BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G14805.1 Length=660 Score E Sequences producing significant alignments: (Bits) Value Ahg493415 jgi|Araly1|493415|fgenesh2_kg.7__2848__AT4G14805.1 880 0.0 Ahg928331 jgi|Araly1|928331|scaffold_300788.1 182 4e-45 > Ahg493415 jgi|Araly1|493415|fgenesh2_kg.7__2848__AT4G14805.1 Length=648 Score = 880 bits (476), Expect = 0.0 Identities = 592/646 (92%), Gaps = 15/646 (2%) Strand=Plus/Plus Query 15 CACCGGCGTTTTCATCCTCATACTCACGATCACCTTCTCCTCCTCCTCCGCCGTAACCGC 74 ||||| ||| ||||||||||||||| |||||||| | | |||||||||||||||| |||| Sbjct 18 CACCGTCGTCTTCATCCTCATACTCGCGATCACC-T-T-CTCCTCCTCCGCCGTATCCGC 74 Query 75 GACGCAGCAAGCACCTTCGTCTTCTCCACCGGTTCTGACTTGTACGGAGGAGCTCGTCAT 134 || | ||||||||||||||||||||||||| ||| |||||||||||||||||||||||| Sbjct 75 GA--C-GCAAGCACCTTCGTCTTCTCCACCGATTCCGACTTGTACGGAGGAGCTCGTCAT 131 Query 135 GTTCTCTCCTTGCCTTCCTTACGTCTCCTCTCCACCAAACAATATGTCAGAGACTCCGGA 194 |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 132 GTTCTCTCCTTGCCTTCCTTACGTCTCCGCTCCACCAAACAACATGTCAGAGACTCCGGA 191 Query 195 TCCTATTTGCTGCTCGGTTTTTACCTCCTCCGTTCATTCTAGCACCGGAAACTGTCTCTG 254 ||||||||||||||| |||||||||||||||||||||| |||| |||||||||| ||||| Sbjct 192 TCCTATTTGCTGCTCCGTTTTTACCTCCTCCGTTCATTTTAGCGCCGGAAACTGCCTCTG 251 Query 255 TTATCTTCTCCGGCAGCCGATGATCCTTGGATTCCCGTTGGATAGATCTAGATTGATTTC 314 |||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||| Sbjct 252 TTATCTTCTCCGACAGCCGATGATCCTCGGATTCCCGTTGGATAGATCTCGATTGATTTC 311 Query 315 TCTTTCTCAGATCTGTACCGATCAGAATTCCGAAGAATCTTTCGAATCTCTCTGTTCGGT 374 | |||| |||||||||||||||||||| ||| | |||||||||||||||||||||||| | Sbjct 312 TATTTCCCAGATCTGTACCGATCAGAACTCCTACGAATCTTTCGAATCTCTCTGTTCGCT 371 Query 375 ATCAGAGTCGCCGGAGCTTCCTCCGCTTCAGAGTATTCAGTTCACAAATCCGTTTGTTTC 434 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 372 ATCAGAGTCGCCGGAGCTTCCGCCGCTTCAGAGTATTCAGTTCACAAATCCGTTTGTTTC 431 Query 435 CGGTAATAATGTTTCTGCCTCTCCTCAATCAGTCGACTTAGCACCGGAAGTTTCACCAAG 494 ||||||| | | ||| || ||||||| ||| |||| |||||||||||||||||||||||| Sbjct 432 CGGTAATCACGATTCCGCTTCTCCTCCATCGGTCGGCTTAGCACCGGAAGTTTCACCAAG 491 Query 495 CTCCGATCTATTCTCACCGGAAACAGCCACCCTAGcaccaccaccaccaccaccaccacT 554 |||||||| |||||||||||||||||||||| ||||||||||||||||||||||| || Sbjct 492 CTCCGATCAATTCTCACCGGAAACAGCCACCATAGCACCACCACCACCACCACCAG-AC- 549 Query 555 ACCAGTTCTACAATACTTCTCAAGCGACTCTCTCAAGATCAGAAACTTCTGGTTTCCATC 614 | | ||||||| ||||||||||||||| |||||||||||||||||||||||||| Sbjct 550 ----G--C-ACAATACATCTCAAGCGACTCTCAAAAGATCAGAAACTTCTGGTTTCCATC 602 Query 615 GACTATCATCATGACTTTTGCCACTTCTATTCTCGCTCGTATCTGA 660 |||||||||||||||||||||| ||||||||||| |||| |||||| Sbjct 603 GACTATCATCATGACTTTTGCCTCTTCTATTCTCACTCGGATCTGA 648 > Ahg928331 jgi|Araly1|928331|scaffold_300788.1 Length=311 Score = 182 bits (98), Expect = 4e-45 Identities = 113/120 (94%), Gaps = 2/120 (2%) Strand=Plus/Plus Query 542 caccaccaccacTACCAGTTCTACAATACTTCTCAAGCGACTCTCTC-AAGATCAGAAAC 600 |||||||||||| |||||||| ||||||| ||||||||||||||| | |||||||||||| Sbjct 172 CACCACCACCACCACCAGTTCCACAATACATCTCAAGCGACTCTC-CAAAGATCAGAAAC 230 Query 601 TTCTGGTTTCCATCGACTATCATCATGACTTTTGCCACTTCTATTCTCGCTCGTATCTGA 660 ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 231 TTCTGGTTTCCATTGACTATCATCATGACTTTTGCCACTTCTATTCTCACTCGTATCTGA 290 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24208052295 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5