BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14850.1
Length=2228
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493409 jgi|Araly1|493409|fgenesh2_kg.7__2842__AT4G14850.1 3229 0.0
> Ahg493409 jgi|Araly1|493409|fgenesh2_kg.7__2842__AT4G14850.1
Length=2151
Score = 3229 bits (1748), Expect = 0.0
Identities = 1992/2112 (94%), Gaps = 8/2112 (0%)
Strand=Plus/Plus
Query 51 CTTGAAAGCTATGACCTTTCCGATCACCGGCGTTAGTTATGAGC-CTCCTCTCCGCGGAC 109
||| ||||||||||||||||||||| |||||||||||||||| | ||||| ||||||||
Sbjct 29 CTTCAAAGCTATGACCTTTCCGATCTCCGGCGTTAGTTATGA-CGCTCCTAACCGCGGAC 87
Query 110 GCACTTGGGTTACTTCTCAAGAATGCAATCTCCGCGAGTTCCATGCGTTTGGGTCGCGTC 169
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 88 GCACTTGGGTTACTTCTCAAGAATGCAATCTCCACGAGCTCCATGCGTTTGGGTCGCGTC 147
Query 170 GTTCACGCAAGAATCGTCAAAACCCTCGATTCACCACCACCTCCGTTTCTCGCGAACTAT 229
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 148 GTTCACGCAAGAATCGTCAAAACCCTCGATTCACCACCACCTCCGTTTCTCGCAAACTAT 207
Query 230 CTCATCAACATGTACTCAAAACTCGACCATCCGGAATCAGCCCGACTCGTTCTCCGACTC 289
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 208 CTCATCAATATGTACTCAAAACTCGACCATCCTGAATCAGCCCGACTCGTTCTCCGACTC 267
Query 290 ACTCCTGCACGAAACGTCGTCTCTTGGACTTCACTTATCTCCGGACTTGCTCAGAACGGT 349
|||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 268 ACTCCTGCGCGAAACGTCGTCTCTTGGACCTCACTTGTCTCCGGACTTGCTCAGAACGGT 327
Query 350 CATTTCTCCACCGCTTTGGTTGAATTCTTCGAGATGCGACGAGAAGGTGTTGTTCCAAAT 409
|||||||||||||||||| |||||||||| || ||||||||||||||||||| ||||||
Sbjct 328 CATTTCTCCACCGCTTTGTTTGAATTCTTTGAAATGCGACGAGAAGGTGTTGCCCCAAAT 387
Query 410 GACTTCACTTTCCCTTGTGCTTTTAAAGCTGTGGCTTCTCTGCGTTTACCCGTTACTGGG 469
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 388 GACTTCACTTTCCCTTGTGCTTTTAAAGCTGTGGCTTCTCTGCGTTTACCTGTTACTGGG 447
Query 470 AAGCAGATTCATGCGCTTGCTGTGAAGTGTGGTAGGATACTTGATGTGTTTGTTGGGTGT 529
|||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||
Sbjct 448 AAGCAGATTCATGCGCTTGCTGTGAAATGTGGAAGAATACTTGATGTGTTTGTTGGGTGT 507
Query 530 AGTGCTTTTGATATGTATTGCAAAACTAGGCTTAGAGATGATGCACGGAAGTTGTTCGAT 589
|||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||
Sbjct 508 AGTGCTTTTGATATGTATTGTAAGACTAGGCTTAGGGATGATGCACGGAAGTTGTTCGAT 567
Query 590 GAAATTCCTGAGAGGAACCTTGAAACTTGGAATGCTTTTATATCTAACTCTGTGACTGAT 649
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 568 GAAATTCCTGAGAGGAACCTTGAAACTTGGAATGCTTATATATCTAACTCTGTGACTGAT 627
Query 650 GGAAGGCCTAGGGAAGCTATTGAAGCGTTTATTGAGTTTAGAAGGATTGATGGGC-ACCC 708
|||||||| | |||||||||||||||||||||||||||||||||||||| ||||| | ||
Sbjct 628 GGAAGGCCAAAGGAAGCTATTGAAGCGTTTATTGAGTTTAGAAGGATTGGTGGGCTA-CC 686
Query 709 GAATTCGATAACTTTTTGTGCTTTCCTTAATGCTTGTTCGGATTGGTTACACTTGAATCT 768
|||||||||||||||||||| ||| |||||||||||||||||| |||||| ||| || |
Sbjct 687 GAATTCGATAACTTTTTGTGGTTTTCTTAATGCTTGTTCGGATGGGTTACTTTTGGATTT 746
Query 769 AGGAATGCAGTTACACGGGCTTGTGTTACGAAGTGGGTTTGATACAGACGTCTCTGTTTG 828
||||||||| | || ||||||||||| ||||||||||||||||||||||| || || |
Sbjct 747 AGGAATGCAAATGCATGGGCTTGTGTTCCGAAGTGGGTTTGATACAGACGTTTCAGTGTA 806
Query 829 CAATGGGTTGATTGATTTCTATGGAAAGTGTAAGCAGATACGTAGCAGTGAGATTATCTT 888
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 807 CAATGGGTTGATCGATTTCTATGGAAAGTGTAAGCAGATTCGTAGCAGTGAGATTATCTT 866
Query 889 TACTGAAATGGGAACT-AAAAATGCTGTTTCTTGGTGTTCATTGGTTGCTGCATATGTGC 947
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 867 CGCTGAAATGGGAA-TAAAAAATGCTGTTTCTTGGTGTTCATTGGTTGCTGCATATGTGC 925
Query 948 AGAATCATGAGGATGAGAAGGCGTCTGTATTATATTTACGCTCAAGGAAGGATATTGTTG 1007
||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||
Sbjct 926 AGAATCATGAGGATGAGAAGGCGTCTGTATTATATCTACGTTCAAGGAAGGAAATTGTTG 985
Query 1008 AGACCTCTGATTTTATGATATCAAGTGTTCTGAGTGCGTGTGCTGGTATGGCTGGTCTTG 1067
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 986 AGACCTCTGATTTTATGATTTCAAGTGTTCTGAGTGCGTGTGCTGGTATGGCAGGTCTTG 1045
Query 1068 AGTTGGGAAGATCGATACATGCTCACGCTGTGAAGGCGTGTGTTGAAAGGACTATATTTG 1127
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 1046 AGTTAGGAAGATCGATACATGCTCACGCTGTGAAGGCGTGTGTTGAAAGGAATATTTTTG 1105
Query 1128 TTGGAAGTGCCCTCGTTGACATGTATGGAAAATGTGGATGTATAGAAGATTCAGAACAAG 1187
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1106 TTGGAAGTGCCCTCGTTGACATGTATGGAAAATGCGGATGCATAGAAGATTCAGAACAAG 1165
Query 1188 CGTTTGATGAGATGCCTGAGAAGAACTTAGTGACTCGGAATTCATTGATCGGAGGATATG 1247
||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||
Sbjct 1166 CGTTTGATGAGATGCCTGAAAAGAACTTAGTAACTCTGAATTCATTGATCGGAGGATATG 1225
Query 1248 CTCATCAGGGTCAGGTTGATATGGCATTGGCTTTATTTGAAGAAATGGCACCACGTGGAT 1307
||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1226 CTCATCAGGGTCAGGTTGACATGGCATTGGCGTTATTTGAAGACATGGCACCACGTGGAT 1285
Query 1308 GTGGTCCAACTCCAAATTATATGACTTTTGTGTCCTTGCTTTCCGCTTGTAGTAGAGCAG 1367
| ||||| ||||||| |||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1286 GCGGTCCGGCTCCAAACTATATGACGTATGTGTCCTTGCTTTCCGCTTGTAGTAGAGCAG 1345
Query 1368 GGGCTGTGGAAAATGGTATGAAGATATTTGATTCGATGAGGAGTACTTATGGCATTGAGC 1427
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 1346 GGGCTGTGGAAAATGGTATGAAAATATTTGATTCGATGAAGAGTACTTATGGCATTGAGC 1405
Query 1428 CAGGGGCTGAGCATTATTCATGCATCGTGGACATGCTAGGGCGAGCGGGAATGGTAGAAC 1487
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 1406 CAGGGGCTGAGCATTATTCCTGCATCGTGGACATGCTAGGGCGAGCAGGAATGGTAGAAC 1465
Query 1488 GGGCTTATGAATTCA-TAAAGAAAATGCCAATTCAACCGACAATTTCGGTTTGGGGTGCT 1546
||||| |||||||| |||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 1466 AGGCTTTTGAATTCATTAAA-AAAATGCCAATTAAACCGACAATTTCGGTTTGGGGTGCT 1524
Query 1547 CTTCAGAATGCTTGTAGGATGCATGGTAAGCCACAGCTGGGATTACTAGCAGCTGAGAAC 1606
||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||
Sbjct 1525 CTTCAGAATGCTTGTAGGATGCATGGTAAGCCACACCTCGGAATACTAGCAGCTGAGAAC 1584
Query 1607 CTTTTCAAACTCGACCCTAAGGATTCAGGCAACCACGTTCTGCTTTCCAATACGTTTGCA 1666
||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1585 CTTTTCAAACTTGACCCTAAAGATTCAGGCAACCACGTTCTGCTTTCGAATACGTTTGCA 1644
Query 1667 GCGGCTGGGAGGTGGGCGGAAGCCAACACCGTAAGAGAGGAGCTGAAAGGCGTAGGGATC 1726
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 1645 GCGGCTGGGAGGTGGGCGGAAGCCAACACCGTAAGAGAGGAGATGAAAGGCGTAGGAATC 1704
Query 1727 AAGAAAGGAGCCGGATACAGTTGGATCACAGTGAAGAACCAAGTCCATGCCTTTCAAGCC 1786
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1705 AAGAAAGGAGCCGGGTACAGTTGGATCACAGTGAAGAACCAAGTCCATGCCTTCCAAGCG 1764
Query 1787 AAGGACAGATCCCACATACTGAACAAAGAAATTCAAACAACGCTGGCCAAGCTAAGGAAC 1846
|||||||||||||||| | |||||||||| ||||| |||| |||| ||||||||||||||
Sbjct 1765 AAGGACAGATCCCACAAAATGAACAAAGAGATTCAGACAATGCTGACCAAGCTAAGGAAC 1824
Query 1847 GAAATGGAAGCTGCAGGGTACAAACCCGACCTGAAACTCTCGCTTTACGATCTGGAGGAA 1906
|||||| ||||||||||||| ||||||||||||||||| |||||||||||||| |||
Sbjct 1825 AAAATGGGGGCTGCAGGGTACATGCCCGACCTGAAACTCTCCCTTTACGATCTGGAAGAA 1884
Query 1907 GAAGAAAAAGCAGCAGAAGTCTCGCACCACAGTGAGAAACTGGCTCTAGCATTTGGATTG 1966
|||||||||||||||||||||||||||||||| || ||||| |||||||||||||| |||
Sbjct 1885 GAAGAAAAAGCAGCAGAAGTCTCGCACCACAGCGAAAAACTAGCTCTAGCATTTGGCTTG 1944
Query 1967 TTATCTTTACCACTCAGTGTCCCAATCAGAATCACCAAGAACCTTAGAATCTGCGGAGAT 2026
| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1945 GTGGCTTTACCACTCGGTGTCCCAATCAGAATCACCAAGAACCTTAGAATCTGTGGAGAT 2004
Query 2027 TGCCACAGCTTCTTCAAGTTTGTCTCTGGGAGTGTTAAACGAGAGATCATTGTGAGAGAC 2086
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 2005 TGCCACAGCTTCTTCAAGTTTGTCTCAGGGAGTGTTAAAAGAGAGATCATTGTGAGAGAC 2064
Query 2087 AATAACCGGTTTCATCGGTTTAAAGATGGGATATGTTCTTGTAAGGATTATTGGTAATCT 2146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2065 AATAACCGGTTTCATCGGTTTAAAGATGGGATATGTTCTTGTAAGGATTATTGGTAATCT 2124
Query 2147 TTATTAGTTTAG 2158
||||||||||||
Sbjct 2125 TTATTAGTTTAG 2136
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83874719490
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5