BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14750.1
Length=1516
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493422 jgi|Araly1|493422|fgenesh2_kg.7__2855__AT4G14750.1 1890 0.0
Ahg333544 jgi|Araly1|333544|fgenesh1_pg.C_scaffold_1000109 91.6 2e-17
> Ahg493422 jgi|Araly1|493422|fgenesh2_kg.7__2855__AT4G14750.1
Length=1310
Score = 1890 bits (1023), Expect = 0.0
Identities = 1182/1255 (94%), Gaps = 26/1255 (2%)
Strand=Plus/Plus
Query 1 ACACACATATAACAATCTCTTCTTCTCTGACATTACACAATGGTGGTTTGAG-TTTACAG 59
||||||| || ||||||||||||||||||||||||||||||||||| |||| ||| ||
Sbjct 1 ACACACACATTACAATCTCTTCTTCTCTGACATTACACAATGGTGG--TGAGCTTTTCAA 58
Query 60 AAGA-TAATAATGGGGAAAACTAGCAAATGGTTTCGAAGTCTCTTAACCGGAAAGAAAGA 118
|||| ||||||||||||||| ||||||||| |||||||| | |||||||||||||||||
Sbjct 59 AAGACAAATAATGGGGAAAACAAGCAAATGGATTCGAAGTTTGTTAACCGGAAAGAAAGA 118
Query 119 GAGAACAAAGGAACATATCATTCAAAGCGAGTGTGTATTCACTTCTTCCATTCCAGGCAC 178
|||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||
Sbjct 119 GAGAACAAAGGAACATATTATTCAAAGCGAGTGTGGATTCACTTCCTCCATTCCAGGCAC 178
Query 179 TCCTAAGGAGAAACGTCGATGGAGTTTTCGACGTTCTTCAGCAACTGGACCACCGCCACC 238
|||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 179 TCCTAAAGAGAAACGTCGATGGAGTTTTCGACGTTCTTCAGCCACTGGACCA---CCACC 235
Query 239 AGCTTGTGCTATTACAC-TGAAAGATTcaccaccaccgccgccaccaccacctccacctc 297
||||||||||||||| | | ||||||||||| ||| ||| |||||| |||||||
Sbjct 236 AGCTTGTGCTATTAC-CTTAAAAGATTCACCGCCA---CCG---CCACCA---CCACCTC 285
Query 298 caccGCTACAACAACCATTTGTGGTCGAAATCGTGGACAATGAAGATGAACAAATCAAGA 357
|||||| || ||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 286 CACCGCAACCACAACCATTAGTGGTCGCAATCGTGGACAATGAAGATGAACAAATCAAGA 345
Query 358 ACGTTTCA-GCTGAAGAGATTGAAGAATTTGCAGCAATAAAGATTCAAGCGTGCTATCGT 416
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 346 ACGTTTCAGGC-GAAGAGATTGAAGAATTTGCAGCAATAAAGATTCAAGCGTGCTATCGT 404
Query 417 TCTCATTTGGCGAGGAAAGCATTAAGAGCATTAAAAGGGTTAGTGAAATTACAAGCACTA 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 405 TCTCATTTGGCGAGGAAAGCATTAAGAGCATTAAAAGGGTTAGTGAAATTACAAGCACTA 464
Query 477 GTGAGAGGTCATTTAGTAAGGAAACAAGCAACAGCTACACTTAGATGTATGCAAGCATTA 536
||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||
Sbjct 465 GTGAGAGGTCATTTAGTGAGGAAACAAGCAACAACAACACTTAGATGTATGCAAGCATTA 524
Query 537 ATAACACTTCAAGCCAAAGCTCGAGAACAGAGGATTCGTATGATCGGAGGAGATTCAACA 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 525 ATAACACTTCAAGCCAAAGCTCGAGAACAGAGGATTCGTATGATCGGAGGAGATTCAACA 584
Query 597 AATCCAAGAACATCGATTCACAAAACCAGGATCAATAACTTTTACCACGAGAATGAAGAA 656
||||||||||||||||||||||||||| | ||||||||| ||||||| ||||||||||||
Sbjct 585 AATCCAAGAACATCGATTCACAAAACCCGAATCAATAACCTTTACCAAGAGAATGAAGAA 644
Query 657 AACATCAAGATTGTGGAAATGGACATTCAATCGAAAATGTACTCTCCGGCTCCTTCGGCT 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 645 AACATCAAGATTGTGGAAATGGACATTCAATCGAAAATGTACTCTCCGGCTCCTTCGGCT 704
Query 717 TTAACCGAGATGAGTCCTCGCGCGTATAGTAGCCATTTCGAGGATTGTAACTCATTCAAC 776
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 705 TTAACCGAGATGAGTCCTCGCGCATATAGTAGCCATTTCGAGGATTGTAACTCTTTCAAC 764
Query 777 ACAGCTCAAAGTAGTCCACAATGTTTCAGCAGATTCAAAGAGTATTACAATGGAGATACT 836
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 765 ATAGCTCAAAGTAGTCCTCAATGTTTCAGCAGATTCAAAGAGTATTACAATGGAGATACT 824
Query 837 TTGTCTTCTTATGATTACCCTCTCTTCCCTAATTACATGGCTAATACTCAGTCTTCTAAA 896
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 825 TTGTCTTCTTATGATTACCCTCTCTTCCCAAATTACATGGCTAATACTCAGTCTTCTAAA 884
Query 897 GCCAAGGCTCGGTCTCAAAGTGCGCCGAAGCAGAGACCTCCTGAGATCTATGAGAAGCAG 956
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 885 GCCAAGGCTCGGTCTCAAAGTGCGCCGAAGCAGAGACCTCCTGAGATCTATGAGAAACAG 944
Query 957 ATGAGTGGGAGGAGAAGATCTTCGATGGAAGCACCGAGGAATAACGGTGTCCCGAGAGCT 1016
||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||
Sbjct 945 ATGAGTGGGAGGAGAAGATCTTCAATGGAAGCACCAAGGAACAACGGTGTCCCGAGAGCT 1004
Query 1017 GTAAGGATGCAGAGATCTTCATCTCAACTAGGGTCAAACACAGCCAAGGAAAGTCAACAA 1076
||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 1005 GTACGGATGCAGAGATCTTCATCTCAATTAGGGTCAAATACAGCCAAGGAAAGTCAACAA 1064
Query 1077 CATCA---TCATCATCAGTACTATCCGTGGATGGCGATAAAGCTCGATAGATCTAATATT 1133
||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1065 CATCAGCATCATCATCAGTATTATCCGTGGATGGCGATTAAGCTCGATAGATCTAATATA 1124
Query 1134 TCGCTTATGGAGAGCGAATGCGGATCTACAAGTACCGTTATGACTAATACCAACTACGGT 1193
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1125 TCGCTTATGGAGAGCGAATGCGGATCTACTAGTACCGTTATGACTAATACCAACTACGGT 1184
Query 1194 AGACATGTTGATGTTCAGGGAAACAACAACATGTACTGAACACTGTGCTTTAGAA 1248
||||||||||||||||||||||||| || ||||||||| ||| || |||||||
Sbjct 1185 AGACATGTTGATGTTCAGGGAAACAGCA---TGTACTGAAAACTATGATTTAGAA 1236
> Ahg333544 jgi|Araly1|333544|fgenesh1_pg.C_scaffold_1000109
Length=1584
Score = 91.6 bits (49), Expect = 2e-17
Identities = 96/117 (82%), Gaps = 10/117 (9%)
Strand=Plus/Plus
Query 421 ATTTGGCGAGGAA-AGCATTAAGAGCATTAAAAGGGTTAGTGAAATTACAAGCACTAGTG 479
||||||| | ||| |||||||||||||||||||||||||||||| |||||||| | |||
Sbjct 401 ATTTGGC-AAGAAGAGCATTAAGAGCATTAAAAGGGTTAGTGAAGCTACAAGCATTGGTG 459
Query 480 AGAGGTCATT-TAGTAAGGAAACAAGC-AACA-GCTACACTTA-GATGTATGCAAGC 532
|| |||||| | || || |||||||| || | | ||| ||| | |||||||||||
Sbjct 460 AGGGGTCATAAT-GTGAGAAAACAAGCCAAAATG--ACA-TTAAGGTGTATGCAAGC 512
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56754465050
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5