BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14723.1
Length=744
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493427 jgi|Araly1|493427|fgenesh2_kg.7__2860__AT4G14723.1 1151 0.0
> Ahg493427 jgi|Araly1|493427|fgenesh2_kg.7__2860__AT4G14723.1
Length=745
Score = 1151 bits (623), Expect = 0.0
Identities = 711/751 (95%), Gaps = 15/751 (2%)
Strand=Plus/Plus
Query 3 AAAGAAAACAAAAACAAGACATAGCAATTTGAATTTAATATTTGGATTCCAAATCCAAGC 62
||| |||| ||||| |||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1 AAAAAAAAAAAAAAAAAGAGATAGCAATTTGAATTTAATACTTGGATTCCAAATCCAAGC 60
Query 63 TCATGGGTCTATTCTACTGTTCACAGTCACACACACA--CTCTCTATCTAAGCTTCTTTT 120
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 TCATGGGTCTATTCTACTGTTCACAGTCACACACACACTCTCTCTATCTAAGCTTCTTTT 120
Query 121 GACTTAAGACCAAAATGAATaaccccaaacctcaaacactcaaacataaacccaaaaaat 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 121 GACTTAAGACCAAAATGAATAACCCCAAACCCCAAACACTCAAACATAAACCCAAAAAAT 180
Query 181 ctctctcacagagaaaaataaaacacacaaTTTTAACCACAACACTTGTCTCTCTGCTAA 240
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 181 CTCTCTCACAGAGAAAAATAAAACACACCATTTTAACCACAACACTTGTCTCTCTGCTAA 240
Query 241 CATACGCATCCTCT-CCGGTTCTTGACTAATGGGCACCTTCCGT---CGCCGCCGTCGCT 296
| |||||||||| | |||||||||||||||||||| |||||||| |||||||||| ||
Sbjct 241 CGTACGCATCCT-TGCCGGTTCTTGACTAATGGGCGCCTTCCGTCGCCGCCGCCGTCACT 299
Query 297 TTCTTTTAGCTGCACTCGTCACATTTGCTCTCCTCCACCTCTTCTCCGCCTCCTCCATAG 356
||||||||||| |||||| | ||||||||||||||||||||||||||||||||| | |||
Sbjct 300 TTCTTTTAGCTTCACTCGCCGCATTTGCTCTCCTCCACCTCTTCTCCGCCTCCTTCGTAG 359
Query 357 TCTCCGCCGATGGTAGATGGATTGGTCAGAGAACCGGGTCGGATTTACCGGGTGGGTTCA 416
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TCTCCGCCGATGGTAGATGGATTGGTCAGAGAACCGGGTCGGATTTACCGGGTGGGTTCG 419
Query 417 TAAGGAG--TAATAAGCGGTTTGGTGGTCCGGGTTCATCACCACCGACGTGTAGATCGAA 474
| |||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 420 T--GGAGAATAATAAGAGGTTTGGTGGTCCGGGTTCATCACCACCGACGTGCAGATCGAA 477
Query 475 GTGTGGGAAATGTCAGCCGTGTAAACCGGTTCACGTACCAATTCAACCCGGTTTAAGTAT 534
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 478 GTGTGGGAAATGTCAGCCGTGTAAACCGGTTCACGTACCGATTCAACCCGGTTTAAGTAT 537
Query 535 GCCATTGGAGTATTACCCTGAAGCTTGGCGGTGCAAGTGTGGCAACAAGCTCTTCATGCC 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GCCATTGGAGTATTACCCTGAAGCTTGGCGGTGCAAGTGTGGCAACAAGCTCTTCATGCC 597
Query 595 CTAAAGTTTGATCAATTATTAAACAATTCA-GAAGAAGaaaaaaaaTGTTTTAATTCttt 653
||||| |||||||||| ||||||||||||| | ||| ||||||| ||||||||||||||
Sbjct 598 CTAAACTTTGATCAATGATTAAACAATTCACG--GAA-AAAAAAAGTGTTTTAATTCTTT 654
Query 654 ttgttttgttttttGTTCCTCATTTCTTGTGCTTCTCTGATTAATTATTGTAATGAAAAC 713
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 655 TTGTTTTGTTTTTTGTTCCTCATTTCTTGTGCTTGTCTGATTAATTATTGTAATGAAATC 714
Query 714 TATATGTTAATATTAAAAAATTGGTCATGTG 744
||||||||||||| |||||||||||||||||
Sbjct 715 TATATGTTAATATAAAAAAATTGGTCATGTG 745
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27410377323
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5