BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14900.1
Length=1934
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946855 jgi|Araly1|946855|scaffold_703084.1 2507 0.0
Ahg479762 jgi|Araly1|479762|fgenesh2_kg.3__2463__AT3G22440.1 1262 0.0
> Ahg946855 jgi|Araly1|946855|scaffold_703084.1
Length=1639
Score = 2507 bits (1357), Expect = 0.0
Identities = 1548/1642 (94%), Gaps = 6/1642 (0%)
Strand=Plus/Plus
Query 79 CACCGTACGATTAACCGGAGATGGAGTCTTCTCCCGATCCAGGAGAGTTGATTAAGTC-G 137
|||||| |||||||||||||||||||||||||||||||||||| |||||||| |||| |
Sbjct 1 CACCGTCCGATTAACCGGAGATGGAGTCTTCTCCCGATCCAGGTGAGTTGATCGAGTCAG 60
Query 138 TCTCAGCCGAGTTTCTTTGAGTTTCAGAAGCAGGCGTCTCTAATGACGAGCTGCAATCTT 197
|||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 61 -CTCAGCCGAGTTTCGTTGAATTTCAGAAGCAGACGTCTCTAATGACGAGCTGCAATCTT 119
Query 198 CTATGGAAAGAGCTCTCTGAGCATTTCACTTCCATGGAGCAAAACCTGATGAAGAAATCT 257
|||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||
Sbjct 120 CTATGGAAAGAGCTCTCTGAGCATTTCACTTCTATGGAGCAGAATCTGATGAAGAAATCT 179
Query 258 GAAGCTCTGAGACAGATGATTGAAACCCTAGATAATCAAACGCAGAGCTCGATTGAGTTA 317
|||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 180 GAAGCTTTGAAACAGATGATTGAAACCCTAGATAATCAAACGCAGAACTCGATTGAGTTA 239
Query 318 CTCAAGCATCGTGAGGTGACTATAGACCACAGCGTCGAGATCGCGGAGGGGAAAGTTGAG 377
||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 240 CTCAAGCATCGTGAGGTGACTATAGACCACAGCGTTGAGATCGCGGCTGGGAAAGTTGAG 299
Query 378 GAACGCGTTAGAGCGGCGTTGGATTCGCTGGAGAAAGCTAGAGACTGTGG-TGATGAAGA 436
||||| | |||||| ||||||||||| |||||||||||||||| | | || ||| || ||
Sbjct 300 GAACGAGCTAGAGCCGCGTTGGATTCACTGGAGAAAGCTAGAG-CCGCGGATGAGGACGA 358
Query 437 TACCGGAGAAGTCGACGACGGCGACGGGCTTTTATCGGCGCTGAAGTCGCTTTGTTTGAA 496
|| |||||| || ||||||||||||||| || ||||||||||||| ||||||||||||||
Sbjct 359 TAACGGAGAGGTTGACGACGGCGACGGGATTCTATCGGCGCTGAAATCGCTTTGTTTGAA 418
Query 497 GATGGACGCAAGAGGATTTTGGGGGTTTGTGATTGCGAGGAAGAAGGAATTGGAGAATCT 556
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 419 GATGGACGCAAGAGGATTTTGGGATTTTGTGATTGCGAGGAAGAAAGAATTGGAGAATCT 478
Query 557 CCGGTCACAGATTCCTGTGGCGTTGGTAGATTGTGTGGATCCGCCGAAGTTAGTACTTGA 616
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 479 CCGGTCACAGATTCCGGTGGCGTTGGTTGATTGTGTGGATCCGCCGAAGTTAGTACTTGA 538
Query 617 AGCTGTATCTGAGGTTTTTCCGGTGGATAAAAGAGGTGGTGGAGAGAAAGTGAGCAATGA 676
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 539 AGCTGTATCTGAGGTTTTTCCGGTGGATAAAAGAGGCGGTGGAGAGAAAGTGAGCAACGA 598
Query 677 TTTTGGATGGGCTTGTGTTGTGATTCTGGAGAGTTTGATTCCAGTTATGGTTGATCCAGT 736
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 599 TTTTGGATGGGCTTGTGTGGTGATTCTTGAGAGTTTGATTCCAGTTATGGTTGATCCAGT 658
Query 737 GATGGGGAAGTCTCGGCTACTTGTAACTCCTAGCGTTAAGGAGAAAGCTAAAGAGATTGC 796
|||||||||||||||||| ||||||||||| ||||||||| |||||||||| ||||||||
Sbjct 659 GATGGGGAAGTCTCGGCTGCTTGTAACTCCGAGCGTTAAGAAGAAAGCTAAGGAGATTGC 718
Query 797 TGAGACGTGGAAGGCTAGCTTGGAAGAGAGAGGAGGGATTGAGAATGTGAAAACACCTGA 856
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TGAGACGTGGAAGGCGAGCTTGGAAGAGAGAGGAGGGATTGAGAATGTGAAAACACCTGA 778
Query 857 TGTTCATACGTTTCTGCAACATCTTGTGACTTTTGGGATTGTGAAGAAGGATGATCTAGC 916
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 779 TGTTCATACGTTTCTGCAACATCTTGTGACATTTGGGATTGTGAAGAAGGATGATCTTGC 838
Query 917 TCTTTATAGGAAACTTGTGGTTGGTTCAGCTTGGCGTAAACAGATGCCAAAGCTTGCTGT 976
||| |||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 839 TCTCTATAGGAAGCTTGTGGTTGGATCAGCTTGGCGTAAACAGATGCCTAAGCTTGCTGT 898
Query 977 TTCAGTTGGTTTGGGCGACCAAATGCCTGATATGATTGAAGAGTTGATAATCAGGGGACA 1036
||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 899 TTCAGTTGGTTTGGGTGACCAAATGCCTGATATGATAGAAGAGTTGATCTTCAGGGGACA 958
Query 1037 ACAGCTTGATGCGGTTCATTTCACTTTTGAAGTTGGTCTTGTACACTTGTTCCCTCCTGT 1096
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 959 ACAGCTTGATGCGGTTCATTTCACTTTTGAAGTTGGTCTTGTGCACAAATTCCCTCCTGT 1018
Query 1097 TCCTTTGCTCAAAGCTTATCTGAGGGATGCAAAGAAAGCTACAGCTTTAATCACTGATGA 1156
||||||||| ||||||||||||||||||||||||||||| |||||||||||||| || ||
Sbjct 1019 TCCTTTGCTTAAAGCTTATCTGAGGGATGCAAAGAAAGCAACAGCTTTAATCACAGAGGA 1078
Query 1157 TTCCAACAATTCTGGCCGATCTGCGCATCTTGTGGCGCGCAAAGAGCAATCAGCACTTAG 1216
||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1079 GTCCAACAATCCTGGCCGATCTGCGCATCTTGTGGCGCGCAAGGAGCAATCAGCACTCAG 1138
Query 1217 AGCAGTCTTAAAATGCATAGAAGAATACAAACTCGAGGAAGAATTCCCACCCGAGAATCT 1276
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1139 AGCAGTCTTAAAATGCATAGAAGAATACAAACTCGAGGAAGAATTCCCGCCCGAGAATCT 1198
Query 1277 CAAGAAGAGGTTGGATCAGCTAGAGAAGACCAAAACCGAGAAGAGAAAACCAGCCGTGAT 1336
||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1199 CAAGAAGCGGTTGGATCAGCTAGAGAAGACCAAAACCGAGAAGAGAAAACCAGCAGCAAT 1258
Query 1337 TCCCGCCAACAAGAGAACCCGAGCAAGCTACAGCGGTCCAATGCCACCAGCCAAAGCAGG 1396
||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 1259 TCCTGCCAACAAGAGAACCCGAGCGAGCTACAACGGTCCAATGCCACCAGCCAAAGCAGG 1318
Query 1397 GCGTATCACAAACGCTTACGTCTCCTCTTTCCCACCGCCTCCACCAACATTCATCAGATC 1456
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1319 GCGTATCACAAACGCTTACGTCTCCTCCTTCCCACCGCCTCCACCAACATTCATCAGATC 1378
Query 1457 CCAAAGTCACTCACCTCAATACGGTGTACCAGCATACACCACATCCCCACCTACCATCTA 1516
|| ||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 1379 CCCAAGCCACTCACCTCAGTACGGTGTACCAGCATACACCACATCCTCACCTACCATCTA 1438
Query 1517 CAGCAACAGGAGCCCTCCATACCAATACTCACCCGAGGCGGTTCATGGTTCTTACCAAAC 1576
||||||||||||||||||||||||||||||||||||||| ||||| || || ||||||
Sbjct 1439 CAGCAACAGGAGCCCTCCATACCAATACTCACCCGAGGCAGTTCACGGGTCATACCAAGT 1498
Query 1577 CTCTCCGGTCAGTTATCCGA-CAGCATATGGTACCTACTGCAGTCCGGTGGCTGCTCCAC 1635
||||| ||||||||||| | ||||||||||||| |||||||||||||||||||||||||
Sbjct 1499 TTCTCCTGTCAGTTATCC-AGCAGCATATGGTACTTACTGCAGTCCGGTGGCTGCTCCAC 1557
Query 1636 CCCCTCCAGTTTACCATCCTCACCCGCACCACCACCACCATATTCAGCATGCTTACTACT 1695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 CCCCTCCAGTTTACCATCCTCACCCGCACCACCACCACCATATTCAGCATGCTTACTACT 1617
Query 1696 GATTAGACAATGACAAAGGAAA 1717
||||||||||||||||||||||
Sbjct 1618 GATTAGACAATGACAAAGGAAA 1639
> Ahg479762 jgi|Araly1|479762|fgenesh2_kg.3__2463__AT3G22440.1
Length=1983
Score = 1262 bits (683), Expect = 0.0
Identities = 1332/1632 (82%), Gaps = 98/1632 (6%)
Strand=Plus/Plus
Query 93 CCGGAGATGGAGTC-TTCTCCCGATCCAGGAGAGTTGATTAAG-TCGTCTCAGCCGAGTT 150
|||| ||||| ||| || ||||||||||| ||||||| | || | | ||||||||||||
Sbjct 90 CCGGCGATGGGGTCAGTC-CCCGATCCAGGCGAGTTGACTGAGTTAG-CTCAGCCGAGTT 147
Query 151 TCTTTGAGTTTCAGAAGCAGGCGTC-TCTAATGACGAGCTGCAATCTTCTATGGAAAGAG 209
|| ||||||||||| ||| |||| | | ||||| ||||| | |||||||||| |||||
Sbjct 148 TCGAGGAGTTTCAGAAACAGACGTCGT-TGATGACAAGCTGTACTCTTCTATGGCAAGAG 206
Query 210 CTCTCTGAGCATTTCACTTCCATGGAGCAAAACCTGATGAAGAAATCTGAAGC-TCTG-A 267
||||| || || |||||||| | || || || |||||||||||||||||||| | || |
Sbjct 207 CTCTCCGATCACTTCACTTCTTTAGAACAGAATCTGATGAAGAAATCTGAAGCGT-TGAA 265
Query 268 GACAGATGATTGAAACCCTAGATAATCAAACGCAGAGCTCGATTGAGT-TACTCAAGCAT 326
| |||||||||||||| ||||| ||||| || |||| |||| |||||| | || |||| |
Sbjct 266 G-CAGATGATTGAAACGCTAGACAATCAGACTCAGACCTCGCTTGAGTCT-CTGAAGCGT 323
Query 327 CGTGAGGTGACTATAGACCACAGCGTCGAGATCGCGGAGGGGAAAGTTGAGGAACGCGTT 386
| ||||| || || ||||| ||||| ||||||| | |||||||||| |||||| | |
Sbjct 324 AGAGAGGTAACAATCGACCATAGCGTTGAGATCGTAGCTGGGAAAGTTGGGGAACGAGCT 383
Query 387 AGAGCGGCGT-TGGATTCGCTGGAGAAAGCTAGAGACT-GTGGTGAT-G----AA-GAT- 437
||||| || | | || ||| | |||||||||||||| | |||||||| | || |||
Sbjct 384 AGAGCTGC-TCTTGAATCGTTAGAGAAAGCTAGAGA-TGGTGGTGATGGTTCTAATGATG 441
Query 438 A--CCGGAGAAGTCGACGACGGCGACGGGCTTTTATCGGCGCTGAAGTCGCTTTGT-TTG 494
| |||| || || ||||| | || |||||| | || ||| |||| || || ||| ||
Sbjct 442 ATTCCGGTGAGGTTGACGATGAAGAAGGGCTTCTCTCTGCGTTGAAATCTCTATGTCTT- 500
Query 495 AAGATGGACGCAAGAGGATTTTGGGGGTTTGTGATTGCGAGGAAGAAGGAATTGGAGAAT 554
|| |||||||| ||||| |||||| ||||||| ||||||||||||||||||||||||
Sbjct 501 AAAATGGACGCGAGAGGGTTTTGGAACTTTGTGACGGCGAGGAAGAAGGAATTGGAGAAT 560
Query 555 CTCCGGTCACAGATTCCTGTGGCGTTGGTAGATTGTGTGGATCCGCCGAAGTTAGTACTT 614
||||||||| | ||||| | ||||||||| |||||||| |||||| ||| |||||| |||
Sbjct 561 CTCCGGTCAAAAATTCCGGCGGCGTTGGTTGATTGTGTAGATCCGGCGATGTTAGTGCTT 620
Query 615 GAAGCTG-TATCTGAGGTTTTTCCGGTGGATAAAAGAGGTGGTGGAGAGAAAGTGAGCAA 673
||||| | ||||||||||||||||||||||||||||| | |||| ||| |||||||
Sbjct 621 GAAGC-GATATCTGAGGTTTTTCCGGTGGATAAAAGA-----T-GAGATAAAATGAGCAA 673
Query 674 TGATTTTGGATGGGCTTGTGTTGTGATTCTGGAGAGTTTGATTCCAGTTATGGTTGATCC 733
||||| |||||||||||||||||||||||| |||||||| | || || |||||||||||
Sbjct 674 TGATTATGGATGGGCTTGTGTTGTGATTCTAGAGAGTTTAACACCTGTAATGGTTGATCC 733
Query 734 AGTGATGGGGAAGTCTCGGCTACTTGTAACTCCTAGCGTTAAGGAGAAAGCTAAAGAGAT 793
|||||| ||||| || || | ||||| ||||| |||||||||||||| ||||| |||||
Sbjct 734 AGTGATCGGGAAATCGAGGTTGCTTGTTACTCCGAGCGTTAAGGAGAAGGCTAAGGAGAT 793
Query 794 TGCTGAGACGTGGAAGGCTAGCTTGGAAGAGAGAGGAGGGATTGAGAATGTGAAAACACC 853
||||||||||||||||| |||||||||||||||||| |||| ||||||||||| || ||
Sbjct 794 AGCTGAGACGTGGAAGGCGAGCTTGGAAGAGAGAGGAAGGATAGAGAATGTGAAGACTCC 853
Query 854 TGATGTTCATACGTTTCTGCAACATCTTGTGACTTTTGGGATTGTGAAGAAG-GATGATC 912
||||||||||||||||||||| |||||||| || ||||| ||||| || ||| || ||||
Sbjct 854 TGATGTTCATACGTTTCTGCAGCATCTTGTTACATTTGGAATTGTTAA-AAGTGAAGATC 912
Query 913 TAGCTCTT-TATAGGAAA-CTTGTGGTTGGTTCAGCTTGGCGTAAACAGATGCCAAAGCT 970
| ||| || |||| |||| ||||| ||||| || || ||||||||||||||||| |||||
Sbjct 913 TTGCT-TTGTATA-GAAAGCTTGTCGTTGGATCTGCGTGGCGTAAACAGATGCCTAAGCT 970
Query 971 TGCTGTTTCAGTTGGTTTGGGCGACCAAATGCCTGATATGATTGAAGAGTTGATAATCAG 1030
||||||||| ||||||||||| || ||||||||||| ||||||||||| || || | |||
Sbjct 971 TGCTGTTTCTGTTGGTTTGGGTGATCAAATGCCTGACATGATTGAAGAATTAATCAGCAG 1030
Query 1031 GGGACAACAGCTTGATGCGGTTCATTTCACTTTTGAAGTTGGTCTTGTACACT-TGTTCC 1089
|||||||||||||||||| |||||||| |||| |||||| |||||||| | | ||| |
Sbjct 1031 GGGACAACAGCTTGATGCTGTTCATTTTACTTATGAAGTGGGTCTTGTGGA-TAAGTTTC 1089
Query 1090 CTCCTGTTCCTTTGCTCAAAGCTTATCTGAGGGATGCAAAGAAAGCT-A-CAGCTT-TAA 1146
|||||||||||||||||||||||||||| ||||| |||||| ||| | | |||||| | |
Sbjct 1090 CTCCTGTTCCTTTGCTCAAAGCTTATCTAAGGGACGCAAAG-AAG-TCAGCAGCTTCT-A 1146
Query 1147 TCACT-GATGATTCCAACAATTCTGGCCGATCTGCGCATCTTGTGGCGCGCAAAGAGCAA 1205
||| | || || || | |||| |||||||| || ||||||| ||||||||||| ||||||
Sbjct 1147 TCA-TGGAGGACTCTAGCAATACTGGCCGAGCTACGCATCTCGTGGCGCGCAAGGAGCAA 1205
Query 1206 TCAGCACTT-AGAGCAGTCTTAAAATGCATAGAAGAATACAAACTCGAGGAAGAATTCCC 1264
||||||||| || || ||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1206 TCAGCACTTAAG-GCGGTCTTGAAATGCATAGAAGAGTACAAACTCGAGGAAGAATTCCC 1264
Query 1265 ACCCGAGAATCTCAAGAAGAGGTTGGATCAGCTAGAGAAGACCAAAACCGAGAAGAGAAA 1324
|| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1265 TCCAGAGAACCTCAAGAAGCGGTTGGATCAGCTAGAGAAGACCAAAACCGAGAAGAGAAA 1324
Query 1325 ACCAGCCG-TGATTCCCGCCAACAAGAGAACCCGAGCAAGCTACAGCGGTCCAATGCCAC 1383
|||||| | || | || || ||||||||||||||||| || |||| ||||||||||||||
Sbjct 1325 ACCAGCAGCTG-TGCCTGCAAACAAGAGAACCCGAGCCAGTTACAACGGTCCAATGCCAC 1383
Query 1384 CAGCCAAAGCAGGGCGTATCACAAACGCTTACGTCTCCTCTTTCCCACCGCCTCCACCAA 1443
|||||||||| ||||||||||||||||| |||||||| || ||||| |
Sbjct 1384 CAGCCAAAGCCGGGCGTATCACAAACGCATACGTCTCTTCCTTCCC------T------- 1430
Query 1444 CATTCATCAGATC-CCAAAGTCACTCACCTCAATACGGTGT-ACCAGCA--TACACCACA 1499
||||||||||| || |||||| |||||||||| | | ||||||| | ||| ||
Sbjct 1431 --TTCATCAGATCACCCTC-TCACTCTCCTCAATACGCT-TCACCAGCAGCTT-ACC-CA 1484
Query 1500 TCCCCACCTACCA---TCTACAGCAACAGGAGCCCTCCATA-CCAATACTCACCCGAGG- 1554
||||||||||||| ||||||||||||| ||||| || || ||| ||||| |||||
Sbjct 1485 TCCCCACCTACCACAGTCTACAGCAACAGAAGCCCACCTTATCCA-TACTCTCCCGAAAT 1543
Query 1555 CGGTTC-ATGGTTCTTACCAAACCTCTCCGGTCAGTTATCCGACAGCATATGGTAC--CT 1611
| | | | || || |||||| |||||| || |||| || ||||||| || ||
Sbjct 1544 CA-TCCCA-GGCTCATACCAAGGCTCTCCTATCGGTTA-CC--CAGCATACA--ACGGCT 1596
Query 1612 ACTGCA--G-TCCGGTGGCTGCTCCACCCCCTCCAGTTTACCATCCTCACCCGCACCACC 1668
| |||| | ||| || |||||||| | ||||| |||||||| || |||| || || |
Sbjct 1597 ATTGCAATGGTCCAGTTCCTGCTCCAGCTCCTCCTGTTTACCACCCGCACCATCATCAAC 1656
Query 1669 ACCACCATATTC 1680
||||||| ||||
Sbjct 1657 ACCACCA-ATTC 1667
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72676187460
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5