BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14716.1
Length=934
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493429 jgi|Araly1|493429|fgenesh2_kg.7__2862__AT4G14716.1 1262 0.0
Ahg946890 jgi|Araly1|946890|scaffold_703119.1 832 0.0
Ahg481495 jgi|Araly1|481495|fgenesh2_kg.4__555__AT2G26400.1 669 0.0
> Ahg493429 jgi|Araly1|493429|fgenesh2_kg.7__2862__AT4G14716.1
Length=820
Score = 1262 bits (683), Expect = 0.0
Identities = 777/822 (95%), Gaps = 7/822 (1%)
Strand=Plus/Plus
Query 63 CATCACGAGGAACACGATGGGTGAAGCGGTCAAGGATGGGAGAGAAGAAGTGATTCAAGC 122
||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1 CATAACGAGGAAGACGATGGGTGAAGCGGTCAAGGATGGAAGAGAAGAAGTGATTCAGGC 60
Query 123 TTGGTATATGGATGATAGTGAAGAGGATCAGAGACTTCCTCACCACAAGGATCCTAAAGA 182
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 61 TTGGTATATGGATGATAGTGAAGAGGATCAGAGACTTCCTCACCATAAGGATCCTAAAGA 120
Query 183 GTTTGTATCGTTGGACAAACTTGCAGAGCTGGGAGTACTTAGCTGGAGACTTGATGCTGA 242
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTTTGTATCTTTGGACAAACTTGCAGAGCTGGGAGTACTTAGCTGGAGACTTGATGCTGA 180
Query 243 TAACTATGAAACCGATGAGGATTTGAAAAAGATCCGTGAATCTCGTGGTTACTCTTACAT 302
|||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||
Sbjct 181 TAACTATGAAACCGATGAGGATTTGAAAAAGATCCGCGAATCCCGTGGCTACTCTTACAT 240
Query 303 GGACTTTTGTGAGGTATGCCCGGAAAAGCTTCCAAACTATGAAGTGAAAGTGAAGAGCTT 362
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 241 GGACTTTTGTGAGGTATGCCCGGAAAAGCTTCCAAACTATGAAGTGAAAGTAAAGAGCTT 300
Query 363 TTTCGAAGAACATTTACACACTGATGAGGAGATCCGTTACTGCGTTGCAGGAA-CTGGTT 421
||||||||||||||| ||||||||||| ||||||||||||||||||||||||| | ||||
Sbjct 301 TTTCGAAGAACATTTGCACACTGATGAAGAGATCCGTTACTGCGTTGCAGGAAGC-GGTT 359
Query 422 ACTTTGATGTGAGAGATCGTAATGAAGCTTGGATTAGGGTATTGGTAAAGAAGGGAGGTA 481
||||||||||||| ||||| ||||||||||||||||| |||| |||||||||||||||||
Sbjct 360 ACTTTGATGTGAGGGATCGCAATGAAGCTTGGATTAGAGTATGGGTAAAGAAGGGAGGTA 419
Query 482 TGATAGTCTTACCTGCTGGGATCTATCATCGCTTCACTGTGGACTCTGACAACTATATCA 541
||||||||||||||||||| || ||||| ||||||||||||||||| |||||||||||||
Sbjct 420 TGATAGTCTTACCTGCTGGAATATATCACCGCTTCACTGTGGACTCAGACAACTATATCA 479
Query 542 AGGCAATGCGGCTATTCGTGGGTGAACCGGTATGGACACCATACAATCGCCCACACGACC 601
||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 480 AGGCAATGCGGCTTTTCGTGGGTGAACCGGTGTGGACACCATACAATCGGCCACACGACC 539
Query 602 ATCTTCCTGCAAGGAAAGAATATGTCGATAACTTCATGATCAATGCCTCGGCTTAGAGAG 661
|||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||
Sbjct 540 ATCTTCCTGCAAGGAAAGAATACGTCGATAACTTCATGATCAACGCCTCCGCTTAGAGAG 599
Query 662 CT-TC-CTCTCTCTATATCTGGCTTTCTGAAA-CAAGGATCTATAAACAAGGCCTACAAT 718
|| || |||||||| ||||||||||||||||| || ||||||||||| ||||||||||||
Sbjct 600 CTCTCTCTCTCTCTCTATCTGGCTTTCTGAAATCA-GGATCTATAAAAAAGGCCTACAAT 658
Query 719 AAAGAAAGCTTTCCTGTCAAGTATTGGATATTTATATGTATTCCTGTGTAGAATGATGGC 778
||||||||||||||| ||||||||||||||||||||||||| | |||| |||||| | ||
Sbjct 659 AAAGAAAGCTTTCCTCTCAAGTATTGGATATTTATATGTATGCATGTGGAGAATGCTAGC 718
Query 779 TTTTGGTATGCTTGAGTTGTTGTAAACTTAGTTACACTCTCTGATATGTCTCTCTTTACC 838
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TTTTGGTATGCTTGAGGTGTTGTAAACTTAGTTACACTCTCTGATATGTCTCTCTTTACC 778
Query 839 ATCTTTGTCGTATCCCA-TATACGAAAAGATTACATTGGGAT 879
||||||||||||||| | |||||||||||| |||| ||||||
Sbjct 779 ATCTTTGTCGTATCCGAATATACGAAAAGACTACAGTGGGAT 820
> Ahg946890 jgi|Araly1|946890|scaffold_703119.1
Length=643
Score = 832 bits (450), Expect = 0.0
Identities = 528/566 (93%), Gaps = 3/566 (1%)
Strand=Plus/Plus
Query 73 AAC-ACGATGGGTGAAGCGGTCAAGGATGGGAGAGAAGAAGTGATTCAAGCTTGGTATAT 131
||| || |||||||||| ||| |||||||| |||||||| ||||| || |||||||||||
Sbjct 16 AACAACCATGGGTGAAGTGGTTAAGGATGGAAGAGAAGATGTGATCCAGGCTTGGTATAT 75
Query 132 GGATGATAGTGAAGAGGATCAGAGACTTCCTCACCACAAGGATCCTAAAGAGTTTGTATC 191
|||||| || |||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 76 GGATGACAGCGAAGAGGATCAGAGACTTCCTCACCACAAGGATCCTAAGGAGTTTCTATC 135
Query 192 GTTGGACAAACTTGCAGAGCTGGGAGTACTTAGCTGGAGACTTGATGCTGATAACTATGA 251
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 136 TTTGGATAAACTTGCAGAGCTGGGAGTACTTAGCTGGAGACTTGATGCTGATAACTACGA 195
Query 252 AACCGATGAGGATTTGAAAAAGATCCGTGAATCTCGTGGTTACTCTTACATGGACTTTTG 311
|||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 196 AACCGATGAGGAATTGAAAAAGATCCGCGAATCTCGTGGTTACTCCTACATGGACTTTTG 255
Query 312 TGAGGTATGCCCGGAAAAGCTTCCAAACTATGAAGTGAAAGTGAAGAGCTTTTTCGAAGA 371
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 256 TGAGGTATGCCCGGAAAAGCTTCCAAACTATGAAGAGAAAGTAAAGAGCTTTTTCGAAGA 315
Query 372 ACATTTACACACTGATGAGGAGATCCGTTACTGCGTTGCAGGAA-CTGGTTACTTTGATG 430
|||||| ||||||||||| ||||||||||||||||||||||||| | |||||||||||||
Sbjct 316 ACATTTGCACACTGATGAAGAGATCCGTTACTGCGTTGCAGGAAGC-GGTTACTTTGATG 374
Query 431 TGAGAGATCGTAATGAAGCTTGGATTAGGGTATTGGTAAAGAAGGGAGGTATGATAGTCT 490
|||| ||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 375 TGAGGGATCGCAATGAAGCTTGGATTAGAGTATGGGTAAAGAAGGGAGGTATGATAGTCT 434
Query 491 TACCTGCTGGGATCTATCATCGCTTCACTGTGGACTCTGACAACTATATCAAGGCAATGC 550
|||||||||| || |||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 435 TACCTGCTGGAATATATCATCGCTTCACCGTGGACTCAGACAACTATATCAAGGCAATGC 494
Query 551 GGCTATTCGTGGGTGAACCGGTATGGACACCATACAATCGCCCACACGACCATCTTCCTG 610
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 495 GGCTTTTCGTGGGTGAACCGGTGTGGACACCATACAATCGCCCACACGACCATCTCCCTG 554
Query 611 CAAGGAAAGAATATGTCGATAACTTC 636
|||||||||| || |||||||| |||
Sbjct 555 CAAGGAAAGAGTACGTCGATAATTTC 580
> Ahg481495 jgi|Araly1|481495|fgenesh2_kg.4__555__AT2G26400.1
Length=726
Score = 669 bits (362), Expect = 0.0
Identities = 506/576 (88%), Gaps = 7/576 (1%)
Strand=Plus/Plus
Query 69 GAGGAA-CACGATGGGTGAAGCGGTCAAGGATGGGAGAGAAGAAGTGATTCAAGCTTGGT 127
|||||| || |||| |||||| || | |||| |||||||||| ||||||||||||||
Sbjct 2 GAGGAATAACCATGGTTGAAGCCGTGAGGGATCAAAGAGAAGAAGCGATTCAAGCTTGGT 61
Query 128 ATATGGATGATAGTGAAGAGGATCAGAGACTTCCTCACCACAAGGATCCTAAAGAGTTTG 187
|| ||||||| | |||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 62 ATTTGGATGACAATGAAGAGGATCAGAAACTTCCTCACCACAAGGATCCTAAGGAGTTTG 121
Query 188 TATCGTTGGACAAACTTGCAGAGCTGGGAGTACTTAGCTGGAGACTTGATGCTGATAACT 247
|||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 122 TATCTTTGGACAAACTTGCAGAGCTTGGAGTACTTAGCTGGAGACTTGACGCTGATAACT 181
Query 248 ATGAAACCGATGAGGATTTGAAAAAGATCCGTGAATCTCGTGGTTACTCTTACATGGACT 307
|||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||
Sbjct 182 ATGAAACCGATGAGGAGTTGAAAAAGATCCGCGAATCTCGTGGTTACTCCTACATGGACA 241
Query 308 TTTGTGAGGTATGCCCGGAAAAGCTTCCAAACTATGAAGTGAA-AGTGAAGA-GCTTTTT 365
|||||||||| || || ||||||||||||||||||||| || ||| |||| | |||||
Sbjct 242 TTTGTGAGGTGTGTCCAAAAAAGCTTCCAAACTATGAAG-CAACAGTAAAGATG-TTTTT 299
Query 366 CGAAGAACATTTACACACTGATGAGGAGATCCGTTACTGCGTTGCAGGAACTGGTTACTT 425
| |||||||||||||| |||||| ||||| ||||||||| | ||||||| ||| |||||
Sbjct 300 TGTAGAACATTTACACATTGATGAAGAGATTCGTTACTGCCTCGCAGGAAGTGGATACTT 359
Query 426 TGATGTGAGAGATCGT-AATGAAGCTTGGATTAGGGTATTGGTAAAGAAGGGAGGTATGA 484
||||||||| |||| | ||||| | ||||||||| |||| ||||||||||||||||||||
Sbjct 360 TGATGTGAGGGATC-TCAATGATGTTTGGATTAGAGTATGGGTAAAGAAGGGAGGTATGA 418
Query 485 TAGTCTTACCTGCTGGGATCTATCATCGCTTCACTGTGGACTCTGACAACTATATCAAGG 544
||||||| |||||||| || |||||||||||||| |||||||| ||||| ||||| ||||
Sbjct 419 TAGTCTTCCCTGCTGGAATATATCATCGCTTCACCGTGGACTCAGACAATTATATGAAGG 478
Query 545 CAATGCGGCTATTCGTGGGTGAACCGGTATGGACACCATACAATCGCCCACACGACCATC 604
|||||||||| |||||||||| ||| || ||||| | ||||||||||||||||||||||
Sbjct 479 CAATGCGGCTTTTCGTGGGTGGACCAGTGTGGACTGCTTACAATCGCCCACACGACCATC 538
Query 605 TTCCTGCAAGGAAAGAATATGTCGATAACTTCATGA 640
|||||||||||| || ||| | ||||| ||| |||
Sbjct 539 TTCCTGCAAGGATAGCGTATATGGATAAATTCGTGA 574
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34653731553
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5