BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G14910.2 Length=1276 Score E Sequences producing significant alignments: (Bits) Value Ahg946852 jgi|Araly1|946852|scaffold_703081.1 1166 0.0 Ahg479759 jgi|Araly1|479759|fgenesh2_kg.3__2460__AT3G22425.2 708 0.0 Ahg891070 jgi|Araly1|891070|Al_scaffold_0007_3056 649 0.0 Ahg891062 jgi|Araly1|891062|Al_scaffold_0007_3048 649 0.0 > Ahg946852 jgi|Araly1|946852|scaffold_703081.1 Length=859 Score = 1166 bits (631), Expect = 0.0 Identities = 743/796 (93%), Gaps = 11/796 (1%) Strand=Plus/Plus Query 9 CATGGAGTTGCTCTCTTCTTCACCGGCTCAGCTTCTGAGACCAAATCTCAGCTCTAGGGC 68 |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 23 CATGGAGTTGCTCTCTTCATCACCGGCTCAGCTTCTGAGACCAAATCTCAGCTCTAGGGT 82 Query 69 TTTGCTTCCTCCACGAACATCAATCGCTTCTTCTCATCC-TCCTCCTCCTCGATTCCT-- 125 ||| | ||||||||||||||||||||||| | | |||| | ||||||||||||||| Sbjct 83 TTTACAACCTCCACGAACATCAATCGCTTC-T-T-ATCCAT-TTCCTCCTCGATTCCTAC 138 Query 126 GGTAATGAATTCTCAATCTCAGCATCGTCC-ATCTATCTCCTGCGCTTCGCCTCCTCCCG 184 || ||| ||||||||||||||||||| || |||||||||||||||||| ||||||||| Sbjct 139 GG--ATGGATTCTCAATCTCAGCATCG-CCAATCTATCTCCTGCGCTTCTTCTCCTCCCG 195 Query 185 GAGATAACGGTTTTCCGGCGATTACCACGGCTTCACCCATCGAATCAGCTCGAATAGGTG 244 ||| |||||||||||||||||||||||| ||||| || |||||||||||||||||||||| Sbjct 196 GAGGTAACGGTTTTCCGGCGATTACCACCGCTTCTCCAATCGAATCAGCTCGAATAGGTG 255 Query 245 AAGTGAAGAGAGAAACAAAGGAAACAAATGTATCAGTGAAGATTAATTTGGATGGTCATG 304 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct 256 AAGTGAAGAGAGAAACAAAGGAAACAAATGTATCAGTGAAGCTTAATTTGGATGGTAATG 315 Query 305 GAGTTTCAGATAGCTCCACTGGAATCCCTTTCCTTGATCATATGTTAGATCAACTTGCTT 364 |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 316 GAGTTTCAGATAGCTCCACTGGGATTGCTTTCCTTGATCATATGTTAGATCAACTTGCTT 375 Query 365 CACATGGCTTGTTCGATGTACACGTAAGAGCTACTGGTGATACTCACATTGATGATCATC 424 ||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||| Sbjct 376 CACATGGATTGTTCGATGTACACGTAAGAGCTACTGGTGATATTCATATTGATGATCATC 435 Query 425 ATACTAATGAAGATGTTGCTCTTGCCATTGGAACTGCTTTGTTAAAGGCACTTGGGGAAC 484 |||| |||||||||||||| |||||||||||||| |||||||| |||||||||||||| | Sbjct 436 ATACGAATGAAGATGTTGCGCTTGCCATTGGAACAGCTTTGTTGAAGGCACTTGGGGAGC 495 Query 485 GGAAAGGGATTAATCGTTTTGGCGATTTTACAGCTCCTCTTGATGAAGCACTCATACATG 544 ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 496 GGAAAGGGATTAACCGTTTTGGCGATTTTACAGCTCCTCTTGATGAAGCACTTATACATG 555 Query 545 TTTCCCTGGATCTATCTGGTAGACCATATCTTGGATACAACTTAGAGATTCCAACGCAGA 604 |||||||||||||||||||| |||| |||||||| ||||| |||||||||||||| |||| Sbjct 556 TTTCCCTGGATCTATCTGGTCGACCGTATCTTGGCTACAATTTAGAGATTCCAACCCAGA 615 Query 605 GAGTAGGAACATACGACACTCAGTTGGTGGAACACTTCTTCCAGTCATTGGTGAATACTT 664 ||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||| Sbjct 616 GAGTAGGAACATACGACACTCAGTTGGTGGAGCATTTCTTCCAGTCATTAGTGAATACTT 675 Query 665 CTGGTATGACTCTTCACATCCGACAGCTTGCTGGTAAAAACTCGCATCACATAATAGAAG 724 |||||||||| |||||||||||||||||||||||||||||||| ||||| || ||||||| Sbjct 676 CTGGTATGACACTTCACATCCGACAGCTTGCTGGTAAAAACTCTCATCATATTATAGAAG 735 Query 725 CGACCTTTAAGGCCTTTGCAAGAGCTCTCCGACAAGCAACAGAGTCTGATCCACGCCGCG 784 |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| Sbjct 736 CGACCTTTAAGGCCTTTGCAAGGGCTCTCCGACAAGCAACAGAGTCTGATCCACGTCGCG 795 Query 785 GTGGGACAATACCAAG 800 |||||||||||||||| Sbjct 796 GTGGGACAATACCAAG 811 > Ahg479759 jgi|Araly1|479759|fgenesh2_kg.3__2460__AT3G22425.2 Length=1050 Score = 708 bits (383), Expect = 0.0 Identities = 517/582 (89%), Gaps = 8/582 (1%) Strand=Plus/Plus Query 223 ATCGAATCAGCTCGAATAGGTGAAGTGAAGAGAGAAACAAAGGAAACAAATGTATCAGTG 282 ||||||| ||||||||| || ||||| ||||||| |||||||||||| ||||| |||||| Sbjct 249 ATCGAATTAGCTCGAATTGGAGAAGTAAAGAGAGTAACAAAGGAAACGAATGTTTCAGTG 308 Query 283 AAGATTAATTTGGATGGTCA-TGGAGTTTCAGATAGCTCCACTGGAATCCCTTTCCTTGA 341 |||||||||||||||||| | ||||||| ||||||| || |||||||| ||||| ||||| Sbjct 309 AAGATTAATTTGGATGGT-ACTGGAGTTGCAGATAGTTCTACTGGAATTCCTTTTCTTGA 367 Query 342 TCATATGTTAGATCAACTTGCTTCACATGGCTTGTTCGATGTACACGTAAGAGCTACTGG 401 ||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||| Sbjct 368 CCATATGTTAGATCAACTTGCTTCACATGGCTTGTTTGATGTGCACGTTAGAGCTACTGG 427 Query 402 TGATACTCACATTGATGATCATCATACTAATGAAGATGTTGCTCTTGCCATTGGAACTGC 461 |||| |||||||||||||||||| |||||||||||| | ||||||||||||||||| || Sbjct 428 TGATGTTCACATTGATGATCATCACACTAATGAAGATATAGCTCTTGCCATTGGAACAGC 487 Query 462 T-TTGTTAAAGGCACTTGGGGAACGGAAAGGGATTAATCGTTTTGGCGATTTTACAGCTC 520 | || |||||||| ||||| || || ||||||||||| || ||||| || || ||||||| Sbjct 488 TCTT-TTAAAGGCCCTTGGTGAGCGTAAAGGGATTAACCGGTTTGGTGACTTCACAGCTC 546 Query 521 CTCTT-GATGAAGCACTCATACATGTTTCCCTGGATCTA-TCTGGTAGACCATATCTTGG 578 || || |||||||| || |||||||||||| |||| || |||||| ||||||||||||| Sbjct 547 CT-TTAGATGAAGCGCTTATACATGTTTCCTTGGA-CTTGTCTGGTCGACCATATCTTGG 604 Query 579 ATACAACTTAGAGATTCCAACGCAGAGAGTAGGAACATACGACACTCAGTTGGTGGAACA 638 |||||||| ||||||||||| |||||||| ||||| || ||||||||||||||||| || Sbjct 605 TTACAACTTGGAGATTCCAACCCAGAGAGTTGGAACTTATGACACTCAGTTGGTGGAGCA 664 Query 639 CTTCTTCCAGTCATTGGTGAATACTTCTGGTATGACTCTTCACATCCGACAGCTTGCTGG 698 |||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct 665 CTTCTTCCAGTCGTTGGTGAATACTTCTGGTATGACACTTCACATCCGGCAGCTTGCTGG 724 Query 699 TAAAAACTCGCATCACATAATAGAAGCGACCTTTAAGGCCTTTGCAAGAGCTCTCCGACA 758 | ||||||| |||||||||||||| |||||||||||||||||||| || ||||| ||||| Sbjct 725 TGAAAACTCTCATCACATAATAGAGGCGACCTTTAAGGCCTTTGCCAGGGCTCTACGACA 784 Query 759 AGCAACAGAGTCTGATCCACGCCGCGGTGGGACAATACCAAG 800 |||||||||| ||||||||| || |||||||| |||||||| Sbjct 785 AGCAACAGAGGATGATCCACGTCGTGGTGGGACGATACCAAG 826 > Ahg891070 jgi|Araly1|891070|Al_scaffold_0007_3056 Length=459 Score = 649 bits (351), Expect = 0.0 Identities = 415/446 (93%), Gaps = 4/446 (1%) Strand=Plus/Plus Query 355 CAACTTGCTTCACATGGCTTGTTCGATGTACACGTAAGAGCTACTGGTGATAC-TCACAT 413 ||||||||||||||||| |||||| ||||||| |||||||||||||||| | |||||| Sbjct 16 CAACTTGCTTCACATGGATTGTTCCATGTACATGTAAGAGCTACTGGTG-GCCTTCACAT 74 Query 414 TGATGATCATCATACTAATGAAGATGTTGCTCTTGCCATTGGAACTGCTTTGTTAAAGGC 473 |||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||| Sbjct 75 TGATGATCATCATACTAATGAAGATGTTGCTCTTGCTATTGGTACAGCTTTGTTAAAGGC 134 Query 474 ACTTGGGGAACGGAAAGGGATTAATCGTTTTGGCGATTTTACAGCTCCTCTTGATGAAGC 533 |||||| || |||||||||||||| ||||||||| ||||||||||||||||||||||||| Sbjct 135 ACTTGGTGATCGGAAAGGGATTAACCGTTTTGGCAATTTTACAGCTCCTCTTGATGAAGC 194 Query 534 ACTCATACATGTTTCCCTGGATCTATCTGGTAGACCATATCTTGGATACAA-CTTAGAGA 592 |||||||| ||| |||||| ||||||||||||||||||||||||| ||||| |||||||| Sbjct 195 ACTCATACGTGTGTCCCTG-ATCTATCTGGTAGACCATATCTTGGCTACAAACTTAGAGA 253 Query 593 TTCCAACGCAGAGAGTAGGAACATACGACACTCAGTTGGTGGAACACTTCTTCCAGTCAT 652 ||||||| ||||||||||||||||||||||| ||||||||||| || ||||||||||| | Sbjct 254 TTCCAACCCAGAGAGTAGGAACATACGACACACAGTTGGTGGAGCATTTCTTCCAGTCTT 313 Query 653 TGGTGAATACTTCTGGTATGACTCTTCACATCCGACAGCTTGCTGGTAAAAACTCGCATC 712 |||||||||||||||||||||| ||||||| |||||||||||| ||||||||||| |||| Sbjct 314 TGGTGAATACTTCTGGTATGACACTTCACACCCGACAGCTTGCCGGTAAAAACTCTCATC 373 Query 713 ACATAATAGAAGCGACCTTTAAGGCCTTTGCAAGAGCTCTCCGACAAGCAACAGAGTCTG 772 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 374 ACATAATAGAAGCGACCTTTAAGGCCTTTGCAAGGGCTCTCCGACAAGCAACAGAGTCTG 433 Query 773 ATCCACGCCGCGGTGGGACAATACCA 798 ||||||| |||||||| ||||||||| Sbjct 434 ATCCACGTCGCGGTGGAACAATACCA 459 > Ahg891062 jgi|Araly1|891062|Al_scaffold_0007_3048 Length=471 Score = 649 bits (351), Expect = 0.0 Identities = 415/446 (93%), Gaps = 4/446 (1%) Strand=Plus/Plus Query 355 CAACTTGCTTCACATGGCTTGTTCGATGTACACGTAAGAGCTACTGGTGATAC-TCACAT 413 ||||||||||||||||| |||||| ||||||| |||||||||||||||| | |||||| Sbjct 1 CAACTTGCTTCACATGGATTGTTCCATGTACATGTAAGAGCTACTGGTG-GCCTTCACAT 59 Query 414 TGATGATCATCATACTAATGAAGATGTTGCTCTTGCCATTGGAACTGCTTTGTTAAAGGC 473 |||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||| Sbjct 60 TGATGATCATCATACTAATGAAGATGTTGCTCTTGCTATTGGTACAGCTTTGTTAAAGGC 119 Query 474 ACTTGGGGAACGGAAAGGGATTAATCGTTTTGGCGATTTTACAGCTCCTCTTGATGAAGC 533 |||||| || |||||||||||||| ||||||||| ||||||||||||||||||||||||| Sbjct 120 ACTTGGTGAGCGGAAAGGGATTAACCGTTTTGGCAATTTTACAGCTCCTCTTGATGAAGC 179 Query 534 ACTCATACATGTTTCCCTGGATCTATCTGGTAGACCATATCTTGGATACAA-CTTAGAGA 592 |||||||| ||| |||||| ||||||||||||||||||||||||| ||||| |||||||| Sbjct 180 ACTCATACGTGTGTCCCTG-ATCTATCTGGTAGACCATATCTTGGCTACAAACTTAGAGA 238 Query 593 TTCCAACGCAGAGAGTAGGAACATACGACACTCAGTTGGTGGAACACTTCTTCCAGTCAT 652 ||||||| ||||||||||||||||||||||| ||||||||||| || ||||||||||| | Sbjct 239 TTCCAACCCAGAGAGTAGGAACATACGACACACAGTTGGTGGAGCATTTCTTCCAGTCTT 298 Query 653 TGGTGAATACTTCTGGTATGACTCTTCACATCCGACAGCTTGCTGGTAAAAACTCGCATC 712 |||||||||||||||||||||| ||||||| |||||||||||| ||||||||||| |||| Sbjct 299 TGGTGAATACTTCTGGTATGACACTTCACACCCGACAGCTTGCCGGTAAAAACTCTCATC 358 Query 713 ACATAATAGAAGCGACCTTTAAGGCCTTTGCAAGAGCTCTCCGACAAGCAACAGAGTCTG 772 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 359 ACATAATAGAAGCGACCTTTAAGGCCTTTGCAAGGGCTCTCCGACAAGCAACAGAGTCTG 418 Query 773 ATCCACGCCGCGGTGGGACAATACCA 798 ||||||| |||||||| ||||||||| Sbjct 419 ATCCACGTCGCGGTGGAACAATACCA 444 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47691769167 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5