BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14790.1
Length=2359
Score E
Sequences producing significant alignments: (Bits) Value
Ahg890839 jgi|Araly1|890839|Al_scaffold_0007_2825 2750 0.0
> Ahg890839 jgi|Araly1|890839|Al_scaffold_0007_2825
Length=1710
Score = 2750 bits (1489), Expect = 0.0
Identities = 1637/1710 (96%), Gaps = 4/1710 (0%)
Strand=Plus/Plus
Query 324 ATGGCGTATTCTGTTGTTCGGCTTCGAAAGGTTTCAGCTTTGGGGATTTCTCGTGTTCTT 383
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGTATTCTGTTCTTCGGCTTCGAAAGGTTTCAGCTTTGGGGATTTCTCGTGTTCTT 60
Query 384 CAAGCTGATAAAGGAAGTTTGTGGCGGTTTCACTTTGAACCTGAGTTTGGTGACCTTTTG 443
||||||||| | |||||||||||||||||| ||| ||||||||||||||||| |||||
Sbjct 61 CAAGCTGATCAGGGAAGTTTGTGGCGGTTTTACTCCGAACCTGAGTTTGGTGAGTTTTTG 120
Query 444 AGATTAGGTGTCTTGACTAGGAATTATAGAAAGAACTCTGGATCTCCAAAGTTTGATTTC 503
||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||
Sbjct 121 AGATTAGGTGTCTTGACTAGGAACTACAGAAAGAACTCAGGATCTCCAAAGTTTGATTTC 180
Query 504 ACTGGCACTGGAACCACCTCAAAGTTCGATTTCACTGATCTCACCTGTCCTCATACATGG 563
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ACTGGCACGGGAACTACCTCAAAGTTCGATTTCACTGATCTCACCTGTCCTCATACATGG 240
Query 564 TATCCTATAGCTCGGAAGAAGAAGCGTAAGGTCATTCTACATGTTGGCCCGACAAACAGC 623
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 241 TATCCAATAGCTCGGAAGAAGAAGCGTAAGGTTATTCTACATGTTGGCCCGACAAACAGT 300
Query 624 GGGAAGACATATAGTGCCCTTAAGCACCTTGAACAGAGTTCTTCAGGTGTATATTGTGGT 683
||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||
Sbjct 301 GGGAAGACATATAGTGCTCTTAAGCACCTTGAGCAGAGTTCTTCAGGCGTATATTGTGGT 360
Query 684 CCGTTAAGATTGTTGGCATGGGAGGTAGCTAAACGGTTAAACAAAGCAAATGTTCCATGT 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CCGTTAAGATTGTTGGCATGGGAGGTAGCTAAACGGTTAAACAAAGCAAATGTTCCATGT 420
Query 744 GATTTGATCACGGGACAAGAGAAAGACTTAGTGGAAGGGGCAACACACAAAGCTGTGACA 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GATTTGATCACGGGACAAGAGAAAGACTTAGTGGAAGGGGCAACACACAAAGCTGTGACA 480
Query 804 GTTGAAATGGCTGATGTTACATCTGTCTACGATTGTGCCATCATTGACGAAATTCAGATG 863
|||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct 481 GTTGAAATGGCTGATGTTACGTCGGTCTATGATTGTGCCATCATTGACGAAATTCAGATG 540
Query 864 GTGGGATGTAAACAAAGGGGATTTGCATTTACTCGTGCTTTACTTGGAATCGCGGCTGAT 923
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 541 GTGGGATGTACACAAAGGGGATTTGCATTTACTCGTGCTCTACTTGGAATCGCGGCTGAT 600
Query 924 GAGCTACATTTATGTGGCGATCCAGCTGTCGTACCTCTTGTTGAAGATATACTGAAAGTA 983
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 601 GAGCTACATCTATGTGGCGATCCTGCTGTCGTACCTCTTGTTGAAGATATACTGAAAGTA 660
Query 984 ACTGGAGATGATGTCGAGGTTC-ATACCTATGAGAGGCTTTCACCATTAGTCCCTTTGAA 1042
|||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||
Sbjct 661 ACTGGAGATGATGTCGAGGTTCGA-ACATATGAGAGGCTTTCACCATTAGTCCCTTTGAA 719
Query 1043 GGTTCCTGTTTCATCAGTTTCCAGTATTAAAACTGGGGATTGTCTTGTCACTTTTTCCCG 1102
||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 720 GGTGCCTGTTTCATCAGTTTCCAGTATCAAAACTGGGGATTGTCTTGTCACCTTTTCCCG 779
Query 1103 AAAAGATATATATGCGTATAAGAAAACAATTGAACGTGCGGGGAAGCATCTTTGCTCTGT 1162
||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 780 AAAAGATATATATGCATATAAGAAAATAATTGAACGTGCGGGGAATCATCTTTGCTCTGT 839
Query 1163 GGTTTATGGTTCGTTGCCTCCAGAGACTCGCACGGCACAGGCAACAAGGTTTAACGATGA 1222
|||||||||||| ||||||||||||||||| || |||||||||||||||||||| || ||
Sbjct 840 GGTTTATGGTTCATTGCCTCCAGAGACTCGGACAGCACAGGCAACAAGGTTTAATGACGA 899
Query 1223 GACCAATGACTTTGATGTGCTTGTTGCCAGCGATGCGATTGGCATGGGTCTTAATTTGAA 1282
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 900 GACCAATGACTTTGATGTGCTTGTTGCCAGCGATGCAATTGGCATGGGTCTTAATTTGAA 959
Query 1283 TATTTCAAGGATTATCTTCTCGACCCTTCAAAAATATGATGGTTCCGAGACCAGAGACCT 1342
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 960 TATTTCAAGGATTATCTTCTCGACCCTTCAAAAATTTGATGGTTCCGAGACCAGAGACCT 1019
Query 1343 AACAGTATCTGAGATTAAACAAATTGCAGGGAGAGCTGGCAGGTTTCAATCAAAGTTCCC 1402
|||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||
Sbjct 1020 AACAGTATCTGAGATTAAACAAATTGCAGGGAGAGCTGGCAGATTCCGATCAAAGTTCCC 1079
Query 1403 TATTGGCGAAGTAACTTGTTTGCACAAAGAGGATCTTCCGTTGCTTCACTCTTCTCTCAA 1462
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1080 TATTGGCGAAGTAACTTGTTTGCACAAAGAGGATCTTCCGTTGCTCCACTCTTCTCTCAA 1139
Query 1463 GTCTCCATCACCTATTCTTGAGCGTGCTGGACTATTTCCAACATTTGACCTCCTATCTGG 1522
|||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1140 GTCTCCTTCACCTCTTCTTGAGCGTGCTGGACTATTTCCAACATTTGACCTCCTTTCTAG 1199
Query 1523 GTATTCCCAAGCACACCCTACACACGGGTTGTACCAGATATTGGAACATTTTGTTGAAAA 1582
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1200 GTATTCCCAAGCACACCCTAAACACGGGTTGTACCAGATATTGGAACATTTTGTTGAAAA 1259
Query 1583 TGCTAAGCTGTCTTCAAACTACTTCATCTCTAATGTTGAAGACATGATGAAAGTTGCTGC 1642
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1260 TGCTAAGCTGTCTTCAAACTATTTCATCTCAAATGTTGAAGACATGATGAAAGTTGCTGC 1319
Query 1643 CATTGTTGATGAATTACCCCTCGGATTGCAAGAGAAGTATCTTTTCGTGGTCAGTCCAGT 1702
||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||
Sbjct 1320 CATTGTTGATGAATTACCCCTCGGATTGCAAGAGAAGTACCTCTTCGTAGTCAGTCCAGT 1379
Query 1703 TGATGTAAATGACGAAATTTCAGGTCAGGGACTTGCACAGTTTGCTCAAAACTTCTCGAA 1762
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1380 TGATATAAATGACGAAATTTCAGGTCAGGGACTTGCACAGTTTGCTCACAACTTCTCGAA 1439
Query 1763 GGCAGGCATTGTGAGGCTCCGGGAGATACTTGCA-CCTGACAGAGTGAAGGTTCCCAAAA 1821
||||||| |||||||||||||||||||||||||| || |||||||| |||||||||||||
Sbjct 1440 GGCAGGCGTTGTGAGGCTCCGGGAGATACTTGCAGCC-GACAGAGTTAAGGTTCCCAAAA 1498
Query 1822 CACCTACAGAACTCAAGGAACTTGAATCCATTCACAAGGTTTTGGATCTGTACGTATGGT 1881
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 CACCAACAGAACTAAAGGAACTTGAATCCATTCACAAGGTTTTGGATCTGTACGTATGGT 1558
Query 1882 TAAGCTTAAGGCTAGAGGATTCTTTTCCTGACCGCGAAGTAGCAGCTTCGCAAAAGTCAA 1941
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 TAAGCTTAAGGCTAGAGGATTCTTTTCCTGACCGCGAAGTAGCAGCTTCGCAAAAGTCAA 1618
Query 1942 TCTGCAATTTATTGATTGAGCAATTCTTAGAGGGAAATAGACTAAACTCTCCTGCCCGCT 2001
|||||||| ||||||||||||||||||| |||||||||||| ||||||||||| |||||
Sbjct 1619 TCTGCAATATATTGATTGAGCAATTCTTGGAGGGAAATAGATTAAACTCTCCTACCCGCG 1678
Query 2002 TCTCACGATATCTAAGGCGGCAAAAACTCT 2031
|||||||||||||||| ||||||| |||
Sbjct 1679 TCTCACGATATCTAAGAAAGCAAAAATTCT 1708
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88864541585
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5