BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14720.1
Length=1568
Score E
Sequences producing significant alignments: (Bits) Value
Ahg890856 jgi|Araly1|890856|Al_scaffold_0007_2842 1423 0.0
Ahg493434 jgi|Araly1|493434|fgenesh2_kg.7__2867__AT4G14713.1 905 0.0
> Ahg890856 jgi|Araly1|890856|Al_scaffold_0007_2842
Length=975
Score = 1423 bits (770), Expect = 0.0
Identities = 899/958 (94%), Gaps = 22/958 (2%)
Strand=Plus/Plus
Query 142 ATGGATGTAGGAGT-TACTACGGCGAAGTCTATACTTGAGAAGCCTCTGAAGCTTCTCAC 200
|||||||| ||||| | || |||||||||||||||||||||| |||||||| || |||||
Sbjct 1 ATGGATGTTGGAGTGT-CTCCGGCGAAGTCTATACTTGAGAAACCTCTGAAACTGCTCAC 59
Query 201 TGAAGAAGACATTTCTCAGCTTACTCGCGAAGATTGCCGCAAATTCCTCAAAGAGAAAGG 260
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TGAAGAGGACATTTCTCAGCTTACTCGCGAAGATTGCCGCAAATTCCTCAAAGAGAAAGG 119
Query 261 AATGCGCAGGCCTTCGTGGAATAAATCTCAGGCGATCCAGCAAGTTTTATCTCTTAAAGC 320
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 120 AATGCGCAGGCCTTCGTGGAACAAATCTCAGGCGATCCAGCAAGTTTTATCCCTTAAAGC 179
Query 321 TCTCTATGAACCTGGAGATGATTCCGGCGCCGGAATCCTCCGCAAGATCCTTGTTTCTCA 380
||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 180 TCTCTATGAGCCTGGAGACGATTCCGGCGCCGGAATCCTCCGCAAGATCCTCGTTTCTCA 239
Query 381 GCCGCCAAATCCGCCTCGCGTTACAACAACGTTGATTGAGCCAAGGAACGAGCTCGAAGC 440
|||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 240 GCCGTCAAATCCGCCTCGCGTTTCAACAACGTTGATTGAGCCAAGCAACGAGCTCGAAGC 299
Query 441 TTGTGG-AAGGATTCCTTTACAGGAAGATGATGG-TGCGTGCCATAGAAGGGATTCTCCA 498
|||||| || |||| | | ||| ||||| || | |||||||||||||||||||||||
Sbjct 300 TTGTGGCAA-GATT-C--T---GGAGGATGACGGCT-CGTGCCATAGAAGGGATTCTCCA 351
Query 499 AGATCAGCTGAGTTTTCTGGTAGTTCTGGTCAGTTTGTTGCGGATAAAGATAGCCACAAG 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 AGATCAGCTGAGTTTTCTGGTAGTTCTGGTCAGTTTGTTGCGGATAAAGATAGCCACAAG 411
Query 559 ACTGTTTCTGTTTCCCC--CAGAAGCCCAGCTGAAACAAATGCGGTGGTTGGGCAAATGA 616
|||||||| |||| |||||||||||||||||||| |||| ||||||||||||||
Sbjct 412 ACTGTTTC-----CCCCAGCAGAAGCCCAGCTGAAACAAGTGCGCCGGTTGGGCAAATGA 466
Query 617 CGATATTTTATAGTGGCAAAGTGAATGTATATGATGGAGTACCACCTGAAAAGGCCCGGT 676
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 467 CGATATTCTATAGTGGCAAAGTGAATGTATATGATGGAGTACCACCTAAAAAGGCGCGGT 526
Query 677 CTATCATGCATTTTGCAGCCAATCCAATTGATTTGCCTGAAAATGGTATTTTTGCTTCTA 736
| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 527 CAATCATGCACTTTGCAGCTAATCCAATTGATTTGCCTGAAAATGGTATTTTTGCTTCTA 586
Query 737 GTAGAATGATTTCGAAACCCATGAGTAAAGAGAAGATGGTGGAGCTTCCCCAATATGGAC 796
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 587 GTAGAATGATTTCGAAGCCCATGAGTAAAGAGAAGATGGTGGAGCTTCCCCAATATGGCC 646
Query 797 TTGAAAAGGCACCTGCTTCTCGTGATTCTGATGTTGAGGGTCAGGCGAACAGAAAAGTAT 856
||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||| |
Sbjct 647 TTGAAAAGGCAACTGCTTCTCGTGATTCCGATGTGGAGGGTCAGGCGAACAGAAAAGTGT 706
Query 857 CGTTGCAAAGATATCTTGAAAAGCGGAAAGACAGAAGATTTTCTAAGACCAAGAAGGCTC 916
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 707 CGTTGCAAAGATATCTTGAAAAGCGGAAAGACAGAAGATTCTCTAAGACCAAGAAGGCTC 766
Query 917 CAGGAGTTGCGTCCTCTAGCTTGGAGATGTTTCTGAATCGTCAGCCACGGATGAACGCTG 976
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 767 CAGGAGTTGCGTCCTCTAGCTTGGAGATGTTTCTGAATCGTCAGCCACGGATGAACGCTG 826
Query 977 CATATTCACAAAACCTTAGTGGCACAGGGCAT-TGCGAGTCACCTGAAAATCAAACAAAA 1035
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 827 CATATTCACAAAACCTTAGTGGCACAGGGC-TCTGCGAGTCACCTGAAAATCAAACAAAA 885
Query 1036 AGTCCCAATATCTCAGTTGATCTAAACAGTGATCTAAACAGCGAAGATAATTAACAAG 1093
|| |||||| ||||||||||||||||||||||||||||||| |||| || | ||||||
Sbjct 886 AGCCCCAATCTCTCAGTTGATCTAAACAGTGATCTAAACAGTGAAGGTA-TGAACAAG 942
> Ahg493434 jgi|Araly1|493434|fgenesh2_kg.7__2867__AT4G14713.1
Length=1350
Score = 905 bits (490), Expect = 0.0
Identities = 803/945 (85%), Gaps = 57/945 (6%)
Strand=Plus/Plus
Query 138 GGATATGGATGTAGGAGTTAC-TACGGCGAAGTCTATACTTGAGAAGCCTCTGAAGCTTC 196
||| |||||||| |||||| | | |||||||||||||||||| |||||| |||||||| |
Sbjct 116 GGAGATGGATGTCGGAGTTTCGT-CGGCGAAGTCTATACTTGCGAAGCCACTGAAGCTAC 174
Query 197 TCACTGAAGAAGACATTTCTCAGCTTACTCGCGAAGATTGCCGCAAATTCCTCAAAGAGA 256
||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||| |
Sbjct 175 TCACTGAAGAAGACATTTCTCAGCTCACTCGCGAAGACTGCCGTAAATTCCTCAAAGACA 234
Query 257 AAGGAATGCGCAGGCCTTCGTGGAATAAATCTCAGGCGATCCAGCAAGTTTTATCTCTTA 316
|||||||||| |||||||| ||||| ||||||||||||||||||||||||||||| || |
Sbjct 235 AAGGAATGCGAAGGCCTTCTTGGAACAAATCTCAGGCGATCCAGCAAGTTTTATCCCTCA 294
Query 317 AAGCTCTCTATGAACCTGGAGATGATTCCGGCGCCGGAATCCTCCGCAAGATCCTTGTTT 376
||||||||| ||| || || || |||||||||||||| |||||||||||||||| ||||
Sbjct 295 AAGCTCTCTTTGAGCCCGGTGACGATTCCGGCGCCGGTATCCTCCGCAAGATCCACGTTT 354
Query 377 CTCAGCCGCCAAATCCGCCTCGCGTTACAACAACGTTGATTGAGCCAAGGAACGAGCTCG 436
|||||||| ||||||||||||||||||||||||| | |||||||| |
Sbjct 355 CTCAGCCGGCAAATCCGCCTCGCGTTACAACAAC------T---------AACGAGCTTG 399
Query 437 AAGCTTGTGGAAGGATTCCTTTACAGGAAGATGATGGTGCGTGCCATAGAAGGGATTCTC 496
|| ||||| ||| |||||| ||||||||||| || | ||||| ||| |||||||||
Sbjct 400 GAGAGTGTGGCCGGAATCCTTTTCAGGAAGATGACGGCCCATGCCACAGATGGGATTCTC 459
Query 497 CAAGATCAGCTGAGTTTTCTGGTAGTTCTGGTCAGTTTGTTGCGGATAAAGATAGCCACA 556
||| ||||||||||||||| || |||||| ||||| || ||||| ||||||
Sbjct 460 CAAAATCAGCTGAGTTTTCCGGCGGTTCTGCTCAGTATGCAGCGGAGAAAGAT------- 512
Query 557 AGACTGTTTCTGTTTCCCCCAGAAGCCCAGCTGAAACAAATGCGGTGGTTGGGCAAATGA 616
|| ||| |||||||||||||||||| | |||| ||||||||||||||
Sbjct 513 --AC-----CTG-------CAGAAGCCCAGCTGAAACGAGTGCGCTGGTTGGGCAAATGG 558
Query 617 CGATATTT-TATAGTGGCAAAGTGAATGTATATGATGGAGTACCACCTGAAAAGGCCCGG 675
|||| ||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 559 CGAT-TTTCTATAGTGGCAAAATGAATGTGTATGATGGAGTACCACCTGAAAAGGCCCGG 617
Query 676 TCTATCATGCATTTTGCAGCCAATCCAATTGATTTGCCTGAAAATGGTATTTTTGCTTCT 735
|| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 618 TCAATTATGCACTTTGCAGCCAATCCAATTGATTTGCCTGAAAATGGTATTTTTGCTTCG 677
Query 736 AGTAGAATGATTTCGAAA-CCCATGAGTAAAGAGAAGATGGTGGAGCTTCCCCAATATGG 794
|||||||||||||| ||| | ||| |||||||||||||||||||| ||||||||| ||||
Sbjct 678 AGTAGAATGATTTC-AAAGCGCATAAGTAAAGAGAAGATGGTGGAACTTCCCCAAAATGG 736
Query 795 ACTTGAAAAGGC-ACCTGCTTCTCGTGATTCTGATGTTGAGGGTCAGGCGAACAGAAAAG 853
||||| ||||| | | |||||||| ||||||| | |||||||||||||||||||| |
Sbjct 737 CCTTGAGAAGGCGA-ATTTTTCTCGTGTTTCTGATATGGAGGGTCAGGCGAACAGAAAGG 795
Query 854 TATCGTTGCAAAGATATCTTGAAAAGCGGAAAGACAGAAGATTTTCTAAGACCAAGAAG- 912
| || ||||||||||||| |||||||||||||||||||| ||| || ||| |||| |||
Sbjct 796 TGTCTTTGCAAAGATATCGTGAAAAGCGGAAAGACAGAAAATTCTCAAAGGCCAAAAAGT 855
Query 913 GCTCCAGGAGTTGCGTCCTCTAGCTTGGAGATGTTTCTGAATCGTCAGCCACGGATGAAC 972
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 856 G-TCCAGGAGTTGCGTCCTCTAGCTTGGAGATGTTTCTGAATCGTCAGCCACGGATGAAC 914
Query 973 GCTGCATATTCACAAAACCTTAG-TGGCACAGGG---C-ATTGC---G--AGTCACCTGA 1022
||||||||||||||||||||| | || |||||| | | ||| | ||||||||||
Sbjct 915 GCTGCATATTCACAAAACCTTGGCTG-CACAGGATTTCCACTGCAAAGCGAGTCACCTGA 973
Query 1023 AAATCAAACAAAAAGTCCCAATATCTCAGTTGATCTAAACAGTGA 1067
||| || ||||||||||||||| | ||||||||||||||||||||
Sbjct 974 AAACCAGACAAAAAGTCCCAATCTTTCAGTTGATCTAAACAGTGA 1018
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58735157790
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5