BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G14890.1

Length=625
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg493404 jgi|Araly1|493404|fgenesh2_kg.7__2837__AT4G14890.1         736    0.0  


> Ahg493404 jgi|Araly1|493404|fgenesh2_kg.7__2837__AT4G14890.1
Length=560

 Score =  736 bits (398),  Expect = 0.0
 Identities = 467/501 (93%), Gaps = 1/501 (0%)
 Strand=Plus/Plus

Query  36   tctccgtctctctgtctctcatggcgactcttcctctcccgactcaaacttctacaatct  95
            |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  1    TCTCTGTCTCTCTGTCTCTCATGGCGACTCTTCCTCTCCCGACTCAAACTTCCACAATCT  60

Query  96   ctctcCCTAAACCTTATCTCTCCAATTCCTTCTCCTTCCCACTCCGTAACGCAACACTCT  155
            ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct  61   CTCTCCCTAAACCTTATCTTTCCAATTCCTTCTCCTTCCCACTCCGTAACGCAACATTCT  120

Query  156  CAACAACAACAAACCGCCGGAACTTTCTCACCACCGGAAGGATCATAGCTCGGGCATATA  215
            | |||||| |||| |||||||||||||||||| ||||||||||| |||||||| ||||||
Sbjct  121  CCACAACACCAAATCGCCGGAACTTTCTCACCGCCGGAAGGATCGTAGCTCGGTCATATA  180

Query  216  AAGTGGTGGTAGAGCACGACGGAAAGACGACTGAATTGGAAGTCGAACCAGACGAGACGA  275
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  AAGTGGTGGTGGAGCACGACGGAAAGACGACTGAATTGGAAGTCGAACCAGACGAGACGA  240

Query  276  TTCTATCTAAGGCTCTTGACTCTGGCCTTGACGTTCCCTACGACTGCAATCTCGGTGTTT  335
            || |||| ||||||||||| || ||||||||||||||||| ||||| || ||||| ||||
Sbjct  241  TTTTATCGAAGGCTCTTGAATCCGGCCTTGACGTTCCCTATGACTGTAACCTCGGCGTTT  300

Query  336  GTATGACTTGTCCAGCGAAACTCGTGACCGGAACGGTGGATCAAAGTGGTGGGATGCTAA  395
            ||||||||||||| |||||||||||| | |||||||||||||| || | |||||||||||
Sbjct  301  GTATGACTTGTCCGGCGAAACTCGTGGCTGGAACGGTGGATCAGAGCGATGGGATGCTAA  360

Query  396  GTGATGATGTGGTTGAACGTGGCTACACGCTTCTATGTGCTTCGTATCCAACTTCTGATT  455
            |||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  361  GTGAGGATGTGGTGGAACGTGGCTACGCGCTTCTATGTGCTTCGTATCCAACTTCTGATT  420

Query  456  GTCACATTAAGATGATCCCTGAGGAAGAACTCTTGTCTCTCCAGCTCGCCACTGCCAACG  515
            |||||||||||||||||||||||||||| || |||||||| ||||| |||||||||||||
Sbjct  421  GTCACATTAAGATGATCCCTGAGGAAGAGCTTTTGTCTCTTCAGCTTGCCACTGCCAACG  480

Query  516  ACTAATC-ATCTTCTTGATTT  535
            ||| ||| |||||||||||||
Sbjct  481  ACTGATCCATCTTCTTGATTT  501



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22873750200


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5