BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14870.1
Length=711
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946858 jgi|Araly1|946858|scaffold_703087.1 736 0.0
> Ahg946858 jgi|Araly1|946858|scaffold_703087.1
Length=579
Score = 736 bits (398), Expect = 0.0
Identities = 504/555 (91%), Gaps = 8/555 (1%)
Strand=Plus/Plus
Query 41 TTCCCAATTTCGAAAAATGTCACTAACCGCACAATTCTCGCCGCCGGTCACCGGAATAAC 100
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 8 TTCCCAATTTCGAAAAATGTCATTAACCGCACAATTCTCGCCGCCGGTCACCGGAATAAC 67
Query 101 CAGGAGTC-TCCGGGATACAAAACCGT-CACTGT-CTAATCTCCGTGTATTTCCGGTTTA 157
|||||| | | ||| || ||| | | ||| || || || ||||||||||||||||||
Sbjct 68 CAGGAG-CGTTCGGAATTTGAAATC-TCCACCGTCCT-CTCACCGTGTATTTCCGGTTTA 124
Query 158 CACTGAGATAAGAACT-ATGACGACGAGTAATCTGAGGAAATCGGCGTGTTTTGTGGCTA 216
|||||| || |||||| || || ||| ||||| | ||||||| ||| | | |||||||
Sbjct 125 CACTGATATCAGAACTCCGGA-GATGAGAAATCTTAAGAAATCGTCGTATCTAGTGGCTA 183
Query 217 AGGCTATAGAACAGAGACGAGATACAGCTGGATCTGAATCGGAATCAGAAGCGACTCCGT 276
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 184 AGGCTATAGAACAGAGACGAGATACAGCTGGATCTGAATCGGAGTCAGAAGCGACTCCTT 243
Query 277 CACCGGCGGAAGAGAGTGGAAGCGGAGAAGATAAGGAAGTGGAGATTAGCGCGATAGGAG 336
||||||||||||||||||||| ||||| |||||||||||||||||||| ||| || ||||
Sbjct 244 CACCGGCGGAAGAGAGTGGAAACGGAGGAGATAAGGAAGTGGAGATTAACGCAATCGGAG 303
Query 337 CAGAGATAAAAGCAGCGATGGAGCAGAGGAAAACGGCGGAGGAAGAGAAAGGGAAGAACG 396
||||||||||||| |||||||||||||||||| | ||||||||||||||||| |||||||
Sbjct 304 CAGAGATAAAAGCGGCGATGGAGCAGAGGAAAGCAGCGGAGGAAGAGAAAGGAAAGAACG 363
Query 397 AGTTTCTTAGTGGAGTTGCGGAGGAAGTGAAGGAGATTGAGTGGCCGGCGTTTCAGAAAG 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 AGTTTCTTAGTGGAGTTGCGGAGGAAGTGAAGGAGATTGAGTGGCCGGCGTTTCAGAAAG 423
Query 457 TTCTCGGAACTACCGGCGTCGTGCTCGGTGTTATCGCTGGCTCTAGCGTCGTCTTGCTCA 516
|||||||||||||||||||||||||||||||||||||||| || ||| | || ||||| |
Sbjct 424 TTCTCGGAACTACCGGCGTCGTGCTCGGTGTTATCGCTGGTTCAAGCATTGTTTTGCTTA 483
Query 517 CTGTCAATTTCCTTTTGGCTGAACTCTCTGATCGAGTGTTCATCGGAAGAGGTGTTCAAG 576
| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 484 CCGTCAATTTCCTTTTGGCTGAACTCTCTGATCGTGTGTTCATCGGAAAAGGTGTTCAAG 543
Query 577 ACTTCTTCAGCTGAT 591
|||||||||| ||||
Sbjct 544 ACTTCTTCAGTTGAT 558
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26152321062
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5