BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G14905.1 Length=1404 Score E Sequences producing significant alignments: (Bits) Value Ahg493402 jgi|Araly1|493402|fgenesh2_kg.7__2835__AT4G14905.1 346 3e-94 > Ahg493402 jgi|Araly1|493402|fgenesh2_kg.7__2835__AT4G14905.1 Length=1093 Score = 346 bits (187), Expect = 3e-94 Identities = 254/286 (89%), Gaps = 5/286 (2%) Strand=Plus/Plus Query 191 AACTTCAGGCGTTTAATGGCTTCGCCGGAGATCTACATCGAACGGTCAGTAATTCGTCGC 250 ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| | | Sbjct 85 AACTTCAGGCGTTTAATCGCTTCGCCAGAGATCTACATCGAACGGTCAGTAATTCGCCTC 144 Query 251 ACTGAAAATATCCTCTATGTTGCAATTAGATCAGAAGCTACAAAAACCCTTAGCTGGTAC 310 |||||| ||||||||||||| |||||||||||| |||||||||||||||||| ||||||| Sbjct 145 ACTGAACATATCCTCTATGTAGCAATTAGATCACAAGCTACAAAAACCCTTACCTGGTAC 204 Query 311 ACACTCAATCTAAAACCCTTTGGAACAACAGAGATTAGCCATAGATTAGTTCCGGTTCCA 370 ||||||||| ||||||||||||||||||| || ||||||||||||||||| | ||||| Sbjct 205 ACACTCAATTTAAAACCCTTTGGAACAACGGATATTAGCCATAGATTAGTAGAG-TTCCA 263 Query 371 TCATTCCCTTCAATTCCTGGATATGGAACAACTATTATCTC-GTCCGGTTCTGAAACTT- 428 |||||||||||||||||||||| ||||||||| |||||| | | || ||||||| | || Sbjct 264 TCATTCCCTTCAATTCCTGGATTTGGAACAACGATTATCGCTG-CCAGTTCTGAGA-TTG 321 Query 429 ACGTCATTGGTGGATGCATTGACGGAGAATTAGTCTCTACTGTGTC 474 ||||||||||||||| || | |||||||| ||||| ||| |||| Sbjct 322 ACGTCATTGGTGGATATATCAATGGAGAATTTGTCTCCACTTTGTC 367 Score = 292 bits (158), Expect = 4e-78 Identities = 193/209 (92%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 922 GCTTCAAAGTTGTACAGGTAGAATGGTGAATCATGGTGGACGACTTGCAATTCTGTTTAA 981 |||| || |||||||||||| ||| ||||||||||||||| ||||||||||||| ||||| Sbjct 678 GCTTGAAGGTTGTACAGGTACAATTGTGAATCATGGTGGAAGACTTGCAATTCTATTTAA 737 Query 982 GAAGTCTCCAACAGAAATTTGGCGTACAGAGATTGCAATAGAGAGGGCAGAAGAAGGAGG 1041 |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| Sbjct 738 GAAGTCTCCAACAGAAATTTGGTGTACAGAGATTGCAATGGAGAGGGCAGAAGAAGGAGG 797 Query 1042 ATATATTAGTGGGAAGTTCTTGTGGTCTAATCATGTGCTTACTTTGACAGATTCCTTCAT 1101 || |||||||||| | |||||||||||||||||||||||||||||||||||||||| Sbjct 798 ATGTATTAGTGGG--G----TGTGGTCTAATCATGTGCTTACTTTGACAGATTCCTTCAT 851 Query 1102 CATTGAACGAGCTCTAGCTGTAACAGTTT 1130 |||||||||||||||| |||||||||||| Sbjct 852 CATTGAACGAGCTCTAACTGTAACAGTTT 880 Score = 211 bits (114), Expect = 1e-53 Identities = 174/202 (86%), Gaps = 8/202 (4%) Strand=Plus/Plus Query 677 GAGCAAATGAACTTCTTTGTGATGAATGATAAGATCTATAGAATAGGTCAGAATACTATG 736 |||||| |||||| |||||| |||||||||||||| |||||||| |||||||| ||||| Sbjct 478 GAGCAAGTGAACTGCTTTGTAATGAATGATAAGATTTATAGAATGGGTCAGAAGACTATT 537 Query 737 TTTGTTTACGATCCGAAAAAGGGTAGATTCGAGGAAGACTTGGCGTTGGGAA-G-ATTAT 794 |||||||||||||||||||||||||||||||||||||||||| ||||| || | ||||| Sbjct 538 TTTGTTTACGATCCGAAAAAGGGTAGATTCGAGGAAGACTTGACGTTG--AATGCATTAT 595 Query 795 GGTTCAACGAATCTTGCCCTATAGATAACGTGTTGTACGGCTTTTAT-T-GCATGAACCA 852 || |||| | | |||||| || |||||| |||||||||| |||||| | | | || ||| Sbjct 596 GGATCAAGGGTTGTTGCCCAATTGATAACATGTTGTACGGTTTTTATCTCG-A-GAGCCA 653 Query 853 AATACTTGCGTACGATTTAGTT 874 |||| ||||||| ||||||||| Sbjct 654 AATATTTGCGTATGATTTAGTT 675 Score = 191 bits (103), Expect = 1e-47 Identities = 118/125 (94%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 491 TCTCACAC-TTGTCGCTTCCTCCCTAACATGAAGGAGCCACGTAAATGCGCCGCCGTGGG 549 |||| ||| |||||||||||| ||||||||||||||||| |||||||||| ||||||||| Sbjct 355 TCTC-CACTTTGTCGCTTCCTTCCTAACATGAAGGAGCCTCGTAAATGCGTCGCCGTGGG 413 Query 550 ATTGATCGACGGGAAATTATATGTTGTCGGAGGTTGTAACGCTCCGTCTTTGAGTTGGGT 609 |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| Sbjct 414 ATTGATCGACGGGAAATTATATGTTGTCAGAGGTTGTAACGCTCCGTCTTTGAATTGGGT 473 Query 610 CGAGG 614 ||||| Sbjct 474 CGAGG 478 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52488357610 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5