BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14860.1
Length=549
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946859 jgi|Araly1|946859|scaffold_703088.1 688 0.0
> Ahg946859 jgi|Araly1|946859|scaffold_703088.1
Length=586
Score = 688 bits (372), Expect = 0.0
Identities = 492/550 (89%), Gaps = 8/550 (1%)
Strand=Plus/Plus
Query 1 ATGTCTAATTTTCTAAGGAAGAAGCTACACCTCTGTTTCTCCTCTTCCGGTGGTCTCTCA 60
|||||||||||||||||||||||||| ||||| || |||||||| ||||||| |||||||
Sbjct 23 ATGTCTAATTTTCTAAGGAAGAAGCTTCACCTTTGCTTCTCCTCCTCCGGTGTTCTCTCA 82
Query 61 CCGTCGATTCCTTCCTCTCCGATCATCGTATCAAATCACAA-CGCTCAATCTCATCCTCA 119
||| |||||||||| ||||||||||| ||||| |||||||| ||| | |||||| |||
Sbjct 83 CCGGCGATTCCTTCTTCTCCGATCATTGTATCCAATCACAACCGC-CCATCTCA---TCA 138
Query 120 TCACACTCCCTCAATCTTCATCAACAACTTCAACTCTCTTTACGATCAGCTCTCTGTTTC 179
||||||||| ||| |||||||||||||||| || || || |||||||| |||||||||||
Sbjct 139 TCACACTCCATCACTCTTCATCAACAACTTTAATTCCCTCTACGATCACCTCTCTGTTTC 198
Query 180 TTCTCCCCTCCACCGCCGTCACAGTTCCGAGAACCCCGCCGGGGTGTTCTCCACTAACCG 239
|| |||||||||||||| |||||||| || ||||||||||| | ||||||||||||||
Sbjct 199 CTCACCCCTCCACCGCCGCCACAGTTCTGATAACCCCGCCGGAATCTTCTCCACTAACCG 258
Query 240 CCGCgaagaagaagaagaagaCGAAACCACCACCTCCGTTTCGAAGCTTTTAAGCGGCGG 299
|||| || |||||||||||||| ||| || | |||| || |||||||||||| ||||
Sbjct 259 CCGC---GACGAAGAAGAAGACGAGACCTCCGCAGCCGTGTCAAAGCTTTTAAGCAGCGG 315
Query 300 GACGGCGATAATGAAGCACATAGAGTCACCGGATCCGTACAGAGATTTCGGAAGATCGAT 359
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 316 AACGGCGATTATGAAGCACATAGAGTCACCGGATCCGTACAGAGATTTTGGAAGATCAAT 375
Query 360 GAGAGAGATGGTGGAAGCTAGAGATTTAACGAGAGACGTCGTCGCCGATAGAGAATACTT 419
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 376 GAGAGAAATGGTGGAAGCAAGAGATTTAACGAGAGACGTCGTCGCCGATAGAGAATACTT 435
Query 420 GCACGAACTGTTATTCTGTTATCTCTATTTGAATCCGAAACATACTCACAGATTCATCGT 479
|||||| |||||||||||||||||| |||||||||||||| ||||||| |||||||||
Sbjct 436 ACACGAATTGTTATTCTGTTATCTCTCGTTGAATCCGAAACACACTCACAAATTCATCGT 495
Query 480 CTCTGCTTTCGCCGATACGCTCCTCTGGTTACTTTCTCCGTCGCCGTCGCCAGAGCATTT 539
|||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||| ||
Sbjct 496 CTCTGCTTTCGCCGATACACTCCTCTGGTTACTTTCTCCGTCGTCGTCGCCGGAGCACTT 555
Query 540 TTTATCCTAA 549
||||||||||
Sbjct 556 TTTATCCTAA 565
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20031684225
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5