BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14905.1
Length=1404
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493402 jgi|Araly1|493402|fgenesh2_kg.7__2835__AT4G14905.1 346 3e-94
> Ahg493402 jgi|Araly1|493402|fgenesh2_kg.7__2835__AT4G14905.1
Length=1093
Score = 346 bits (187), Expect = 3e-94
Identities = 254/286 (89%), Gaps = 5/286 (2%)
Strand=Plus/Plus
Query 191 AACTTCAGGCGTTTAATGGCTTCGCCGGAGATCTACATCGAACGGTCAGTAATTCGTCGC 250
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| | |
Sbjct 85 AACTTCAGGCGTTTAATCGCTTCGCCAGAGATCTACATCGAACGGTCAGTAATTCGCCTC 144
Query 251 ACTGAAAATATCCTCTATGTTGCAATTAGATCAGAAGCTACAAAAACCCTTAGCTGGTAC 310
|||||| ||||||||||||| |||||||||||| |||||||||||||||||| |||||||
Sbjct 145 ACTGAACATATCCTCTATGTAGCAATTAGATCACAAGCTACAAAAACCCTTACCTGGTAC 204
Query 311 ACACTCAATCTAAAACCCTTTGGAACAACAGAGATTAGCCATAGATTAGTTCCGGTTCCA 370
||||||||| ||||||||||||||||||| || ||||||||||||||||| | |||||
Sbjct 205 ACACTCAATTTAAAACCCTTTGGAACAACGGATATTAGCCATAGATTAGTAGAG-TTCCA 263
Query 371 TCATTCCCTTCAATTCCTGGATATGGAACAACTATTATCTC-GTCCGGTTCTGAAACTT- 428
|||||||||||||||||||||| ||||||||| |||||| | | || ||||||| | ||
Sbjct 264 TCATTCCCTTCAATTCCTGGATTTGGAACAACGATTATCGCTG-CCAGTTCTGAGA-TTG 321
Query 429 ACGTCATTGGTGGATGCATTGACGGAGAATTAGTCTCTACTGTGTC 474
||||||||||||||| || | |||||||| ||||| ||| ||||
Sbjct 322 ACGTCATTGGTGGATATATCAATGGAGAATTTGTCTCCACTTTGTC 367
Score = 292 bits (158), Expect = 4e-78
Identities = 193/209 (92%), Gaps = 6/209 (3%)
Strand=Plus/Plus
Query 922 GCTTCAAAGTTGTACAGGTAGAATGGTGAATCATGGTGGACGACTTGCAATTCTGTTTAA 981
|||| || |||||||||||| ||| ||||||||||||||| ||||||||||||| |||||
Sbjct 678 GCTTGAAGGTTGTACAGGTACAATTGTGAATCATGGTGGAAGACTTGCAATTCTATTTAA 737
Query 982 GAAGTCTCCAACAGAAATTTGGCGTACAGAGATTGCAATAGAGAGGGCAGAAGAAGGAGG 1041
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 738 GAAGTCTCCAACAGAAATTTGGTGTACAGAGATTGCAATGGAGAGGGCAGAAGAAGGAGG 797
Query 1042 ATATATTAGTGGGAAGTTCTTGTGGTCTAATCATGTGCTTACTTTGACAGATTCCTTCAT 1101
|| |||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 798 ATGTATTAGTGGG--G----TGTGGTCTAATCATGTGCTTACTTTGACAGATTCCTTCAT 851
Query 1102 CATTGAACGAGCTCTAGCTGTAACAGTTT 1130
|||||||||||||||| ||||||||||||
Sbjct 852 CATTGAACGAGCTCTAACTGTAACAGTTT 880
Score = 211 bits (114), Expect = 1e-53
Identities = 174/202 (86%), Gaps = 8/202 (4%)
Strand=Plus/Plus
Query 677 GAGCAAATGAACTTCTTTGTGATGAATGATAAGATCTATAGAATAGGTCAGAATACTATG 736
|||||| |||||| |||||| |||||||||||||| |||||||| |||||||| |||||
Sbjct 478 GAGCAAGTGAACTGCTTTGTAATGAATGATAAGATTTATAGAATGGGTCAGAAGACTATT 537
Query 737 TTTGTTTACGATCCGAAAAAGGGTAGATTCGAGGAAGACTTGGCGTTGGGAA-G-ATTAT 794
|||||||||||||||||||||||||||||||||||||||||| ||||| || | |||||
Sbjct 538 TTTGTTTACGATCCGAAAAAGGGTAGATTCGAGGAAGACTTGACGTTG--AATGCATTAT 595
Query 795 GGTTCAACGAATCTTGCCCTATAGATAACGTGTTGTACGGCTTTTAT-T-GCATGAACCA 852
|| |||| | | |||||| || |||||| |||||||||| |||||| | | | || |||
Sbjct 596 GGATCAAGGGTTGTTGCCCAATTGATAACATGTTGTACGGTTTTTATCTCG-A-GAGCCA 653
Query 853 AATACTTGCGTACGATTTAGTT 874
|||| ||||||| |||||||||
Sbjct 654 AATATTTGCGTATGATTTAGTT 675
Score = 191 bits (103), Expect = 1e-47
Identities = 118/125 (94%), Gaps = 2/125 (2%)
Strand=Plus/Plus
Query 491 TCTCACAC-TTGTCGCTTCCTCCCTAACATGAAGGAGCCACGTAAATGCGCCGCCGTGGG 549
|||| ||| |||||||||||| ||||||||||||||||| |||||||||| |||||||||
Sbjct 355 TCTC-CACTTTGTCGCTTCCTTCCTAACATGAAGGAGCCTCGTAAATGCGTCGCCGTGGG 413
Query 550 ATTGATCGACGGGAAATTATATGTTGTCGGAGGTTGTAACGCTCCGTCTTTGAGTTGGGT 609
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 414 ATTGATCGACGGGAAATTATATGTTGTCAGAGGTTGTAACGCTCCGTCTTTGAATTGGGT 473
Query 610 CGAGG 614
|||||
Sbjct 474 CGAGG 478
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52488357610
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5