BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14785.1
Length=288
Score E
Sequences producing significant alignments: (Bits) Value
Ahg330033 jgi|Araly1|330033|fgenesh1_pm.C_scaffold_7002260 398 1e-110
> Ahg330033 jgi|Araly1|330033|fgenesh1_pm.C_scaffold_7002260
Length=291
Score = 398 bits (215), Expect = 1e-110
Identities = 262/285 (92%), Gaps = 2/285 (1%)
Strand=Plus/Plus
Query 1 ATGAGGTGTACTACTTTGATTATGGTTTCTTTTGTTGTCAGCTGTTTGCTTCTAAGCCTT 60
|||| ||||||||||||| ||||||||||||||||| ||| || |||| ||||||||| |
Sbjct 1 ATGAAGTGTACTACTTTGGTTATGGTTTCTTTTGTTTTCATCTTTTTGATTCTAAGCCAT 60
Query 61 GTTGAAGAATCGGAAGCTGGAGCACCTCCCGTAGAGTGTTGGAGTGAGATCCTATTTTCT 120
|||||||| |||||||||||||||||||||||||| ||||||| |||||| |||||| ||
Sbjct 61 GTTGAAGAGTCGGAAGCTGGAGCACCTCCCGTAGACTGTTGGACTGAGATTCTATTTCCT 120
Query 121 GGAAAATGCGGGTTTCATGGAAAGAAGAAATGCTACAAAGAAATGGAATCTAAGCTAAAA 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGAAAATGCGGTTTTCATGGAAAGAAGAAATGCTACAAAGAAATGGAATCTAAGCTAAAA 180
Query 181 CAACGTGTTCTTAAATGTAGATGTGAGGATGTTAAAAA-AGATTCCAATACATCTAAGGA 239
|||||||||||| ||||| |||||||||||| ||||| |||| |||| ||| |||||||
Sbjct 181 CAACGTGTTCTTCAATGTTCATGTGAGGATGT-AAAAACAGATCCCAAAACACCTAAGGA 239
Query 240 CGAACATTACTGCGGATGTCAAAGAGAAAATCCCTATGAGTGTAA 284
| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 240 CCAACATTACTGCGGTTGTCAAAGAGAAAATCCCTATGAGTGTAA 284
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10073075496
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5