BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14910.2
Length=1276
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946852 jgi|Araly1|946852|scaffold_703081.1 1166 0.0
Ahg479759 jgi|Araly1|479759|fgenesh2_kg.3__2460__AT3G22425.2 708 0.0
Ahg891070 jgi|Araly1|891070|Al_scaffold_0007_3056 649 0.0
Ahg891062 jgi|Araly1|891062|Al_scaffold_0007_3048 649 0.0
> Ahg946852 jgi|Araly1|946852|scaffold_703081.1
Length=859
Score = 1166 bits (631), Expect = 0.0
Identities = 743/796 (93%), Gaps = 11/796 (1%)
Strand=Plus/Plus
Query 9 CATGGAGTTGCTCTCTTCTTCACCGGCTCAGCTTCTGAGACCAAATCTCAGCTCTAGGGC 68
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 23 CATGGAGTTGCTCTCTTCATCACCGGCTCAGCTTCTGAGACCAAATCTCAGCTCTAGGGT 82
Query 69 TTTGCTTCCTCCACGAACATCAATCGCTTCTTCTCATCC-TCCTCCTCCTCGATTCCT-- 125
||| | ||||||||||||||||||||||| | | |||| | |||||||||||||||
Sbjct 83 TTTACAACCTCCACGAACATCAATCGCTTC-T-T-ATCCAT-TTCCTCCTCGATTCCTAC 138
Query 126 GGTAATGAATTCTCAATCTCAGCATCGTCC-ATCTATCTCCTGCGCTTCGCCTCCTCCCG 184
|| ||| ||||||||||||||||||| || |||||||||||||||||| |||||||||
Sbjct 139 GG--ATGGATTCTCAATCTCAGCATCG-CCAATCTATCTCCTGCGCTTCTTCTCCTCCCG 195
Query 185 GAGATAACGGTTTTCCGGCGATTACCACGGCTTCACCCATCGAATCAGCTCGAATAGGTG 244
||| |||||||||||||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct 196 GAGGTAACGGTTTTCCGGCGATTACCACCGCTTCTCCAATCGAATCAGCTCGAATAGGTG 255
Query 245 AAGTGAAGAGAGAAACAAAGGAAACAAATGTATCAGTGAAGATTAATTTGGATGGTCATG 304
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 256 AAGTGAAGAGAGAAACAAAGGAAACAAATGTATCAGTGAAGCTTAATTTGGATGGTAATG 315
Query 305 GAGTTTCAGATAGCTCCACTGGAATCCCTTTCCTTGATCATATGTTAGATCAACTTGCTT 364
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 316 GAGTTTCAGATAGCTCCACTGGGATTGCTTTCCTTGATCATATGTTAGATCAACTTGCTT 375
Query 365 CACATGGCTTGTTCGATGTACACGTAAGAGCTACTGGTGATACTCACATTGATGATCATC 424
||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 376 CACATGGATTGTTCGATGTACACGTAAGAGCTACTGGTGATATTCATATTGATGATCATC 435
Query 425 ATACTAATGAAGATGTTGCTCTTGCCATTGGAACTGCTTTGTTAAAGGCACTTGGGGAAC 484
|||| |||||||||||||| |||||||||||||| |||||||| |||||||||||||| |
Sbjct 436 ATACGAATGAAGATGTTGCGCTTGCCATTGGAACAGCTTTGTTGAAGGCACTTGGGGAGC 495
Query 485 GGAAAGGGATTAATCGTTTTGGCGATTTTACAGCTCCTCTTGATGAAGCACTCATACATG 544
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 496 GGAAAGGGATTAACCGTTTTGGCGATTTTACAGCTCCTCTTGATGAAGCACTTATACATG 555
Query 545 TTTCCCTGGATCTATCTGGTAGACCATATCTTGGATACAACTTAGAGATTCCAACGCAGA 604
|||||||||||||||||||| |||| |||||||| ||||| |||||||||||||| ||||
Sbjct 556 TTTCCCTGGATCTATCTGGTCGACCGTATCTTGGCTACAATTTAGAGATTCCAACCCAGA 615
Query 605 GAGTAGGAACATACGACACTCAGTTGGTGGAACACTTCTTCCAGTCATTGGTGAATACTT 664
||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||
Sbjct 616 GAGTAGGAACATACGACACTCAGTTGGTGGAGCATTTCTTCCAGTCATTAGTGAATACTT 675
Query 665 CTGGTATGACTCTTCACATCCGACAGCTTGCTGGTAAAAACTCGCATCACATAATAGAAG 724
|||||||||| |||||||||||||||||||||||||||||||| ||||| || |||||||
Sbjct 676 CTGGTATGACACTTCACATCCGACAGCTTGCTGGTAAAAACTCTCATCATATTATAGAAG 735
Query 725 CGACCTTTAAGGCCTTTGCAAGAGCTCTCCGACAAGCAACAGAGTCTGATCCACGCCGCG 784
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 736 CGACCTTTAAGGCCTTTGCAAGGGCTCTCCGACAAGCAACAGAGTCTGATCCACGTCGCG 795
Query 785 GTGGGACAATACCAAG 800
||||||||||||||||
Sbjct 796 GTGGGACAATACCAAG 811
> Ahg479759 jgi|Araly1|479759|fgenesh2_kg.3__2460__AT3G22425.2
Length=1050
Score = 708 bits (383), Expect = 0.0
Identities = 517/582 (89%), Gaps = 8/582 (1%)
Strand=Plus/Plus
Query 223 ATCGAATCAGCTCGAATAGGTGAAGTGAAGAGAGAAACAAAGGAAACAAATGTATCAGTG 282
||||||| ||||||||| || ||||| ||||||| |||||||||||| ||||| ||||||
Sbjct 249 ATCGAATTAGCTCGAATTGGAGAAGTAAAGAGAGTAACAAAGGAAACGAATGTTTCAGTG 308
Query 283 AAGATTAATTTGGATGGTCA-TGGAGTTTCAGATAGCTCCACTGGAATCCCTTTCCTTGA 341
|||||||||||||||||| | ||||||| ||||||| || |||||||| ||||| |||||
Sbjct 309 AAGATTAATTTGGATGGT-ACTGGAGTTGCAGATAGTTCTACTGGAATTCCTTTTCTTGA 367
Query 342 TCATATGTTAGATCAACTTGCTTCACATGGCTTGTTCGATGTACACGTAAGAGCTACTGG 401
||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||
Sbjct 368 CCATATGTTAGATCAACTTGCTTCACATGGCTTGTTTGATGTGCACGTTAGAGCTACTGG 427
Query 402 TGATACTCACATTGATGATCATCATACTAATGAAGATGTTGCTCTTGCCATTGGAACTGC 461
|||| |||||||||||||||||| |||||||||||| | ||||||||||||||||| ||
Sbjct 428 TGATGTTCACATTGATGATCATCACACTAATGAAGATATAGCTCTTGCCATTGGAACAGC 487
Query 462 T-TTGTTAAAGGCACTTGGGGAACGGAAAGGGATTAATCGTTTTGGCGATTTTACAGCTC 520
| || |||||||| ||||| || || ||||||||||| || ||||| || || |||||||
Sbjct 488 TCTT-TTAAAGGCCCTTGGTGAGCGTAAAGGGATTAACCGGTTTGGTGACTTCACAGCTC 546
Query 521 CTCTT-GATGAAGCACTCATACATGTTTCCCTGGATCTA-TCTGGTAGACCATATCTTGG 578
|| || |||||||| || |||||||||||| |||| || |||||| |||||||||||||
Sbjct 547 CT-TTAGATGAAGCGCTTATACATGTTTCCTTGGA-CTTGTCTGGTCGACCATATCTTGG 604
Query 579 ATACAACTTAGAGATTCCAACGCAGAGAGTAGGAACATACGACACTCAGTTGGTGGAACA 638
|||||||| ||||||||||| |||||||| ||||| || ||||||||||||||||| ||
Sbjct 605 TTACAACTTGGAGATTCCAACCCAGAGAGTTGGAACTTATGACACTCAGTTGGTGGAGCA 664
Query 639 CTTCTTCCAGTCATTGGTGAATACTTCTGGTATGACTCTTCACATCCGACAGCTTGCTGG 698
|||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 665 CTTCTTCCAGTCGTTGGTGAATACTTCTGGTATGACACTTCACATCCGGCAGCTTGCTGG 724
Query 699 TAAAAACTCGCATCACATAATAGAAGCGACCTTTAAGGCCTTTGCAAGAGCTCTCCGACA 758
| ||||||| |||||||||||||| |||||||||||||||||||| || ||||| |||||
Sbjct 725 TGAAAACTCTCATCACATAATAGAGGCGACCTTTAAGGCCTTTGCCAGGGCTCTACGACA 784
Query 759 AGCAACAGAGTCTGATCCACGCCGCGGTGGGACAATACCAAG 800
|||||||||| ||||||||| || |||||||| ||||||||
Sbjct 785 AGCAACAGAGGATGATCCACGTCGTGGTGGGACGATACCAAG 826
> Ahg891070 jgi|Araly1|891070|Al_scaffold_0007_3056
Length=459
Score = 649 bits (351), Expect = 0.0
Identities = 415/446 (93%), Gaps = 4/446 (1%)
Strand=Plus/Plus
Query 355 CAACTTGCTTCACATGGCTTGTTCGATGTACACGTAAGAGCTACTGGTGATAC-TCACAT 413
||||||||||||||||| |||||| ||||||| |||||||||||||||| | ||||||
Sbjct 16 CAACTTGCTTCACATGGATTGTTCCATGTACATGTAAGAGCTACTGGTG-GCCTTCACAT 74
Query 414 TGATGATCATCATACTAATGAAGATGTTGCTCTTGCCATTGGAACTGCTTTGTTAAAGGC 473
|||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||
Sbjct 75 TGATGATCATCATACTAATGAAGATGTTGCTCTTGCTATTGGTACAGCTTTGTTAAAGGC 134
Query 474 ACTTGGGGAACGGAAAGGGATTAATCGTTTTGGCGATTTTACAGCTCCTCTTGATGAAGC 533
|||||| || |||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 135 ACTTGGTGATCGGAAAGGGATTAACCGTTTTGGCAATTTTACAGCTCCTCTTGATGAAGC 194
Query 534 ACTCATACATGTTTCCCTGGATCTATCTGGTAGACCATATCTTGGATACAA-CTTAGAGA 592
|||||||| ||| |||||| ||||||||||||||||||||||||| ||||| ||||||||
Sbjct 195 ACTCATACGTGTGTCCCTG-ATCTATCTGGTAGACCATATCTTGGCTACAAACTTAGAGA 253
Query 593 TTCCAACGCAGAGAGTAGGAACATACGACACTCAGTTGGTGGAACACTTCTTCCAGTCAT 652
||||||| ||||||||||||||||||||||| ||||||||||| || ||||||||||| |
Sbjct 254 TTCCAACCCAGAGAGTAGGAACATACGACACACAGTTGGTGGAGCATTTCTTCCAGTCTT 313
Query 653 TGGTGAATACTTCTGGTATGACTCTTCACATCCGACAGCTTGCTGGTAAAAACTCGCATC 712
|||||||||||||||||||||| ||||||| |||||||||||| ||||||||||| ||||
Sbjct 314 TGGTGAATACTTCTGGTATGACACTTCACACCCGACAGCTTGCCGGTAAAAACTCTCATC 373
Query 713 ACATAATAGAAGCGACCTTTAAGGCCTTTGCAAGAGCTCTCCGACAAGCAACAGAGTCTG 772
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 374 ACATAATAGAAGCGACCTTTAAGGCCTTTGCAAGGGCTCTCCGACAAGCAACAGAGTCTG 433
Query 773 ATCCACGCCGCGGTGGGACAATACCA 798
||||||| |||||||| |||||||||
Sbjct 434 ATCCACGTCGCGGTGGAACAATACCA 459
> Ahg891062 jgi|Araly1|891062|Al_scaffold_0007_3048
Length=471
Score = 649 bits (351), Expect = 0.0
Identities = 415/446 (93%), Gaps = 4/446 (1%)
Strand=Plus/Plus
Query 355 CAACTTGCTTCACATGGCTTGTTCGATGTACACGTAAGAGCTACTGGTGATAC-TCACAT 413
||||||||||||||||| |||||| ||||||| |||||||||||||||| | ||||||
Sbjct 1 CAACTTGCTTCACATGGATTGTTCCATGTACATGTAAGAGCTACTGGTG-GCCTTCACAT 59
Query 414 TGATGATCATCATACTAATGAAGATGTTGCTCTTGCCATTGGAACTGCTTTGTTAAAGGC 473
|||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||
Sbjct 60 TGATGATCATCATACTAATGAAGATGTTGCTCTTGCTATTGGTACAGCTTTGTTAAAGGC 119
Query 474 ACTTGGGGAACGGAAAGGGATTAATCGTTTTGGCGATTTTACAGCTCCTCTTGATGAAGC 533
|||||| || |||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 120 ACTTGGTGAGCGGAAAGGGATTAACCGTTTTGGCAATTTTACAGCTCCTCTTGATGAAGC 179
Query 534 ACTCATACATGTTTCCCTGGATCTATCTGGTAGACCATATCTTGGATACAA-CTTAGAGA 592
|||||||| ||| |||||| ||||||||||||||||||||||||| ||||| ||||||||
Sbjct 180 ACTCATACGTGTGTCCCTG-ATCTATCTGGTAGACCATATCTTGGCTACAAACTTAGAGA 238
Query 593 TTCCAACGCAGAGAGTAGGAACATACGACACTCAGTTGGTGGAACACTTCTTCCAGTCAT 652
||||||| ||||||||||||||||||||||| ||||||||||| || ||||||||||| |
Sbjct 239 TTCCAACCCAGAGAGTAGGAACATACGACACACAGTTGGTGGAGCATTTCTTCCAGTCTT 298
Query 653 TGGTGAATACTTCTGGTATGACTCTTCACATCCGACAGCTTGCTGGTAAAAACTCGCATC 712
|||||||||||||||||||||| ||||||| |||||||||||| ||||||||||| ||||
Sbjct 299 TGGTGAATACTTCTGGTATGACACTTCACACCCGACAGCTTGCCGGTAAAAACTCTCATC 358
Query 713 ACATAATAGAAGCGACCTTTAAGGCCTTTGCAAGAGCTCTCCGACAAGCAACAGAGTCTG 772
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 359 ACATAATAGAAGCGACCTTTAAGGCCTTTGCAAGGGCTCTCCGACAAGCAACAGAGTCTG 418
Query 773 ATCCACGCCGCGGTGGGACAATACCA 798
||||||| |||||||| |||||||||
Sbjct 419 ATCCACGTCGCGGTGGAACAATACCA 444
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47691769167
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5