BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14840.1
Length=1827
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493410 jgi|Araly1|493410|fgenesh2_kg.7__2843__AT4G14840.1 2200 0.0
> Ahg493410 jgi|Araly1|493410|fgenesh2_kg.7__2843__AT4G14840.1
Length=1724
Score = 2200 bits (1191), Expect = 0.0
Identities = 1571/1749 (90%), Gaps = 47/1749 (3%)
Strand=Plus/Plus
Query 2 TAAGATCGGCTACTCTGTTCTTGACTCTCCAAAGAATTAGGGTTTTTGGTCTGCTTCGAT 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TAAGATCGGCTACTCTGTTCTTGACTCTCCAAAGAATTAGGGTTTTTGGTCTGCTTCGAT 60
Query 62 GGATATGGATCAAGAGATAGGTCAAAATTCTCCTGGATTTGATGGTGAATCAGTAGTGTC 121
|||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
Sbjct 61 GGATATGGATCAAGAGATAGGTCAAAATTCTCCTAGATTTGATGGTGAATC---AGTGAC 117
Query 122 AATGAGTAATAGAAGCAAGGAGACTGAACCAGTCCCGGTTGAGAATGACTA-TTATCGGG 180
|||||||||| || ||||||||||| ||||||| ||||||||| ||| | || |||||
Sbjct 118 AATGAGTAAT--AA-CAAGGAGACTGGACCAGTCATGGTTGAGAAAGACGACTT-TCGGG 173
Query 181 AAAACGGATTCAACAGTGATGGTGATGGTGATGATGTGAAGGTTAATGGTGACAGAAGCT 240
||||||||||||| || || | |||||||||| |||||||||||||||| | ||||||
Sbjct 174 AAAACGGATTCAATAGAGAAGATGATGGTGATCATGTGAAGGTTAATGGCAATGGAAGCT 233
Query 241 CC-T---T-C-------ACTGATTTGAATCAACTCCCGGCGATTCCGCCAGCTTCTAGTG 288
|| | | | |||||||||||||||||||||||||||||||| | ||||||||
Sbjct 234 CCTTCACTCCTGGGGAAACTGATTTGAATCAACTCCCGGCGATTCCGCCGGTTTCTAGTG 293
Query 289 GTCAAGGTTTGCCGTTTGCACCTGTCGATTTCCCGAGCCCCGGCGATGTTTGGACTTGGA 348
||||||||||||||||||||||||| |||| ||||||||| || ||||||||||||||||
Sbjct 294 GTCAAGGTTTGCCGTTTGCACCTGTTGATTGCCCGAGCCCTGGTGATGTTTGGACTTGGA 353
Query 349 GAGTTGGGAGGAGAGTGAATAATGCCGGGTTCCATAAGGATCGCTTACTCATTCTCCCGG 408
|||||||||||||||||| |||| |||| ||||||||||||| || |||||||||||||
Sbjct 354 GAGTTGGGAGGAGAGTGACTAATAACGGGATCCATAAGGATCGGTTTCTCATTCTCCCGG 413
Query 409 AGAGGCTTAAGGGCAAGAATGTACCCAAATCTTTTGCAAGCAAAAACACTCTTTCGCGTT 468
| ||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||
Sbjct 414 AAAGGCTTAAGGGCAAGAATGCACCCAAATCTTTTGCAGGCAAAAACACTCTTTGGCGTT 473
Query 469 ATCTCGAAACTAGTTTCCCTGATATGGATGCTAATGCATTCTTTGCATCTTTTACCTGGA 528
|||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 474 ATCTCGAAACTAACTTCCCTGATATGGATGCTGATGCATTCTTTGCATCTTTTAGCTGGA 533
Query 529 ACATTCCGGCTTTGTTTCAGCCTGCAGAA-AGAGTTGATGCTGCGTCTCTGTTTGAAGAG 587
| || ||||||||||||||||| ||| || | ||||||||||||||||||||||||||||
Sbjct 534 ATATCCCGGCTTTGTTTCAGCCCGCA-AATAAAGTTGATGCTGCGTCTCTGTTTGAAGAG 592
Query 588 ACATCCAAAGAAGGACAGAATCAAGATGAGGATGCTGAGGATGTaaaaaaaGAAGGATCA 647
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 593 ACATCCAAAGAAGGACAGAATCAAGATGAGGATGCCGAGGATGTAAAAAAAGAAGGATCA 652
Query 648 ACTTCGCGTTACAGCCAGAGGAAGA-GAAAACAGGTGCAGATACAGACTAATGAACC--- 703
||||||||||||||||||||||||| |||| | ||||||||||| | ||||||||||
Sbjct 653 ACTTCGCGTTACAGCCAGAGGAAGAGGAAAGC-GGTGCAGATACGGGCTAATGAACCTGT 711
Query 704 TAAAGCAACTCCGCGAGCTAGCAACAG-GAAAAAGACAGCCA-CAACAACACCAGCTGCT 761
| ||| || || ||| | | | | || || || || || || | ||| |
Sbjct 712 TGAAGAAAAGCCTAAAGC-AAC-TCCGCGAGCTAG-CA-ACAGGAAAAAGA-AAGC--C- 763
Query 762 GAACATAAGTCAGCTCGGGAATCTTCCTCGAAACG-TTACACAAGACAGCAACAAGGTGA 820
||||||||||| |||||||||||||||||| ||| || |||||||||||||||||||||
Sbjct 764 AAACATAAGTCATCTCGGGAATCTTCCTCGAGACGCTT-CACAAGACAGCAACAAGGTGA 822
Query 821 TGTGTTTGACTTGACTGAAGAAAACAAGGAATCAGATGCAAAGAAAGGCAGCAAGAGGAT 880
|||| |||||||||| |||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct 823 TGTGGTTGACTTGACGGAAGAAAATAAGGAATCAGATGCAAATAAAGGCAGCAAGAGAAT 882
Query 881 GAAGAAACGCAGAGGTAACTATGCAGACgaagaagaagaagaagaGGCTTTTGTTCCGCA 940
|||||||||||||||||||||||||||| |||||||||| | | ||||| ||||| ||
Sbjct 883 GAAGAAACGCAGAGGTAACTATGCAGAC---GAAGAAGAAG-A-A-GCTTTGGTTCCTCA 936
Query 941 TATCTATGTTTCTTCTATGAACGGTGTCATTGCAGTCTCTCACCCTCCTGTGGATATAAA 1000
||||||||||||| |||||||||||||| || | ||||| ||||||| ||||||||||||
Sbjct 937 TATCTATGTTTCTCCTATGAACGGTGTCCTTTCGGTCTCCCACCCTCTTGTGGATATAAA 996
Query 1001 CCCAGAAGAGTTTGACAGTTATCTGAACTCTCTAGAGAATCTTCTTCA-GCAACAGCCTT 1059
||||||||||||||||||||||||||||||||||||||| |||||||| | |||| ||||
Sbjct 997 CCCAGAAGAGTTTGACAGTTATCTGAACTCTCTAGAGAACCTTCTTCAAG-AACAACCTT 1055
Query 1060 CAGAAGCAGGACAGGAGTCTTCATCATCACTTCCCGTTAGTGCAAGCTCTCCAGTGAGAG 1119
||||||| ||||| |||||||||||||| |||||||||||||||||||| ||| |||| |
Sbjct 1056 CAGAAGCGGGACAAGAGTCTTCATCATCTCTTCCCGTTAGTGCAAGCTCGCCAATGAGGG 1115
Query 1120 ATTACGAATGGACAGAAGCTCGAATGAAGCTTTCATCGCTTCTGGAGAAAGATTTCTCTT 1179
| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1116 AACACGAATGGGCAGAAGCTCGGATGAAGCTTTCATCGCTTCTGGAGAAAGATTTCTCTT 1175
Query 1180 CCTTGTTCATGTCTAATGAAGCTACGGAGATGGCAAGCTTGGCAGCTAAACTCAAGAAAG 1239
|||||||||| |||||||||| | |||||||||||||||||||||||||||| | | ||
Sbjct 1176 CCTTGTTCATATCTAATGAAGTTGCGGAGATGGCAAGCTTGGCAGCTAAACTGAGGCTAG 1235
Query 1240 ATCCAAGCCTATCAGCTGAAGAAATAGTGAGGTTGAAGCTAATCGAAGAAATTCCAACTT 1299
|||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1236 ATCCAAGCCTTTCAGCTGAAGAAATAGTGAGATTGAAGCTTATCGAAGAAATTCCAACTT 1295
Query 1300 TCAGCGAAGTTTTTCAAGAGAACCAAAGCATGATAGTAGAAGCAGATAGGTTCTTCTCCG 1359
| ||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||
Sbjct 1296 TTAGCGAAGTTTTTCAAGAGAACAAAAGTGTGATAGAAGAAGCAGATAGGTTCTTCTCCG 1355
Query 1360 CTCTCGAGCTTAACAAAGCGAAGGTCGCATCTCTCAAGTACGAATACAGCGACTTAAAGG 1419
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 1356 CTCTCGAGCTTAACAAATCGAAAGTCGCATCTCTCAAGTACGAATACAGCGACTTAAAGG 1415
Query 1420 ACAAGCTAGGCAATATCCAAACGGAAGTCGATAGAAACTCAGAGACAATCCGTCAAATTG 1479
|||| |||||||||||||| ||||||||||||| |||| |||||||||||||||||||||
Sbjct 1416 ACAAACTAGGCAATATCCAGACGGAAGTCGATACAAACACAGAGACAATCCGTCAAATTG 1475
Query 1480 ACGAGCAAATCGCTCAGCTTCAAGCTAAACGAACCGAGCTTACCCGCTGCATCAGTAACA 1539
||||||||||||||||||||||||||| ||| ||||||||||||| |||||| |||||||
Sbjct 1476 ACGAGCAAATCGCTCAGCTTCAAGCTAGACGGACCGAGCTTACCCACTGCATTAGTAACA 1535
Query 1540 AGGGGAAAGAGAAGGTTGATCTAATCTTTGGTCAGAAGATGGTAGCGAACTCAATCCCTA 1599
||| |||||||||||||||||||| || |||||||| |||||||||||||| ||||| |
Sbjct 1536 AGGAGAAAGAGAAGGTTGATCTAAGCTACGGTCAGAAAATGGTAGCGAACTCGATCCCGA 1595
Query 1600 AAGTGGTTCAAGAAGTTCAAGCAGCTAACTTGAAGAAACCTGAATGGGAAATGAAGAAAG 1659
||||||| |||||||||||||||| ||||| ||||||||| || ||||||||||||||||
Sbjct 1596 AAGTGGTACAAGAAGTTCAAGCAGTTAACTCGAAGAAACCCGATTGGGAAATGAAGAAAG 1655
Query 1660 ACAATGCTCTTAAACGTGAATCAGAGATCCTCAATAAATTTGCCCCTCTCAAAGGATTTT 1719
|||||||||||||||| ||| ||||||| ||||||||||||||||| |||||||||||||
Sbjct 1656 ACAATGCTCTTAAACGCGAAGCAGAGATTCTCAATAAATTTGCCCCACTCAAAGGATTTT 1715
Query 1720 ATCTCTAAA 1728
|||||||||
Sbjct 1716 ATCTCTAAA 1724
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68600531245
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5