BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14805.1
Length=660
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493415 jgi|Araly1|493415|fgenesh2_kg.7__2848__AT4G14805.1 880 0.0
Ahg928331 jgi|Araly1|928331|scaffold_300788.1 182 4e-45
> Ahg493415 jgi|Araly1|493415|fgenesh2_kg.7__2848__AT4G14805.1
Length=648
Score = 880 bits (476), Expect = 0.0
Identities = 592/646 (92%), Gaps = 15/646 (2%)
Strand=Plus/Plus
Query 15 CACCGGCGTTTTCATCCTCATACTCACGATCACCTTCTCCTCCTCCTCCGCCGTAACCGC 74
||||| ||| ||||||||||||||| |||||||| | | |||||||||||||||| ||||
Sbjct 18 CACCGTCGTCTTCATCCTCATACTCGCGATCACC-T-T-CTCCTCCTCCGCCGTATCCGC 74
Query 75 GACGCAGCAAGCACCTTCGTCTTCTCCACCGGTTCTGACTTGTACGGAGGAGCTCGTCAT 134
|| | ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 75 GA--C-GCAAGCACCTTCGTCTTCTCCACCGATTCCGACTTGTACGGAGGAGCTCGTCAT 131
Query 135 GTTCTCTCCTTGCCTTCCTTACGTCTCCTCTCCACCAAACAATATGTCAGAGACTCCGGA 194
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 132 GTTCTCTCCTTGCCTTCCTTACGTCTCCGCTCCACCAAACAACATGTCAGAGACTCCGGA 191
Query 195 TCCTATTTGCTGCTCGGTTTTTACCTCCTCCGTTCATTCTAGCACCGGAAACTGTCTCTG 254
||||||||||||||| |||||||||||||||||||||| |||| |||||||||| |||||
Sbjct 192 TCCTATTTGCTGCTCCGTTTTTACCTCCTCCGTTCATTTTAGCGCCGGAAACTGCCTCTG 251
Query 255 TTATCTTCTCCGGCAGCCGATGATCCTTGGATTCCCGTTGGATAGATCTAGATTGATTTC 314
|||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 252 TTATCTTCTCCGACAGCCGATGATCCTCGGATTCCCGTTGGATAGATCTCGATTGATTTC 311
Query 315 TCTTTCTCAGATCTGTACCGATCAGAATTCCGAAGAATCTTTCGAATCTCTCTGTTCGGT 374
| |||| |||||||||||||||||||| ||| | |||||||||||||||||||||||| |
Sbjct 312 TATTTCCCAGATCTGTACCGATCAGAACTCCTACGAATCTTTCGAATCTCTCTGTTCGCT 371
Query 375 ATCAGAGTCGCCGGAGCTTCCTCCGCTTCAGAGTATTCAGTTCACAAATCCGTTTGTTTC 434
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 372 ATCAGAGTCGCCGGAGCTTCCGCCGCTTCAGAGTATTCAGTTCACAAATCCGTTTGTTTC 431
Query 435 CGGTAATAATGTTTCTGCCTCTCCTCAATCAGTCGACTTAGCACCGGAAGTTTCACCAAG 494
||||||| | | ||| || ||||||| ||| |||| ||||||||||||||||||||||||
Sbjct 432 CGGTAATCACGATTCCGCTTCTCCTCCATCGGTCGGCTTAGCACCGGAAGTTTCACCAAG 491
Query 495 CTCCGATCTATTCTCACCGGAAACAGCCACCCTAGcaccaccaccaccaccaccaccacT 554
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 492 CTCCGATCAATTCTCACCGGAAACAGCCACCATAGCACCACCACCACCACCACCAG-AC- 549
Query 555 ACCAGTTCTACAATACTTCTCAAGCGACTCTCTCAAGATCAGAAACTTCTGGTTTCCATC 614
| | ||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 550 ----G--C-ACAATACATCTCAAGCGACTCTCAAAAGATCAGAAACTTCTGGTTTCCATC 602
Query 615 GACTATCATCATGACTTTTGCCACTTCTATTCTCGCTCGTATCTGA 660
|||||||||||||||||||||| ||||||||||| |||| ||||||
Sbjct 603 GACTATCATCATGACTTTTGCCTCTTCTATTCTCACTCGGATCTGA 648
> Ahg928331 jgi|Araly1|928331|scaffold_300788.1
Length=311
Score = 182 bits (98), Expect = 4e-45
Identities = 113/120 (94%), Gaps = 2/120 (2%)
Strand=Plus/Plus
Query 542 caccaccaccacTACCAGTTCTACAATACTTCTCAAGCGACTCTCTC-AAGATCAGAAAC 600
|||||||||||| |||||||| ||||||| ||||||||||||||| | ||||||||||||
Sbjct 172 CACCACCACCACCACCAGTTCCACAATACATCTCAAGCGACTCTC-CAAAGATCAGAAAC 230
Query 601 TTCTGGTTTCCATCGACTATCATCATGACTTTTGCCACTTCTATTCTCGCTCGTATCTGA 660
||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 231 TTCTGGTTTCCATTGACTATCATCATGACTTTTGCCACTTCTATTCTCACTCGTATCTGA 290
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24208052295
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5