BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G14819.1

Length=527
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg493413 jgi|Araly1|493413|fgenesh2_kg.7__2846__AT4G14819.1         667    0.0  


> Ahg493413 jgi|Araly1|493413|fgenesh2_kg.7__2846__AT4G14819.1
Length=463

 Score =  667 bits (361),  Expect = 0.0
 Identities = 418/445 (94%), Gaps = 5/445 (1%)
 Strand=Plus/Plus

Query  43   CATAATTTCAAAAACGTTGAATCA-TTTTCTTTCTCG-TTCAGAGCTCTAGATTAGTCAA  100
            ||||| |||| |||||||||| || |||| ||||||| ||  |||||  ||||| |||||
Sbjct  20   CATAAATTCATAAACGTTGAAACATTTTTATTTCTCGATT-GGAGCTAAAGATTGGTCAA  78

Query  101  TAATGGAGATTGAATCGGTGACGTGCGAGTGTTGCGGCTTAATGGAAGATTGTACACAAC  160
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  79   TAATGGAGATTGAATCGGTGACGTGCGAATGTTGCGGCTTAATGGAAGATTGTACACAAC  138

Query  161  ACTACATTAGTAAAGTCAAAGCTAACTTCGCCGGGAAATGGCTTTGTGGGCTTTGCTCCG  220
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  139  ACTACATTAGTAAAGTCAAAGCTAACTTCGCCGGAAAATGGCTTTGTGGGCTTTGCTCCG  198

Query  221  AGGCGGTAAGCGACGAATTCAGCCGTAGTTCGAAGACGGTGGAGGAAGCTGTTAATGCAC  280
            |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct  199  AGGCCGTAAGCGACGAATTTAGCCGTAGTTCGAAGACGGTGGAGGAAGCTGTTAATGCTC  258

Query  281  ACATGTCGTTTTGTGGCAAGTTTAACGCTAACCCCGCAGAACTCGTCGCCGACGGCATGA  340
            || ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct  259  ACGTGTCGTTTTGTGGCAAGTTTAACGCCAACCCCGCAGAACTTGTCGCCGACGGCATGA  318

Query  341  GACAGATGCTACGAAGGAGGTCCGGTGAGTTATCACCGAAGATGTCCAAGAAGTTCGGAA  400
            |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct  319  GACAGATGCTACGAAGGAGGTCCGGTGAGTTATCGCCGAAGATGGCCAAGAAGTTCGGAA  378

Query  401  GATCTAACACCACATAATTCATGTAGTC-ATCTTTTTCTCACTTTT-GCCTTAAAGTTTT  458
            |||||||||||||||||||  ||||| | ||||||||||||||||| |||||||||||||
Sbjct  379  GATCTAACACCACATAATTTGTGTAGCCTATCTTTTTCTCACTTTTTGCCTTAAAGTTTT  438

Query  459  GGCTAATGTAAAGTATAATAAAAGT  483
            |||||||||||| ||||||||||||
Sbjct  439  GGCTAATGTAAAATATAATAAAAGT  463



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19192261267


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5