BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14780.1
Length=1363
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946872 jgi|Araly1|946872|scaffold_703101.1 1766 0.0
> Ahg946872 jgi|Araly1|946872|scaffold_703101.1
Length=1141
Score = 1766 bits (956), Expect = 0.0
Identities = 1086/1148 (95%), Gaps = 12/1148 (1%)
Strand=Plus/Plus
Query 132 GTTTTGATTTGAAAAGATTTTAAGTA-ATGGAGAAGAAATCAGAAGAAGATGGGAACAAC 190
||||||||||| |||| ||||||| | ||||||||||||||||||||||| |||||||||
Sbjct 1 GTTTTGATTTG-AAAG-TTTTAAG-ACATGGAGAAGAAATCAGAAGAAGAGGGGAACAAC 57
Query 191 A-CGACGAAAGAAAAGATCTTTAGAGCGGATAAGATTGATTTGAAGAGTTTAGATAGACA 249
| | | |||||| ||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 58 ATC-AAGAAAGAGAAGATCTTTCGAGCTGATAAGATTGATTTGAAGAGTTTAGATAGACA 116
Query 250 GCTTGAGAAACATCTGAGTAGGGTTTGGTCGAGGAACCTTGAGGTGAATCCTAAAGCTAA 309
||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 117 GCTTGAGAAACATTTGAGTAGGGTTTGGTCGAGGAATCTTGAGGTGAATCTTAAAGCTAA 176
Query 310 GGAAGAATGGGAGATTGATTTGGCTAAGCTT-GAAACAAGTAATGTTATTGCTCGTGGTA 368
|||||||||||| ||||||||||||||| || | ||||||||||||||||||||||||||
Sbjct 177 GGAAGAATGGGATATTGATTTGGCTAAG-TTGGCAACAAGTAATGTTATTGCTCGTGGTA 235
Query 369 CTTATGGTACTGTCTACAAAGGCATTTATGATGGACAAGATGTTGCAGTGAAGGTGCTTG 428
|||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||
Sbjct 236 CTTATGGTACTGTCTACAAAGGTACTTATGATGGACAAGATGTTGCAGTGAAAGTGCTTG 295
Query 429 ATTGGGAAGATGATGGGAATGAAACAACGGCCAAGACCGCTACAAATCGAGCTTTGTTCC 488
|||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||
Sbjct 296 ATTGGGAAGATGATGGGAATGAAACAACGGCCAAGACCACTACAAATCGGGCTCTGTTCC 355
Query 489 GTCAAGAGGTCACTGTTTGGCACAAACTCAACCATCCAAATGTCACAAAGTTTGTTGGAG 548
|||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 356 GTCAGGAAGTCACTGTTTGGCACAAACTCAACCATCCGGATGTCACAAAGTTTGTTGGAG 415
Query 549 CGTCGATGGGAACAACGAATCTTAATATACGATCAGCTGATTCGAA-AGGCTCGTTGCCT 607
|||| ||||||||||||||||| |||||||||||||||||||| || |||||||||||||
Sbjct 416 CGTCTATGGGAACAACGAATCTGAATATACGATCAGCTGATTC-AAGAGGCTCGTTGCCT 474
Query 608 CAACAAGCATGTTGTGTGGTTGTGGAATATCTTCCTGGTGGAACATTGAAACAACACTTG 667
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 475 CAACAAGCGTGTTGTGTGGTTGTGGAGTATCTTCCTGGTGGAACATTGAAACAACACTTG 534
Query 668 ATTCGTCATAAGAGCAAGAAACTCGCTTTTAAAGCCGTTATCAAACTCGCTCTTGATCTC 727
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 535 ATTCGTCATAAGAGCAAGAAACTCGCTTTTAAAGCTGTCATCAAACTCGCTCTTGATCTC 594
Query 728 GC-CAGAGGGCTAAGCTATTTGCACTCAGAGAAGATTGTCCACCGCGATGTGAAAACAGA 786
|| | | |||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 595 GCGC-GGGGGCTATGCTATTTGCACTCAGAGAAGATTGTGCACCGCGATGTGAAAACAGA 653
Query 787 GAACATGCTTTTGGATGCTCAGAAGAATTTGAAAATAGCGGATTTTGGAGTAGCACGAGT 846
||| ||||||||||||||| | |||||||||||||||||||||||||||||||| || ||
Sbjct 654 GAATATGCTTTTGGATGCTAATAAGAATTTGAAAATAGCGGATTTTGGAGTAGCGCGGGT 713
Query 847 GGAAGCTCTTAATCCAAAAGACATGACAGGAGAAACCGGTACTCTTGGATACATGGCTCC 906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 GGAAGCTCTTAATCCAAAAGACATGACAGGAGAAACCGGTACTCTTGGATACATGGCTCC 773
Query 907 TGAGGTCATTGATGGTAAGCCATACAACAGAAGGTGCGATGTTTACAGCTTTGGGATATG 966
|||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 774 TGAGGTCATTGACGGTAAGCCTTACAATAGAAGGTGCGATGTTTACAGCTTTGGGATATG 833
Query 967 TTTATGGGAAATCTACTGCTGCGATATGCCTTATCCTGATCTTAGCTTTGTCGATGTTTC 1026
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 CTTATGGGAAATCTACTGCTGCGATATGCCTTATCCTGATCTTAGCTTTGTCGATGTTTC 893
Query 1027 TTCCGCGGTTGTCTTACATAATCTGAGACCGGAGATACCGAGATGCTGTCCGACTGCATT 1086
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 894 TTCCGCGGTTGTCTTACATAATCTGAGACCGGATATACCGAGATGCTGTCCGACTGCATT 953
Query 1087 GGCGGGCATAATGAAGACATGTTGGGATGGGAATCCGCAGAAACGGCCGGAGATGAAGGA 1146
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 GGCGACCATAATGAAGACATGTTGGGATGGGAATCCGCAGAAACGGCCGGAGATGAAGGA 1013
Query 1147 GGTGGTGAAAATGCTTGAAGGTGTTGATACCAGTAAAGGTGGCGGAATGATACCGGAAGA 1206
|||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 1014 AGTGGTGAAGATGCTTGAAGGTATTGATACCAGTAAAGGCGGCGGAATGATACCGGAAGA 1073
Query 1207 TCAAAGTCGGGGCTGTTTCTGCTTTGCTCCTGCTCGTGGACCTTAAATTTCCCTTTCTAC 1266
||| |||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 1074 TCAGAGTCCGGGCTGTTTCTGCTTTGCTCCGGCTCGTGGACCTTGAATTTCCCTTTCTAC 1133
Query 1267 CTCTGTTT 1274
|||| |||
Sbjct 1134 CTCTTTTT 1141
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51008462946
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5