BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14830.1
Length=1021
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946862 jgi|Araly1|946862|scaffold_703091.1 726 0.0
Ahg493410 jgi|Araly1|493410|fgenesh2_kg.7__2843__AT4G14840.1 501 4e-141
Ahg923362 jgi|Araly1|923362|scaffold_104643.1 488 3e-137
> Ahg946862 jgi|Araly1|946862|scaffold_703091.1
Length=500
Score = 726 bits (393), Expect = 0.0
Identities = 468/504 (93%), Gaps = 6/504 (1%)
Strand=Plus/Plus
Query 53 TCACACCCaaaaaaaaaaGACCCATGAAAATCCACCCATTACCCAGAAACGA-AAATAAC 111
|||| | || |||||||| | |||||| ||||||||||||||| |||||| | || |||
Sbjct 1 TCACTCTCACAAAAAAAA-A-CCATGAGAATCCACCCATTACCTAGAAAC-AGCAACAAC 57
Query 112 AACAATCTGATCCATCACGCTCGTGATCCGACCCGAGAACCCGGAAAGAAGCTCCGTCGT 171
|||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 58 AACATTCTGATCCATCACGCTCGTGATCCGACCCGAGAACCGGGAAAGAAGCTCCGACGT 117
Query 172 CTCCCACATATCTTCAGCCGTGTTCTAGAGCTGCCCTTGAAGTCAGACGCTGACGTGGCT 231
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 118 CTCCCACATATCTTCAACCGTGTTCTAGAGCTGCCCTTGAAGTCGGACGCTGACGTGGAA 177
Query 232 GTTGAAGAGAGTCATGACTGCTTCAGGTTCGTCGCGGAAACAGACGGGGGAGGAGGAGGA 291
||||||||||||||||| ||||||||||||||||||||||| || || || |||||||||
Sbjct 178 GTTGAAGAGAGTCATGATTGCTTCAGGTTCGTCGCGGAAACTGATGGTGGTGGAGGAGGA 237
Query 292 GGTGTGAGGGCTTACATGGTTGAGATTCATCCTGGTGTGACCAAGATTCTTGTGAGAACC 351
||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 238 GGTGTGAGGGCTTACATGGTTGAGATTCATCCTGGTGTGGTCAAGATTCTGGTGAGAACC 297
Query 352 AATGGTTCATCGTCTCTTGGTTTGTCGCTTGATGAGCTTGAGCTTGACGTGTGGCGTTTC 411
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 AATGGTTCTTCGTCTCTTGGTTTGTCGCTTGATGAGCTTGAGCTTGACGTGTGGCGTTTC 357
Query 412 AGGCTACCGGAATCAACTAGGCCTGAGCTCGTTACCGTGGATTGCGACGGCGATGGAGAA 471
|||||||||||| ||||||||||||| ||||| ||||||||||||||||| |||||||||
Sbjct 358 AGGCTACCGGAAGCAACTAGGCCTGATCTCGTGACCGTGGATTGCGACGGTGATGGAGAA 417
Query 472 TTGATTGTCACTGTGCCTAAGATTGAAGACAA-TGGTAGAGATTTGATAGTGCTTGTACA 530
|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 418 TTGATTGTCACTGTGCCTAAGATTGAAGACAACTC-TAGAGATTTGATAGTGCTTGTACA 476
Query 531 GTAATCTAATGTGTTTGTGATCAA 554
||||||||||||| | ||||||||
Sbjct 477 GTAATCTAATGTGATAGTGATCAA 500
> Ahg493410 jgi|Araly1|493410|fgenesh2_kg.7__2843__AT4G14840.1
Length=1724
Score = 501 bits (271), Expect = 4e-141
Identities = 319/343 (93%), Gaps = 0/343 (0%)
Strand=Plus/Minus
Query 679 TTTAGAGATAAAATCCTTTGAGAGGGGCAAATTTATTGAGGATCTCTGATTCACGTTTAA 738
|||||||||||||||||||||| ||||||||||||||||| ||||||| ||| |||||||
Sbjct 1724 TTTAGAGATAAAATCCTTTGAGTGGGGCAAATTTATTGAGAATCTCTGCTTCGCGTTTAA 1665
Query 739 GAGCATTGTCTTTCTTCATTTCCCATTCAGGTTTCTTCAAGTTAGCTGCTTGAACTTCTT 798
||||||||||||||||||||||||| || ||||||||| ||||| |||||||||||||||
Sbjct 1664 GAGCATTGTCTTTCTTCATTTCCCAATCGGGTTTCTTCGAGTTAACTGCTTGAACTTCTT 1605
Query 799 GAACCACTTTAGGGATTGAGTTCGCTACCATCTTCTGACCAAAGATTAGATCAACCTTCT 858
| |||||||| ||||| |||||||||||||| |||||||| || |||||||||||||||
Sbjct 1604 GTACCACTTTCGGGATCGAGTTCGCTACCATTTTCTGACCGTAGCTTAGATCAACCTTCT 1545
Query 859 CTTTCCCCTTGTTACTGATGCAGCGGGTAAGCTCGGTTCGTTTAGCTTGAAGCTGAGCGA 918
||||| |||||||||| |||||| ||||||||||||| ||| ||||||||||||||||||
Sbjct 1544 CTTTCTCCTTGTTACTAATGCAGTGGGTAAGCTCGGTCCGTCTAGCTTGAAGCTGAGCGA 1485
Query 919 TTTGCTCGTCAATTTGACGGATTGTCTCTGAGTTTCTATCGACTTCCGTTTGGATATTGC 978
|||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||
Sbjct 1484 TTTGCTCGTCAATTTGACGGATTGTCTCTGTGTTTGTATCGACTTCCGTCTGGATATTGC 1425
Query 979 CTAGCTTGTCCTTTAAGTCGCTGTATTCGTACTTGAGAGATGC 1021
|||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1424 CTAGTTTGTCCTTTAAGTCGCTGTATTCGTACTTGAGAGATGC 1382
> Ahg923362 jgi|Araly1|923362|scaffold_104643.1
Length=405
Score = 488 bits (264), Expect = 3e-137
Identities = 310/332 (93%), Gaps = 4/332 (1%)
Strand=Plus/Plus
Query 214 TCAGACGCTGACGTGGCTGTTGAAGAGAGTCATGACTGCTTCAGGTTCGTCGCGGAAACA 273
||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 64 TCAGAAGCTGACGTGGCAGTTGAAGAGAGTCATGATTGCTTCAGGTTCGTCGCGGAAACG 123
Query 274 GACGGGGGAGGAGGAGGAGGTGTGAGG-GCTTACATGGTTGAGATTCATCCTGGTGTGAC 332
|| || || ||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 124 GATGGTGGTGGAGGAGGAGGTGTG-GGAGCTTACATGGTTGAGATTCATCCTGGTGTGGT 182
Query 333 CAAGATTCTTGTGAGAACCAATGGTTCATCGTCTCTTGGTTTGTCGCTTGATGAGCTTGA 392
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 183 CAAGATTCTGGTGAGAACCAATGGTTCTTCGTCTCTTGGTTTGTCGCTTGATGAGCTTGA 242
Query 393 GCTTGACGTGTGGCGTTTCAGGCTACCGGAATCAACTAGGCCTGAGCTCGTTACCGTGGA 452
|||||||||||||||||| |||||||||||||||||||||||||| || || ||||||||
Sbjct 243 GCTTGACGTGTGGCGTTTTAGGCTACCGGAATCAACTAGGCCTGATCTAGTGACCGTGGA 302
Query 453 TTGCGACGGCGATGGAGAATTGATTGTCACTGTGCCTAAGATTGAAGACAA-TGGTAGAG 511
||||||||| ||||||||||||||| ||||||||||||||||||||||||| | |||||
Sbjct 303 TTGCGACGGTGATGGAGAATTGATTATCACTGTGCCTAAGATTGAAGACAACT-CTAGAG 361
Query 512 ATTTGATAGTGCTTGTACAGTAATCTAATGTG 543
||||||||||||||||||||||||||||||||
Sbjct 362 ATTTGATAGTGCTTGTACAGTAATCTAATGTG 393
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37970425332
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5