BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14740.1
Length=1788
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493425 jgi|Araly1|493425|fgenesh2_kg.7__2858__AT4G14740.1 2503 0.0
Ahg930275 jgi|Araly1|930275|scaffold_302732.1 1014 0.0
> Ahg493425 jgi|Araly1|493425|fgenesh2_kg.7__2858__AT4G14740.1
Length=1661
Score = 2503 bits (1355), Expect = 0.0
Identities = 1587/1693 (94%), Gaps = 39/1693 (2%)
Strand=Plus/Plus
Query 65 ctctctctttctTTCAAAATGGAAAAACTCATGGTTCCGACATGGAGACCCGACCCGGTT 124
|||||||| ||| | ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1 CTCTCTCTCTCTCTGAAAATGGAAAAACCCATGGTTCCGACATGGAGACCCGACCCGGTT 60
Query 125 TACCGTCCACCGGAAACACCACTCGAACCGATGGAGTTTTTAGCTCGTTCATGGAGCGTC 184
|||||||||||||| ||||||||||| || |||||||| |||||||| ||||||||||||
Sbjct 61 TACCGTCCACCGGAGACACCACTCGAGCCTATGGAGTTCTTAGCTCGGTCATGGAGCGTC 120
Query 185 TCTGCTCTCGAAGTCTCCAAGGCTCTAACACCACCCAACCCTCAGATTCTCCTCTCCAAA 244
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 121 TCTGCTCTCGAAGTCTCCAAGGCTCTAACACCACCTAACCCTCAGATTCTCCTCTCCAAA 180
Query 245 ACCgaagaagaagaagaagaagaaCCCATCTCCTCTGTCGTAGACGGCGACGGCGACACG 304
||| |||||||||||||||||||||| | | | ||||||||| |||||||||||
Sbjct 181 ACC------GAAGAAGAAGAAGAACCCATCT-C-C-GCCGTAGACGGTGACGGCGACACA 231
Query 305 GAAGACACCGGACTTGTCACCGGAAACCCATTCTCCTTCGCTTGTTCAGAAACTTCTCAA 364
|||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||
Sbjct 232 GAAGACACCGGACTTGTCACCGGAAACCCATTCTCCTTTGCTTGTTCTGAAACATCTCAA 291
Query 365 ATGGTCATGGATCGTATCTTGTCTCACTCTCAAGAAGTATCACCAAGAACATCTGGTCGG 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 ATGGTCATGGATCGTATCTTGTCTCACTCTCAAGAAGTATCACCAAGAACATCTGGTCGG 351
Query 425 CTATCTCACAGTAGTGGTCCACTTAATGGTTCTTTGACCGACAGTCCTCCTGTGTCTCCT 484
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 352 CTATCTCACAGTAGTGGTCCACTTAACGGTTCTTTGACCGACAGTCCTCCTGTGTCTCCT 411
Query 485 CCCGAATCCGACGACATTAAGCAATTTTGCAGAGCGAACAAAAATTCATTGAACAGTGTA 544
||||||||||||||||||||||||||||||||||| ||||| |||||| |||||| | ||
Sbjct 412 CCCGAATCCGACGACATTAAGCAATTTTGCAGAGCAAACAACAATTCACTGAACAATATA 471
Query 545 AATTCTCAGTTCCGTTCAACGGCGGCAACTCCGGGACCTATAACCGCTACAGCTACACAG 604
|||| |||||||||| |||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 472 AATTATCAGTTCCGTACAACGGCGACAACTCCGGGACCTATAACCGCCACAGCTACACAG 531
Query 605 TCCAAGACGGTGGGACGGTGGCTTAAGGACCGGAGAGAGAAAAAGAAAGAGGAGACTCGG 664
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 532 TCCAAGACGGTGGGACGGTGGCTTAAGGATCGGAGAGAGAAGAAGAAAGAGGAGACTCGG 591
Query 665 GCTCATAACGCTCAGATTCACGCTGCTGTCTCTGTCGCCGGCGTTGCTGCAGCTGTTGCT 724
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 592 GCTCATAATGCTCAGATTCACGCTGCTGTCTCTGTAGCCGGCGTTGCTGCAGCTGTTGCT 651
Query 725 GCTATTGCAGCAGCCACCGCTGCGTCTTCTAGCTGTGGTAAGGATGAGCAGATGGCTAAA 784
|| || |||||||| || |||||||||||||| || || |||||||||||||||||||||
Sbjct 652 GCCATCGCAGCAGCTACGGCTGCGTCTTCTAGTTGCGGCAAGGATGAGCAGATGGCTAAA 711
Query 785 ACTGACATGGCCGTTGCTTCTGCTGCGACCCTTGTGGCTGCTCAGTGTGTGGAAGCTGCT 844
||||||||||| |||||||| ||||||||||||||||| |||||||||||||| ||||||
Sbjct 712 ACTGACATGGCGGTTGCTTCCGCTGCGACCCTTGTGGCAGCTCAGTGTGTGGAGGCTGCT 771
Query 845 GAAGTTATGGGAGCTGAGAGAGAGTATTTGGCTTCTGTTGTTAGCTCCGCCGTCAATGTT 904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 GAAGTTATGGGAGCTGAGAGAGAGTATTTGGCTTCTGTTGTTAGCTCCGCCGTCAATGTT 831
Query 905 CGTTCTGCCGGAGATATTATGACTCTCACCGCCGGAGCAGCTACAGCTTTAAGAGGAGTG 964
|| ||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 CGCTCTGCTGGAGACATCATGACTCTCACCGCCGGAGCAGCTACAGCTTTAAGAGGAGTG 891
Query 965 CAAACATTGAAGGCAAGGGCAATGAAGGAAGTGTGGAACATAGCATCAGTGATACCAATG 1024
||||||||||| || |||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 892 CAAACATTGAAAGCGAGGGCAATGAAGGAAGTGTGGAACATTGCATCAGTGATTCCAATG 951
Query 1025 GATAAAGGACTCACTTCTACAGGAGGAAGCAGCAATAATGTTAATGGTAGCAATGGAAGC 1084
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 952 GATAAAGGACTCACTTCCACTGGAGGAAGCAGCAATAATGTTAATGGTAGCAATGGAAGT 1011
Query 1085 TCAAGCAGTAGTCACAGTGGTGAACTTGTACAACAGGAGAATTTCTTGGGAACTTGTAGT 1144
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 TCAAGCAGTAGTCACAGTGGTGAACTTGTACAACAGGAGAATTTCTTGGGAACTTGTAGC 1071
Query 1145 AGAGAATGGCTCGCTAGAGGTTGTGAACTCCTCAAACGCACTCGCAAAGGTGATCTCCAC 1204
|||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1072 CGAGAATGGCTCGCTAGAGGTTGCGAACTCCTCAAACGAACTCGCAAAGGTGATCTCCAC 1131
Query 1205 TGGAAGATAGTATCTGTTTACATCAACAAAATGAATCAGGTTATGTTGAAGATGAAGAGC 1264
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1132 TGGAAGATAGTATCTGTTTACATCAACAAGATGAATCAGGTTATGTTGAAGATGAAGAGC 1191
Query 1265 AGGCATGTTGGAGGAACCTTCACCAAGAAGAAAAAGAACATTGTGCTTGATGTGATCAAG 1324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1192 AGGCATGTTGGAGGAACCTTCACCAAGAAGAAAAAGAACATTGTGCTTGATGTGATCAAG 1251
Query 1325 AATGTCCCGGCCTGGCCTGGACGACATTTGCTAGAGGGAGGAGATGATCTAAGATACTTC 1384
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1252 AATGTCCCGGCCTGGCCTGGACGACATTTGCTAGAGGGAGGAGATGATCTTAGATACTTC 1311
Query 1385 GGTTTGAAGACGGTTATGCGAGGTGATGTTGAATTCGAGGTCAAGAGCCAAAGGGAATAT 1444
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1312 GGTTTGAAGACGGTTATGCGAGGTGATGTTGAATTCGAGGTCAAGAGCCAAAGGGAGTAT 1371
Query 1445 GAAATGTGGACACAAGGTGTCTCAAGGCTTCTTGTTCTTGCTGCTGAGAGGAAGTTTAGG 1504
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1372 GAAATGTGGACACAAGGTGTGTCAAGGCTTCTTGTTCTTGCTGCTGAGAGGAAGTTTAGG 1431
Query 1505 ATGTGAATAAAC--GTTCAATGGCTGCTTGGTTTAAGTGTGAGtttttttttAACTTATG 1562
||||||||||| |||||||||||||||| |||||||||||||||| | ||||||||
Sbjct 1432 ATGTGAATAAATATGTTCAATGGCTGCTTGTTTTAAGTGTGAGTTTTAT---AACTTATG 1488
Query 1563 TGGTCAAATTTCATTAGTAGGGGTTCTTTTAAGGTAATGGTTTTTTGGGTTGGGTATAGG 1622
|||||| ||| | | ||| | || | ||||||||||||||||||||||
Sbjct 1489 TGGTCA--TTT--T-A--AGG--T------AA--T---GGTTTTTTGGGTTGGGTATAGG 1528
Query 1623 ATAAAATGGACCTACCAGTCAAGGTGAGG-AAGCATTTGGGTAAACAAAACTTAGTGGGG 1681
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 1529 ATAAAATGGACCTACCAGTCAAGGTGAGGGAAGGATTTGGGTAAACAAAACTTAGTGGGG 1588
Query 1682 GTG---ATCTGTAATATCTATGTTCTTAGtttttt-tttGGTTGTTGGTGGTCTTTTTGT 1737
||| ||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 1589 GTGGTGATCTGTAATTTCTATGTTCTTAGTTTTTTGTTTTGTTGTTGGTGGTCTTTTTGT 1648
Query 1738 ATaaaaaaaCAAA 1750
||||||||| |||
Sbjct 1649 ATAAAAAAAAAAA 1661
> Ahg930275 jgi|Araly1|930275|scaffold_302732.1
Length=1471
Score = 1014 bits (549), Expect = 0.0
Identities = 1175/1469 (80%), Gaps = 75/1469 (5%)
Strand=Plus/Plus
Query 65 ctctctctttctTTCAAAATGGAAAAACTCA-TGGTTCCGA-CATGGAGACCCGACCCGG 122
|||||||| ||| | ||||||||||||| || || |||| | ||||| | |||||||
Sbjct 3 CTCTCTCTCTCTGTAAAAATGGAAAAAC-CAGTGCTTCC-ACCATGGCGTTCCGACCCAA 60
Query 123 TTTACCGTCCACCGGAAACACCACTCGAACCGATGGAGTTTTTAGCTCGTTCATGGAGCG 182
||| ||| |||||||| |||||| | || |||||||||||| | |||| || ||||| |
Sbjct 61 TTTTCCGGCCACCGGAGACACCATTAGAGCCGATGGAGTTTCTCTCTCGCTCTTGGAGTG 120
Query 183 TCTCTGCTCTCGAAGTCTCCAAGGCTCTAACACC-AC-C--C-AA-CC-CTC--AG-ATT 232
| || |||| |||||||||||| ||||| || || | | | || || ||| || ||
Sbjct 121 TTTCAGCTCACGAAGTCTCCAAAGCTCTCACTCCTTCTCAGCAAATCCTCTCTAAGAATA 180
Query 233 C--TCCTCTCCAAAACCgaaga-agaagaagaagaagaaCCCATCTCCTCTGTCGTAGAC 289
| || || |||| | ||||||||| |||||||| || | | || ||||
Sbjct 181 CAATCGAAAGCACCACCG-TCATTCTCGAAGAAGAACAACCCATCACCGCCGGCG-AGAC 238
Query 290 GGCGACGGCGACACGGAAGACACCGGACTT-GTCACCGGAAACCCATTCTCCTTCGCTTG 348
| || | | | || ||| | | | ||| ||| |||||||||| ||||||||||||||
Sbjct 239 TGAAAC-G-G--A-GG-AGA-A-CAG-CTTCGTCTCCGGAAACCCTTTCTCCTTCGCTTG 289
Query 349 TTCAGAAACTTCTCAAATGGTCATGGATCGTATCTTGTCTCACTCTCAAGAAGTATCACC 408
|| ||||||||||| |||||||||||||||||||||||||| ||||| ||||| || ||
Sbjct 290 CTCCGAAACTTCTCAGATGGTCATGGATCGTATCTTGTCTCAGTCTCAGGAAGTGTCGCC 349
Query 409 AAGAACATCTGGTCGGCTATCTCACAGTAGTGGTCCACTTAATGGTTCTTTGACCGACAG 468
| |||||||||||||||| ||||| || || ||||| || ||||||||||| ||||||||
Sbjct 350 ACGAACATCTGGTCGGCTTTCTCATAGCAGCGGTCCTCTCAATGGTTCTTTAACCGACAG 409
Query 469 TCCTCCTG-TGTCTCCTCCCGAA-TCCGACGACATTAAGCAATTTTGCAGAGCGAACAAA 526
|||||| | | || || | ||| | |||||||||||||||||||| | ||| | |
Sbjct 410 TCCTCC-GATTTCACCGCATGAAGT-CGACGACATTAAGCAATTTT---G-TCGATC--A 461
Query 527 AATTCATTGAACAGTGTAAATTCTCAGTTCCGTTCAACGGCG-GCAACTCCGGGACCTAT 585
|| || | ||| | | || ||||| ||||||||||||| | ||||||||||||||||
Sbjct 462 AA--CAAT-AAC--T-TCAACTCTCAATTCCGTTCAACGG-GAACAACTCCGGGACCTAT 514
Query 586 AACCGCTACAGCTACACAGTCCAAGACGGTGGGACGGTGGCTT-AAGGACCGGAGAGAGA 644
||| || ||| | ||||||||||||||||| ||||||||| || || |||||||| ||||
Sbjct 515 AACGGCAACAACCACACAGTCCAAGACGGTTGGACGGTGG-TTGAAAGACCGGAGGGAGA 573
Query 645 AAAAGAAAGAGGAGACTCGGGCTCATAACGCTCAGATTCACGCTGCTGTCTCTGTCGCCG 704
||||||| || |||||| |||| || || |||||||| || |||||||| || || || |
Sbjct 574 AAAAGAAGGAAGAGACTAGGGCACACAATGCTCAGATACATGCTGCTGTATCCGTTGCTG 633
Query 705 GCGTTGCTGCAGCTGTTGCTGCTATTGCAGCAGCCACCGCTGCGTCTTCTAGCTGTGGTA 764
| || || || || || |||||||| || || || |||||||| || || |||| ||| |
Sbjct 634 GTGTGGCAGCTGCGGTGGCTGCTATCGCGGCTGCAACCGCTGCTTCGTCGAGCTCTGGGA 693
Query 765 AGGATGAGCAGATGGCTAAAACTGACATGGCCGTTGCTTCTGCTGCGACCCTTGTGGCTG 824
| |||||| | ||||||||||| || ||||| || ||||||||||| || ||||||||||
Sbjct 694 AAGATGAGAATATGGCTAAAACGGATATGGCTGTGGCTTCTGCTGCAACACTTGTGGCTG 753
Query 825 CTCAGTGTGTGGAAGCTGCTGAAGTTATGGGAGCTGAGAGAGAGT-ATTTGGCTTCTGTT 883
|||| |||||||| |||||||||||||||||||||||||| || | |||| |||||||||
Sbjct 754 CTCAATGTGTGGAGGCTGCTGAAGTTATGGGAGCTGAGAGGGA-TCATTTAGCTTCTGTT 812
Query 884 GTTAGCTCCGCCGTCAATGTTCGTTCTGCCGGAGATATTATGAC-TCTCACCGCCGGAGC 942
||||| || || || |||||||| || ||||||||||| ||||| | | || || |||||
Sbjct 813 GTTAGTTCTGCTGTTAATGTTCGATCCGCCGGAGATATCATGACAT-TAACTGCTGGAGC 871
Query 943 AGCTACAGCTTTAAGAGGAGT-GCAAACATTGAAGGCAAGGGCAATGAAGGAAGTGTGGA 1001
||||||||| ||||||||||| || ||||||||||| ||||| |||||||| |||||||
Sbjct 872 AGCTACAGCGTTAAGAGGAGTGGC-TACATTGAAGGCGAGGGCGATGAAGGAGGTGTGGA 930
Query 1002 ACATAGCATCAGTGATACCAATGGATAAAGGACTCACTTCTACAGGAGGAAGCAGCAA-- 1059
|||| |||||||| || ||||||||||||||| ||| || | ||||| |||||||
Sbjct 931 ACATTGCATCAGTTATTCCAATGGATAAAGGAATCA-ATC--CCGGAGGTTGCAGCAATG 987
Query 1060 -TAAT-GT-----TAATGGTAGCAATGGAAGCTCAAGCAGTAGTCACAGTGGTGAACTTG 1112
|||| || |||||||||||||| ||||||||||| ||||||||||| ||| ||
Sbjct 988 TTAATGGTAACGGTAATGGTAGCAATGTCAGCTCAAGCAGCAGTCACAGTGGCGAATTTC 1047
Query 1113 TACAACAGGAGAATTTCTTGGGAAC-TTGTAGTAGAGAATGGCTCGCTAGAGGTTGTGAA 1171
|| |||| ||||||||||| || ||| | ||||||||||| ||| ||||| | |
Sbjct 1048 TAGTTGAGGATAATTTCTTGGG-ACATTGCAACAGAGAATGGCTTGCTCGAGGTGGCCAG 1106
Query 1172 CTCCTCAAACGCACTCGCAAAGGTGATCTCCACTGGAAGATAGTATCTGTTTACATCAAC 1231
|| || ||||| || |||||||||||||| || ||||| ||||| ||||||||||| ||
Sbjct 1107 CTTCTTAAACGTACCCGCAAAGGTGATCTTCATTGGAAAATAGTTTCTGTTTACATAAAT 1166
Query 1232 AAAATGAATCAGGTTATGTTGAAGATGAAGAGCAGGCATGTTGGAGGAACCTTCACCAAG 1291
| | ||||| ||||| ||||||||||||||||||||||| ||||| |||||||| |||
Sbjct 1167 AGGCTAAATCAAGTTATATTGAAGATGAAGAGCAGGCATGTAGGAGGGACCTTCACAAAG 1226
Query 1292 AAGAA-AAAGAACATTGTGCTTGATGTGATCAAGAATGTCCCGGCCTGGCCTGGACGACA 1350
||||| ||| || ||||| ||||||||||||| || | ||||| ||||| || || ||
Sbjct 1227 AAGAACAAA-AATGTTGTGATTGATGTGATCAAAAACATTCCGGCTTGGCCAGGCCGCCA 1285
Query 1351 TTTGCTAGAGGGAGGAGATGATCTAAGATACTTCGGTTTGAAGACGGTTATGCGAGGTGA 1410
|||||| || |||||||| ||| | |||||||| || || ||||||||| |||||| ||
Sbjct 1286 TTTGCTGGAAGGAGGAGAGGATTTGAGATACTTTGGGTTAAAGACGGTTCCGCGAGG-GA 1344
Query 1411 -TGTTGAATTCGAGGT-CAAGAGCCAAAGGGAATATGAAATGTGGACACAAGGTGTCTCA 1468
||| ||||| || || |||||| || || || |||||||||||||||||||||||||||
Sbjct 1345 TTGTAGAATTTGA-GTGCAAGAGTCAGAGAGAGTATGAAATGTGGACACAAGGTGTCTCA 1403
Query 1469 AGGCTTCTTGTTCTTGCTGCTGAGAGGAA 1497
|||||||||| | ||||||| ||||||||
Sbjct 1404 AGGCTTCTTGCTGTTGCTGCCGAGAGGAA 1432
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67115011690
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5