BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14815.1
Length=742
Score E
Sequences producing significant alignments: (Bits) Value
Ahg890836 jgi|Araly1|890836|Al_scaffold_0007_2822 667 0.0
> Ahg890836 jgi|Araly1|890836|Al_scaffold_0007_2822
Length=468
Score = 667 bits (361), Expect = 0.0
Identities = 438/474 (92%), Gaps = 9/474 (2%)
Strand=Plus/Plus
Query 80 ATGAAACCTAGAATGTGTTTAATCTTGTTTATTGCTTTAATGAG-AGTAATGTCGATTGT 138
||||||||||||||||||||||| |||||||| ||||||||| | ||| ||||| | ||
Sbjct 1 ATGAAACCTAGAATGTGTTTAATGTTGTTTATAGCTTTAATG-GCAGTGATGTCAACAGT 59
Query 139 TTCTGCTCAGTCGAGTTGCACAAATGTTCTAATCAGCATGGCGCCGTGTCTCAGCT-TCA 197
|||||||||||| || ||||||||||| |||||||||||||||||||||||| ||| | |
Sbjct 60 TTCTGCTCAGTCAAGCTGCACAAATGTCCTAATCAGCATGGCGCCGTGTCTCGGCTAT-A 118
Query 198 TCACTCAAAACACTTCT-CTCCCGTCTCAACAATGTTGTAACCAGTTGGCTCATGTTGTC 256
||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||
Sbjct 119 TCACTCAAAACACTTCTACT-CCGTCTCAACAATGTTGTAGCCAGTTGGCTCATGTTGTT 177
Query 257 CGGTATTCTTCTGAGTGTTTGTGTCAGGTTCTCGATGGTGGAGGTTCTCAGCTTGGGATC 316
|| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 178 CGATATTCTTCTGAGTGTTTGTGTGAAGTTCTCGATGGTGGAGGTTCTCAGCTTGGGATC 237
Query 317 AATGTTAATGAGACACAAGCTCTTGCTTTGCCTAAAGCTTGTCATGTTGAAACTCCTCCT 376
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 238 AATGTTAATGAGACACAAGCTCTTGCTTTGCCTAAAGCTTGTCATGTCGAAACTCCTCCA 297
Query 377 GCTAGTCGCTGCCATAGTGGTTCTTCGGTTAATTCACATTCAGAACATGGAAATGGATCA 436
|||||||| ||| |||||||||||||||||||||| ||| ||||||||||||| | ||||
Sbjct 298 GCTAGTCGTTGCAATAGTGGTTCTTCGGTTAATTCGCATACAGAACATGGAAACGAATCA 357
Query 437 AAAACAGTCCCAAGAGAAAAGTCATCATCTGATGGTTCTATTAAGTTCTCATTCCCTCTT 496
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 358 AAAACAGTCCCAGGAGAAAAGTCATCATCTAATGGTTCTATTAAGTTCTCATTCCCTCTT 417
Query 497 CTCGCCATCCTATTCACAGCTTCTTACATTACATTAATCTACGCAAAATACTGA 550
||||||||||| ||||||||||||||||| ||| ||||| |||||||||||||
Sbjct 418 CTCGCCATCCTTTTCACAGCTTCTTACAT--CAT-AATCTTCGCAAAATACTGA 468
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27334131489
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5