BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14730.1
Length=838
Score E
Sequences producing significant alignments: (Bits) Value
Ahg355323 jgi|Araly1|355323|fgenesh1_pg.C_scaffold_7002496 691 0.0
> Ahg355323 jgi|Araly1|355323|fgenesh1_pg.C_scaffold_7002496
Length=750
Score = 691 bits (374), Expect = 0.0
Identities = 437/468 (93%), Gaps = 2/468 (0%)
Strand=Plus/Plus
Query 297 TGTTGTGGCCTCTGTTGGCTTTTGAGAAGAAGCATCCGATAAACTGCATTGTCCTGTCCA 356
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 275 TGTTGTGGCCTCTGTTGGCTTTTGAGAAGAAGCATCCCATAAACTGCATTGTCCTGTCCA 334
Query 357 TCTTCACTCTCTCCATTTCCTTCTCTGTGGGGATTTGCTGCTCTCTCTCCCAAGGGAGGA 416
||||||| ||||||||||||||| |||| ||||||||||||||||||||| |||||||||
Sbjct 335 TCTTCACGCTCTCCATTTCCTTCGCTGTTGGGATTTGCTGCTCTCTCTCCAAAGGGAGGA 394
Query 417 TTGTTCTGGAGGCTGCAATTCTCACAGCTGTGATGGTCTTT-GGTCTAACGATCTACACC 475
|||||||||||||||||||||||||| |||||||||||||| ||| | || |||||||||
Sbjct 395 TTGTTCTGGAGGCTGCAATTCTCACATCTGTGATGGTCTTTGGGT-TGACAATCTACACC 453
Query 476 TTCTGGGCAGTGAAGAGAGGACATGATTTCTCCTTCCTTGGACCATTCCTCTTTGGTGCT 535
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 454 TTCTGGGCAGTGAAGAGAGGACATGATTTCTCCTTCCTTGGACCATTCCTCTTTGGTGCA 513
Query 536 CTCCTCATTATCCTTGTCTTCACCCTTTTGCAGATATTCCACCCTCTGGGGAAGCTATCA 595
|||||||||||||| | |||||| |||||||||||||| |||||||| |||||||||||
Sbjct 514 CTCCTCATTATCCTCGCCTTCACTCTTTTGCAGATATTTCACCCTCTCGGGAAGCTATCT 573
Query 596 TCGATGATATTCAGCGGAATAGCTTCAATAGTGTTCTGCGGATACATCATCTTCGACACC 655
|||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||
Sbjct 574 TCGATGATATTCAGCGGAATAGCTTCGATCGTGTTCTGCGGATACATCATCTTTGACACA 633
Query 656 AATCAGCTGATCAAGAAACTCAACTACGACGAATATATCACTGCAGCGATTCGTCTATAC 715
|| ||||| ||||||||||||||||||||||| |||||| |||| |||||||||||||||
Sbjct 634 AACCAGCTTATCAAGAAACTCAACTACGACGAGTATATCCCTGCCGCGATTCGTCTATAC 693
Query 716 CTCGACGTTATGAATCTCTTCCTCAGTCTCCTCGGCATTATAAGCAAC 763
||||| ||||||||||||||||||| ||||||||||| || ||||||
Sbjct 694 CTCGATGTTATGAATCTCTTCCTCAACCTCCTCGGCATCATGAGCAAC 741
Score = 346 bits (187), Expect = 2e-94
Identities = 225/243 (93%), Gaps = 3/243 (1%)
Strand=Plus/Plus
Query 59 ATGGCGAAATCTGACATTGAAACTGGTGGTGGTAACGAGCTGTATCCGGGAATGAAAGAG 118
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGGCGAAATCTGACATTGAAACTGGTGGTGGTAACGAGCTTTATCCGGGAATGAAAGAG 60
Query 119 AGCTCGGAGCTTCGTTGGGCTTTCATAAGAAAACTTTACAGCATTTTGTCTCTTCAGTTG 178
||||| ||||||||||||||||||||||| ||| ||||||||||| ||||||||||| ||
Sbjct 61 AGCTCTGAGCTTCGTTGGGCTTTCATAAGGAAAGTTTACAGCATTCTGTCTCTTCAGATG 120
Query 179 CTTGTCACCGTCGGAGTCTCCGC-CGTTGTTTACTTCGTCCGTCCGATCCCCGAGTTCAT 237
|| ||||||||||||||||||| | |||||||||||||||||||||| || ||||||||
Sbjct 121 CTCCTCACCGTCGGAGTCTCCGCTC-TTGTTTACTTCGTCCGTCCGATTCCTGAGTTCAT 179
Query 238 CACCGAGACTCACCGTGGCCTTGCCGTCTTTTTCGTCAtcctcctccttcctctcctcct 297
||| ||||||||||||||||| ||||||||||||||||||||| | |||||| ||||||
Sbjct 180 CACTGAGACTCACCGTGGCCTCGCCGTCTTTTTCGTCATCCTCATTCTTCCTTTCCTCC- 238
Query 298 GTT 300
|||
Sbjct 239 GTT 241
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30993931521
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5