BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14770.1
Length=2177
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493420 jgi|Araly1|493420|fgenesh2_kg.7__2853__AT4G14770.1 1598 0.0
Ahg930271 jgi|Araly1|930271|scaffold_302728.1 527 1e-148
Ahg479789 jgi|Araly1|479789|fgenesh2_kg.3__2490__AT3G22780.1 501 8e-141
> Ahg493420 jgi|Araly1|493420|fgenesh2_kg.7__2853__AT4G14770.1
Length=2103
Score = 1598 bits (865), Expect = 0.0
Identities = 967/1016 (95%), Gaps = 7/1016 (1%)
Strand=Plus/Plus
Query 1161 TTACTGTGAATGCTTTGCTGCTGGAGTCTATTGCATAGAGCCATGTTCATGTATAGACTG 1220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1092 TTACTGTGAATGCTTTGCTGCTGGAGTCTATTGCATAGAGCCATGTTCATGTATAGACTG 1151
Query 1221 CTTCAATAAACCTATCCATGAAGACGTTGTCCTGGCGACTCGCAAACAGATTGAATCTCG 1280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1152 CTTCAATAAACCTATCCATGAAGACGTTGTCCTGGCGACTCGCAAACAGATTGAATCTCG 1211
Query 1281 GAATCCACTTGCATTTGCTCCTAAAGTCATTAGGAACTCTGACTCAGTTCAAGAAACCGG 1340
|||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||
Sbjct 1212 GAATCCACTTGCATTTGCTCCTAAAGTCATTAGGAACTCTGAGTCGGTTCTAGAAACCGG 1271
Query 1341 GGATGATGCAAGCAAAACTCCAGCTTCTGCGCGCCATAAACGTGGCTGCAACTGCAAGAA 1400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1272 GGATGATGCAAGCAAAACTCCAGCTTCTGCGCGCCATAAACGTGGCTGCAACTGCAAGAA 1331
Query 1401 ATCAAACTGTCTGAAGAAATACTGTGAATGCTATCAGGGTGGTGTGGGCTGTTCCATAAA 1460
|||||||||| |||| ||||| || ||||||||||||||||| |||||||||||||||||
Sbjct 1332 ATCAAACTGTTTGAAAAAATATTGCGAATGCTATCAGGGTGGGGTGGGCTGTTCCATAAA 1391
Query 1461 CTGTAGATGTGAAGGATGTAAGAACGCATTCGGCCGGAAAGATGGGTCTTCCATTGACAT 1520
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1392 CTGTAGATGTGAAGGATGTAAGAACGCATTTGGCCGCAAAGATGGGTCTTCCATTGACAT 1451
Query 1521 GGAAGCCGAACAAGAAGAGGAAAATGAAACATCTGAGAAAAGCAGAACAGCCAAAAGCC- 1579
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1452 GGAAGCAGAACAAGAGGAGGAAAATGAAACATCTGAGAAAAGCAGAACAGCCAAA-GCCC 1510
Query 1580 AACAAAACACTGAGGTTTTAATGAGAAAGGACATGAGTTCTGCTCTACCTACGACACCAA 1639
|||| |||| ||||||||||||||||||||| ||| || | |||||||||||||||||
Sbjct 1511 AACAGAACATTGAGGTTTTAATGAGAAAGGAGGCGAGGTCCGATCTACCTACGACACCAA 1570
Query 1640 CGCCGATTTACAGACCAGAACTGGTTCAACTACCTTTCTCATCATCTAAGAACAGGATGC 1699
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1571 CGCCGATTTACAGACCAGAACTGGTTCAACTACCTTTCTCATCATCTAAGAATAGAATGC 1630
Query 1700 CTCCTCCACAGTCTCTTCTTGGAGGTGGATCTTCCTCAGGGATATTTAACAGTCAATATC 1759
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1631 CTCCTCCACAGTCTCTTCTTGGAGGTGGATCTTCCTCAGGGATATTCAACAGTCAATATT 1690
Query 1760 TAAGAAAACCAGACATTAGTTTGTCTCAATCCAGAATCGAGAAGTCATTCGAGACAGTCG 1819
|||||||||||||||| |||||| |||||||| | ||| ||||||||||||||||||| |
Sbjct 1691 TAAGAAAACCAGACATAAGTTTGACTCAATCCCGGATCAAGAAGTCATTCGAGACAGTTG 1750
Query 1820 CAGTTGATGGAGCTGAACAAATGCCTGAGATTCTCATCCATTCCCCTATACCTAACATCA 1879
||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 1751 CAGAGGATGGAGCTGAAGAAATGCCTGAGATTCTCATCCACTCCCCTATACCTAACATCA 1810
Query 1880 AGAGTGTCTCTCCCAACGG-AAAGAGGGTCTCTCCTCCTCATATGGAATCATCTAGCTCA 1938
||||||||||||||||||| ||| |||||||| |||||||||||||| ||||||||||||
Sbjct 1811 AGAGTGTCTCTCCCAACGGCAAA-AGGGTCTCCCCTCCTCATATGGAGTCATCTAGCTCA 1869
Query 1939 GGCTCAATCTTAGGGAGAAGAAATGGCGGGCGGAAACTGATATTGCAGTCGATTCCATCG 1998
|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1870 GGGTCAATCTTAGGGAGAAGAAGTGGCGGGCGGAAACTGATATTGCAGTCGATTCCATCG 1929
Query 1999 TTTCCTTCTCTCACTCCCCAACACTGAAAGCATTTGGTGTTGTGTAGCTAAGGAAATTCT 2058
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1930 TTTCCTTCTCTCACTCCCCAACACTGAAAGCATTTGGTGTTGTGTAGCTATGGAAATTCT 1989
Query 2059 TTGAATCTTTTTCAAGGTGAAAGATGATATAA-GTCAACTTCTAGTTGGTAGTAAGTTAG 2117
|||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1990 TTGAATTTTTTTCAAGGTGAAAGATGATA-AATGTCAACTTCTAGTTGGTAGTAAGTTAG 2048
Query 2118 CACTTAGCACACTTTTAAATCTGTAGTCTAGTCGTTGTGTAATAAAGATGTCAATC 2173
||||||||||||||| || ||||||||||||| |||||||||||||||||||||||
Sbjct 2049 CACTTAGCACACTTT-AAGTCTGTAGTCTAGTGGTTGTGTAATAAAGATGTCAATC 2103
Score = 1297 bits (702), Expect = 0.0
Identities = 989/1118 (88%), Gaps = 57/1118 (5%)
Strand=Plus/Plus
Query 1 ATGGATACCCCTCAGAAGAGTATTACTCAGATCGGAACTCCAATTTCCAAATCCAGATTC 60
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGATACCCCTCAGAAGAGTGTTACTCAGATCGGAACTCCAATTTCCAAATCCAGATTT 60
Query 61 GAGGATTCTCCAGTGTTCAATTACATAAACAGTTTGTCTCCAATAAGACCAGTCAGATCC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 GAGGATTCTCCAGTGTTCAATTACATAAACAGTTTGTCTCCAATAAGACCAGTTAGATCC 120
Query 121 ATACCAAATCCTAACCAATTTAGCTCTCTGAATTTCACTTCCCCTCCCTCTGTTTTCACT 180
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 121 ATACCAAATCCTAACCAATTTAGCGCTCTGAATTTCACTTCTCCTCCCTCTGTTTTCACT 180
Query 181 TCACCTCACCTAACTTCTTCTCACAAAGAATC-CAGATTCTTCAAAACTCACAACTCTTC 239
||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 181 TCACCACACCTAACTTCTTCTCACAAAGAATCTC-GATTCTTCAAAACTCACAACTCTTC 239
Query 240 TTCTTCTGATCCTACCAATTCCGTTGAATCTCAAGAAGACGAGTCTACTTCTCATGAAGA 299
||||||||||||||||||| |||||||||||| |||||| |||||||||||| |||||||
Sbjct 240 TTCTTCTGATCCTACCAATCCCGTTGAATCTCGAGAAGATGAGTCTACTTCTTATGAAGA 299
Query 300 AGTTCCAGCAGAAGGAGAAGA---TACAAAAGGTCTTAACATAGATGATTGCATGCGAGA 356
||| ||||||||||||||| |||||||| ||| || |||||| || |||||||||
Sbjct 300 TGTTGTAGCAGAAGGAGAAGAAGATACAAAAGATCTCAATATAGATTCTTCCATGCGAGA 359
Query 357 AGAAGCTTCAGTTGAAACGAATCTTGATGATTCCGTTGCTTCACCGTGTGGTGGAAATAC 416
||||| | || | |||| ||||||||| ||| ||||||| ||||||||| ||||
Sbjct 360 AGAAG----A----AA-CAAATCGTGATGATTCTGTTTCTTCACCTTGTGGTGGAGATAC 410
Query 417 TACTGATCTTTCGCTTGTTCCTTACGCTCCTACTCGAGGAGAGGATGGTTCTTGTGAGGA 476
||| ||||||||||||||||| ||||||||| || ||||||| ||||| ||| |||| |
Sbjct 411 TACCGATCTTTCGCTTGTTCCATACGCTCCT-CT--AGGAGAGAATGGTACTTCTGAGAA 467
Query 477 TA-ATGGAATGGAGCTGCAGAAGATGCATGATAATGTTCAGGGGAAAACTGAAACTCCGG 535
| | |||||||||||||||||| || |||||||||||||||||||||| ||||||||||
Sbjct 468 TGCA-GGAATGGAGCTGCAGAAGGTGTATGATAATGTTCAGGGGAAAACCGAAACTCCGG 526
Query 536 ATTGGGAAAGTTTGATTGCAGATGCTTCTGAGCTGTTAATCTTTGACTCACCTGATGCTT 595
||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||| |
Sbjct 527 ATTGGGAAAGTTTGATTTCAGATGCTTCTGAGCTGTTGATCTTCGACTCACCTGATGCAT 586
Query 596 CTGAGGCTTTTAGATGCTTTATGATGCAGAGAGCATCAAACTCTGAAGCACGTTTTAGAA 655
| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 587 CAGAGGCTTTTAGATGTTTTATGATGCAGAGAGCATCAAACTCTGAAGCACGTTTTAGCA 646
Query 656 ATGGTGTGGAGAAGCAAACAATGCAGCACGATTCAAACAAGGAACCGGAGTCCGCGAATG 715
||||||| ||| |||||||||||||| |||||||||||||||||| ||||| || |||
Sbjct 647 ATGGTGTTGAGGTGCAAACAATGCAGCCCGATTCAAACAAGGAACCACAGTCCTCGGATG 706
Query 716 CGATTCCTTATGAGG--C--T--G---T----T-TCA--CTCTTGCAC-C--G--T-G-G 752
||||||||||||||| | | | | | ||| || || ||| | | | | |
Sbjct 707 CGATTCCTTATGAGGTACACTCAGGAATAACATCTCAAGCTGTTTCACTCTTGCATCGCG 766
Query 753 -TATAAGAAGACGTTGTCTTGACTTTGAGATGCCCGGGAA-TAAGCAAACATCAAGTGAG 810
|||||||||||| || ||||||||||||||||| ||||| ||||||||| | || |
Sbjct 767 GTATAAGAAGACGCTGCCTTGACTTTGAGATGCC-GGGAAATAAGCAAAC-T-AAC--A- 820
Query 811 AATAACACCGCGGCTTGTGAATCCTCTTCGAGATGTGTTGTACCGAGTATTGGTCTTCAT 870
| | |||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 821 A-T------GCGGCTTGTGAATCTTCATCGAGATGTGTTGTACCGAGTATTGGTCTTCAT 873
Query 871 CTAAATGCCATTTTAATGTCTTCAAAGGACTGTAAAACCAATGTTACTCAAGATTACTCA 930
||||| |||||||||||||| |||||||||||||||| |||||| | ||| |||||||||
Sbjct 874 CTAAACGCCATTTTAATGTCCTCAAAGGACTGTAAAAGCAATGTCAGTCATGATTACTCA 933
Query 931 TGTTCTGCGAATATACAAGTGGGTTTACAAAGGTCCATCTCTACACTGCAAGATTCTTTG 990
||||||| ||| |||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 934 TGTTCTGGGAAGATACAAGTGGGTTTACAAAGCTCCATCTCTACACTGCAAGAAACTTTG 993
Query 991 GACCAAACAGAAAATGAAATCCGGGAAGATGCAGATCAAGATGTTCCTGTTGAACCAGCT 1050
||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||
Sbjct 994 GACCAAACAGAAAATGAAACCCGGGAAGATGCAGATCAAGATGTCCCCGTTGAACCAGCC 1053
Query 1051 TTGCAAGAGTTAAATTTGAGCAGCCCTAAGAAGAAGAG 1088
||||||||||||||||||||||||||||||||||||||
Sbjct 1054 TTGCAAGAGTTAAATTTGAGCAGCCCTAAGAAGAAGAG 1091
> Ahg930271 jgi|Araly1|930271|scaffold_302728.1
Length=1915
Score = 527 bits (285), Expect = 1e-148
Identities = 763/976 (78%), Gaps = 103/976 (11%)
Strand=Plus/Plus
Query 1072 AGCCCTAAGAAGAAGAGG-GTTAAGT-TG--GATTCTGGAGAAGGCGAG---TCGTGTAA 1124
||||| |||||||| ||| | ||||| | | || |||||||||||| || |||||
Sbjct 980 AGCCCCAAGAAGAAAAGGCG-TAAGTCCGAACAATCAGGAGAAGGCGAGTCCTCATGTAA 1038
Query 1125 GCGATGCAACTGCAAAAAGTCCAAGTGTTTGAAACTTTACTGTGAATGCTTTGCTGCTGG 1184
|| || ||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1039 ACGGTGTAACTGCAAAAAATCCAAGTGTTTGAAGCTTTACTGTGAATGCTTTGCTGCTGG 1098
Query 1185 AGTCTATTGCATAGAGCCATGTTCATGTATAGACTGCTTCAATAAACCTATCCATGAAGA 1244
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1099 AGTTTATTGCATAGAGCCATGTTCATGTATAGATTGCTTCAATAAACCTATCCATGAAGA 1158
Query 1245 CGTTGTCCTGGCGACTCGCAAACAGATTGAATCTCGGAATCCACTTGCATTTGCTCCTAA 1304
|||||||||||| ||||| |||||||||||||| || ||||| |||||||||||||||||
Sbjct 1159 CGTTGTCCTGGCTACTCGTAAACAGATTGAATCCCGCAATCCGCTTGCATTTGCTCCTAA 1218
Query 1305 AGTCATTAGGAACTCTGACT-CAGTTCA-AGAAACCGGGGATGATGCAAGCAAAACTCCA 1362
|||||| || ||||| || | || ||| ||| || || ||||||||||||||||||
Sbjct 1219 AGTCATCAGAAACTCGGATTCCA--TCATTGAAGTTGGTGAGGATGCAAGCAAAACTCCA 1276
Query 1363 GCTTCTGCGCGCCATAAACGTGGCTGCAACTGCAAGAAATCAAACTGTCTGAAGAAATAC 1422
||||| ||||| || ||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1277 GCTTCAGCGCGACACAAACGAGGCTGTAACTGCAAGAAATCAAACTGTCTGAAGAAATAC 1336
Query 1423 TGTGAATGCTATCAGGGTGGTGTGGGCTGTTCCATAAACTGTAGATGTGAAGGATGTAAG 1482
||||||||||||||||| || || |||||||| ||||||||||||||||||||||||||
Sbjct 1337 TGTGAATGCTATCAGGGCGGAGTTGGCTGTTCTATAAACTGTAGATGTGAAGGATGTAAA 1396
Query 1483 AACGCATTCGGCCGGAAAGATGGGTCTTCCATTGACATGGAAGCCGAACAAGAAGAGGAA 1542
|| ||||| ||| | ||||||||||||| | | | | |||||||| ||||||
Sbjct 1397 AATGCATTTGGCAGAAAAGATGGGTCTT---T-GT--T-----C-GAACAAGATGAGGAA 1444
Query 1543 AATGAAACATCTGAG-AAAAGCAGAACAGCCAAAAGC-CAACAAAACA-CTGAGGTTTTA 1599
|| |||||||||| | |||||| ||||| | |||| | ||||| || | ||| || |
Sbjct 1445 AACGAAACATCTG-GCAAAAGCGGAACAACGAAAA-CACAACAGAATGTC-GAG-TTGT- 1499
Query 1600 ATGAGAAAGGACATGAGTTCTGCTCTACCTACGACACCAACGCCGATTTACAGACCAGAA 1659
| | | | || |||||| |||| | ||||||| ||| || | |||| | |
Sbjct 1500 -TCA-ATC---C-TG----CTGCTCAACCTTCAACACCAATGCCAAT--A-AGACAACCA 1546
Query 1660 CTGGTTCAACTACCTTTCTCATCATCTAAGAACAGGA-TGCCT-CCTCCACAGTCTC-TT 1716
|||| |||||| || ||||||| | || ||||| | ||| | ||||||||||||| ||
Sbjct 1547 CTGGCTCAACTTCCACTCTCATC--C-AACAACAG-ACTGC-TACCTCCACAGTCTCATT 1601
Query 1717 --C-T--TGGAGGT---GGATC-T-T-CCTCAGGGATATTTAACAGTCAATATCTAAGAA 1765
| | ||||| | ||||| | | |||||||||||| | || || | | | |||
Sbjct 1602 TTCATCATGGAGCTATTGGATCATCTTCCTCAGGGATAT--A-CAA-CA-T--C-A-GAA 1652
Query 1766 AACCAGACATTAGTTTGTCTCAATCCAGAATCGAGAAGTCATTCGAGACAGTCGCAGTTG 1825
|||||||||| ||||||| | || | | || || | ||| |||||| || ||| |
Sbjct 1653 AACCAGACATGAGTTTGT-TG--TC-ACATTCAAG--G--ATT-GAGACAATCACAGAAG 1703
Query 1826 ATGGAGCTGAACAAATG-CCTGAGATTCTCATCCATTCCCCTATACCTAACATCAAGAGT 1884
|| | ||| | ||| || |||| ||| |||||||| || ||| |||||||||| |||
Sbjct 1704 ATATTGATGATGATATGTCC-GAGAATCTAATCCATTCTCCAATAGCTAACATCAATAGT 1762
Query 1885 GTCTCTCCCAACGG-AAAGAGGGTCTCTCCTC-CTCATATGGAATCATCT-AGCTCAGGC 1941
| ||||||||| | ||| ||||| ||| | ||||| | || ||||| || || | |
Sbjct 1763 CTATCTCCCAACAGCAAA-AGGGTTTCTT-TGGCTCATCTTGATTCATCAGAG-TC-GTC 1818
Query 1942 TCAATCTTAGGGAGAAGAAATGGCGGGC-GGAAACTGATATTGCAGT-CGATTCCATCGT 1999
|| || || ||||||| ||| || | |||| |||||| | || || ||||| |||
Sbjct 1819 TCCAT----GG-AGAAGAACTGGTGG-CAGGAATCTGATA---C-GTTCGTTTCCAACGT 1868
Query 2000 TTCCTTCTCTCACTCC 2015
||||||||||||||||
Sbjct 1869 TTCCTTCTCTCACTCC 1884
> Ahg479789 jgi|Araly1|479789|fgenesh2_kg.3__2490__AT3G22780.1
Length=2378
Score = 501 bits (271), Expect = 8e-141
Identities = 732/942 (78%), Gaps = 81/942 (9%)
Strand=Plus/Plus
Query 1103 CTGGAGAAGGCGAGTCGTGTAAGCGATGCAACTGCAAAAAGTCCAAGTGTTTGAAACTTT 1162
||||||| || ||||| |||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1278 CTGGAGAGGGTGAGTCATGTAAGCGATGCAACTGCAAAAAGTCAAAGTGTTTGAAGCTTT 1337
Query 1163 ACTGTGAATGCTTTGCTGCTGGAGTCTATTGCATAGAGCCATGTTCATGTATAGACTGCT 1222
|||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||
Sbjct 1338 ACTGTGAATGCTTTGCTGCTGGGGTTTATTGCATAGAGCCATGTTCATGTATAGATTGCT 1397
Query 1223 TCAATAAACCTATCCATGAAGACGTTGTCCTGGCGACTCGCAAACAGATTGAATCTCGGA 1282
|||| ||||||||||||||||| ||| |||| || ||||||||||||||||| || |
Sbjct 1398 TCAACAAACCTATCCATGAAGAAACTGTTTTGGCTACCCGCAAACAGATTGAATCCCGAA 1457
Query 1283 ATCCACTTGCATTTGCTCCTAAAGTCATTAGGAA-CTCTGACTCAGTTCA-AGAAACCGG 1340
|||||||||||||||||||||||||||| | ||| | | || || | ||| ||| | ||
Sbjct 1458 ATCCACTTGCATTTGCTCCTAAAGTCATCA-GAAGCGCAGATTCCG-TCATGGAAGCTGG 1515
Query 1341 GGATGATGCAAGCAAAACTCCAGCTTCTGCGCGCCATAAACGTGGCTGCAACTGCAAGAA 1400
||||||||||| ||||| ||||||||||| || || ||||| |||||||||||||||||
Sbjct 1516 TGATGATGCAAGTAAAACCCCAGCTTCTGCACGACACAAACGCGGCTGCAACTGCAAGAA 1575
Query 1401 ATCAAACTGTCTGAAGAAATACTGTGAATGCTATCAGGGTGGTGTGGGCTGTTCCATAAA 1460
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||
Sbjct 1576 ATCAAACTGTCTGAAGAAATACTGTGAATGCTATCAGGGTGGAGTCGGCTGTTCCATGAA 1635
Query 1461 CTGTAGATGTGAAGGATGT-AAGAACGCATTCGGCCGGAAAGATGGGTCTTC-CATTG-- 1516
|||||||||||||||||| || || | ||||||| | ||||| ||||||| | |||
Sbjct 1636 CTGTAGATGTGAAGGATGCCAA-AATGTATTCGGCAGAAAAGAAGGGTCTTTAC-TTGTT 1693
Query 1517 A-CATGGA-AGCCGAACAAGAAGAGGAAAATGAAACATCTGAGAAAAGCAGAACAGCCAA 1574
| |||||| ||| ||| ||| ||||| | || |||| ||||||||| | | ||| ||
Sbjct 1694 ATCATGGAGAGCA-AACTAGAGGAGGATCAGGAGACATATGAGAAAAG-A-AT-AGCAAA 1749
Query 1575 AAGCCAACAAAACACTGAGGTTTT-AATGA-GAA-AG--GA-CATGAGTTCTGCTCTACC 1628
|| ||||| |||| ||| || | || || | || || | ||||||| || |||
Sbjct 1750 AATTCAACACAACATTGAAGTGTCGAAAGAAGTGGAGCAGAACCCAAGTTCTGATCAACC 1809
Query 1629 TACGACACCAAC-GCCGATT-TACAGACCAGAAC-TGGTTCAACTA-CCTTTCTCATCAT 1684
| |||||||| | ||| | ||||||| | ||||||| | | || |||| | |
Sbjct 1810 TTCGACACCA-CTGCC-ACCGTACAGAC-ATTTGGTGGTTCATC-AGCCATTCT--TG-T 1862
Query 1685 CTAAGAACAGGA-TGCCTCCTCCACAGTCTCTTCTTGG-AGGTGGATCTTCCTCAGGGAT 1742
|||||||||| | ||||||| | |||| | ||||||| | | || |||||||| |
Sbjct 1863 CTAAGAACAG-ACTGCCTCCGACGCAGTTTTTTCTTGGCACG-GGTTCTTCCTC-----T 1915
Query 1743 ATTTAACAGTCAATATCTAAGAAAACCAGACATTAGTTTGTCTCAATC-CAGAATC-GA- 1799
|| ||| || | | ||||| | | ||||| | ||||| |||||| ||
Sbjct 1916 -TT---CAG--AA-A---A------CCAGATAGTGGTTTGACACAATCACAGAATGAGAA 1959
Query 1800 GAAG--TCATTCGAGACAGTCGCAGTTGATGGAGCTGA-ACAAATGCCTGAGATTCTCAT 1856
|||| || || || || || || | || | | || | | |||||||||||||| |
Sbjct 1960 GAAGCCTC-TT-GAAACTGTGGCTGAAGACAAAACAGAGATTA-TGCCTGAGATTCTCCT 2016
Query 1857 CCATTCCCCTATACCTAACATCAAGAGTG-TCTCTCCCAACGGAAAGAGGGTCTCTCCTC 1915
| ||||||||||| ||||||||||| | |||| |||||| | ||||| |||||||| |
Sbjct 2017 CAATTCCCCTATAGCTAACATCAAG-GCCATCTCCCCCAACAGCAAGAGAGTCTCTCCCC 2075
Query 1916 CTCATAT--GGAATCATCTAGC-TCAGGCTCAATCTTAGGGAGAAGA---AATGGCGGGC 1969
|||| | || || || || || ||||||||| || |||| ||| |||||| |
Sbjct 2076 CTCA-ACCCGGC-TCCTC-AGAATCGGGCTCAATCCTAAGGAGGAGAGGTAATGGC---C 2129
Query 1970 GGAAACTGATATTGCAGTCGATTCCATCGTTTCCTTCTCTCA 2011
|||| |||||| | | ||| |||||| | |||||||||||||
Sbjct 2130 GGAAGCTGATACTACGGTCTATTCCAGCATTTCCTTCTCTCA 2171
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81932116995
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5