGAAAAGTGAATGTGTATGATGGAATACCACCTGAAAAGGCCCGGTCA 656
|||||||||||||| ||||||||||| ||||||||| |||||||| ||||||| ||||||
Sbjct 469 ATATTCTATAGTGGCAAAGTGAATGTATATGATGGAGTACCACCTAAAAAGGCGCGGTCA 528
Query 657 ATCATGCACTTTGCAGCCAATCCAATTGATTTGCCTGAAAACGGTATTTTTGCTTCCAGT 716
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||
Sbjct 529 ATCATGCACTTTGCAGCTAATCCAATTGATTTGCCTGAAAATGGTATTTTTGCTTCTAGT 588
Query 717 AGAATGATTTCAAAGCTCATAAGTAAAGAGAAGATGATGGAACTTCCCCAAAAAGGCCTT 776
||||||||||| |||| ||| ||||||||||||||| |||| ||||||||| | ||||||
Sbjct 589 AGAATGATTTCGAAGCCCATGAGTAAAGAGAAGATGGTGGAGCTTCCCCAATATGGCCTT 648
Query 777 GAGAAGGCGAA-TTCTTCTCGTGATTCTGGTATGGAGGGCCAGGCGAACAGAAAGGTATC 835
|| ||||| || | ||||||||||||| | | ||||||| |||||||||||||| || ||
Sbjct 649 GAAAAGGC-AACTGCTTCTCGTGATTCCGATGTGGAGGGTCAGGCGAACAGAAAAGTGTC 707
Query 836 TTTGCAAAGATATCGTGAAAAGCGGAAAGACAGAAAATTCTCAAAGGCCAAAAAGTG-TC 894
||||||||||||| |||||||||||||||||||| |||||| ||| |||| ||| | ||
Sbjct 708 GTTGCAAAGATATCTTGAAAAGCGGAAAGACAGAAGATTCTCTAAGACCAAGAAG-GCTC 766
Query 895 CAGGAGTTGCGTCCTCTAGCTTGGAGATGTTTCTGAATTGTCAGCCACGGATGAAAGCTG 954
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 767 CAGGAGTTGCGTCCTCTAGCTTGGAGATGTTTCTGAATCGTCAGCCACGGATGAACGCTG 826
Query 955 CATATTCGCAAAACCT-AGGCTG-CACCGGATCTCCACTGCATAGCCAGTCACCTGAAAG 1012
||||||| |||||||| || || ||| || ||| ||| | ||||||||||||
Sbjct 827 CATATTCACAAAACCTTAG--TGGCACAGGG-CTC---TGC---G--AGTCACCTGAAAA 875
Query 1013 CCAGACAAAAAGTCCCAATCTTTCAGTTGATCTAAACAGTGA 1054
|| |||||||| |||||||| ||||||||||||||||||||
Sbjct 876 TCAAACAAAAAGCCCCAATCTCTCAGTTGATCTAAACAGTGA 917
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53783425940
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5