BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14920.1
Length=3531
Score E
Sequences producing significant alignments: (Bits) Value
Ahg330015 jgi|Araly1|330015|fgenesh1_pm.C_scaffold_7002242 1295 0.0
Ahg891063 jgi|Araly1|891063|Al_scaffold_0007_3049 407 3e-112
Ahg896218 jgi|Araly1|896218|Al_scaffold_0005_184 353 4e-96
> Ahg330015 jgi|Araly1|330015|fgenesh1_pm.C_scaffold_7002242
Length=3027
Score = 1295 bits (701), Expect = 0.0
Identities = 797/844 (94%), Gaps = 3/844 (0%)
Strand=Plus/Plus
Query 638 AGAAGAAGTACAAGCGTGACATGAATTTTGATGAACCAATCAGGGTGCAGGGGAAAAATG 697
||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 554 AGAGGAAGTACAAGCGTGAAATGAATTTTGATGAACCAATTAGGGTGCAGGGGAAAAATG 613
Query 698 GTGTCCTCAAGGTGATGGTGAACAAGCAGAATAAGATAGGAGGGTTACTGCAAAATGCGA 757
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 614 GTGTCCTCAAGGTGATGGTGAACAAGCAGAATAAGGTAGGAGGGTTACTGCAAAATGCGA 673
Query 758 AAGCTGAACAAACTCAATGTGGCTCAACGATTCAAGAGACTGGTAAAATACGTGTTGCTA 817
||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 674 AAGCTGAACAATCTCAATATGGCTCAAAGATTCAAGAGACTGGTAAAATACGTGTTGCTA 733
Query 818 TCCAGTTGCCAAACACTTTAAAAACTGAAAAGTTGCCGAAACTGCCTCCCCCAGCCAGAA 877
|||||| ||||| |||||||||||||||||||||||||||||||| |||||| | |||||
Sbjct 734 TCCAGTCGCCAACCACTTTAAAAACTGAAAAGTTGCCGAAACTGCTTCCCCCGGTCAGAA 793
Query 878 TACAGTCAAATGGGCTAAAACTGCCCATGTCCTTAACCATGAAGAGTAAGGGACAGAACC 937
||||||| |||||| ||||| |||| ||||||||| |||||||||||||||||||| |||
Sbjct 794 TACAGTCGAATGGGTTAAAAATGCCTATGTCCTTACCCATGAAGAGTAAGGGACAGGACC 853
Query 938 AAGATTCTGAAGATAGTGATAGCTCGGGCCGGCTGCAGAAAAGAATAATACAACCTCATA 997
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 854 AAGATTCTGAAGATAGTGATAGCTCGGGGCGGCTGCAGAAGAGAATAATACAACCTCATA 913
Query 998 AGCCCTCTCAGATGTCAAGCACTGGAGGAGAAAAGACATTACCTGAAGCGTCAATGCCTT 1057
|||||||||| ||||||||||||||||||||||| || |||||||||| |||||||||||
Sbjct 914 AGCCCTCTCATATGTCAAGCACTGGAGGAGAAAATACTTTACCTGAAGTGTCAATGCCTT 973
Query 1058 CCAAAATTAGAGATGGAAAGATTAGGCGTGGTTCAGGCACAGAAAAACAAAGATTACGTG 1117
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 974 CAAAAATCAGAGATGGAAAGATTAGGCGTGGTTCAGGCACAGAAAAACAAAGATTACGTG 1033
Query 1118 AGCGAATTAGGGAAATGTTACTGGAAGCAGGGTGGACGATTGACTACAGACCTAGGAGGA 1177
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 1034 AGCGAATCAGGGAAATGTTACTGGAAGCAGGGTGGACGATTGACTATAGACCTAGGAAGA 1093
Query 1178 ATAGAGACTACCTAGATGCAGTTTATATAAGTCCCAGGGGAACAGCGTATTGGTCTATTA 1237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1094 ATAGAGACTACCTAGATGCAGTTTATATAAGTCCCAGGGGAACAGCGTATTGGTCTATTA 1153
Query 1238 TCAAGGCTTATGAAGCACTTCTGAAGCAGTTAAATAGTGGGGAAAAAGTTGCCAAGCCTT 1297
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1154 TAAAGGCTTATGAAGCACTTCTGAAGCAGTTAAATAGTGGGGAAAAAG---CCAAGCCTT 1210
Query 1298 GTGACGATAGTTCCACATTTTCTCTGATATCAGATGAGATACTCAGTCAGTTAACAAGGA 1357
|||| ||||||||||||||| | ||||| || ||||||||||||||||||||||||||||
Sbjct 1211 GTGAAGATAGTTCCACATTTACGCTGATCTCCGATGAGATACTCAGTCAGTTAACAAGGA 1270
Query 1358 AAACCAAAAGTAAGATTGAAAAAGATATGAAAAGGGAGCTACACTCTGCCAGTGATAGTG 1417
|||||||||| ||||||||||||||||||||||| ||| ||| |||||||||||||| |
Sbjct 1271 AAACCAAAAGAAAGATTGAAAAAGATATGAAAAGTGAGGAACAATCTGCCAGTGATAGCG 1330
Query 1418 ATGGAAAAGCGACTTTTGCAAGGAATTTCCTAGCTATTAAAAATGAAGTAGGAAACGATG 1477
||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 1331 TTGGAAAAGCGACTTTTGCAAGAAATTTCTTAGCTATTAAAAATGAAGTAGGAAACGATG 1390
Query 1478 ACAG 1481
||||
Sbjct 1391 ACAG 1394
Score = 1018 bits (551), Expect = 0.0
Identities = 595/616 (97%), Gaps = 4/616 (1%)
Strand=Plus/Plus
Query 1532 ACAGCAGAGATAGTTCACA-GGGTACAACTTCAAAAAGTGAAAGCCCTTTGCATCACCAA 1590
||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||
Sbjct 1391 ACAGCAGAGATAGTTCA-AGGGGTACAACTTCAAAAAGTGCAAGCCCTTTGCATCACCAA 1449
Query 1591 ACTGAAAAGTCAACTGGTTCCTCCTCTCACCGTGTGGATGGAGGGAAAAGTAGCAAACAT 1650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1450 ACTGAAAAGTCAACTGGTTCCTCCTCTCACCGTGTGGATGGAGGGAAAAGTAGCAAACAT 1509
Query 1651 GGTAGGAGTACACTGTTGGTGCGGCGTTCAGTCAGAGGAGATAATTCAGA-GAGTGATGG 1709
||||||||||| |||| ||| |||||| |||||||||||||||||||||| || ||||||
Sbjct 1510 GGTAGGAGTACGCTGTCGGTACGGCGTCCAGTCAGAGGAGATAATTCAGAGGA-TGATGG 1568
Query 1710 TTTTGTACCCTCATCTGAAAAACGGACGGTACTGGCATGGCTGATTGATAGTGGAACCTT 1769
|||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 1569 TTTTGTTCCCTCATCTGAAAAACAGACGATACTGGCATGGCTGATTGATAGTGGAACCTT 1628
Query 1770 ACAGTTGAGTGAAAAGGTAATGTACATGAACCAACGCCGGACACGCGCCATGCTTGAGGG 1829
| |||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1629 AAAGTTGAGTGAAAAGGTGATGTACATGAACCAACGACGGACACGCGCAATGCTTGAGGG 1688
Query 1830 TTGGATAACAAGAGACGGGATTCACTGTGGTTGCTGTAGTAAAATTCTTGCGGTTTCGAA 1889
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||
Sbjct 1689 TTGGATAACAAGAGACGGGATTCACTGTGGTTGCTGTAGTAAAATTCTTTCAGTTTCAAA 1748
Query 1890 GTTTGAGATACATGCTGGAAGCAAATTGCGGCAGCCATTTCAGAACATATTTTTGAATTC 1949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1749 GTTTGAGATACATGCTGGAAGCAAATTGCGGCAGCCATTTCAGAACATATTTTTGAATTC 1808
Query 1950 TGGGGTTTCTCTTCTTCAATGCCAAATAGATGCATGGGATAAGCAAAAGGGTGCTGGGAA 2009
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1809 TGGGGTTTCTCTTCTTCAATGCCAAATAGATGCATGGGATAAGCAAAAGGGTGCTGGGAA 1868
Query 2010 CATTGGTTTTTGTTCAGTAGATGTAATTGCTGATGATCCAAATGACGATGCTTGTGGTAT 2069
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1869 CATTGGTTTTTGTTCGGTAGATGTAATTGCTGATGATCCAAATGACGATGCTTGTGGCAT 1928
Query 2070 TTGTGGAGATGGAGGTGATTTAGTTTGCTGTGATGGTTGTCCCTCAACTTTCCACCAAAG 2129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1929 TTGTGGAGATGGAGGTGATTTAGTTTGCTGTGATGGTTGTCCCTCAACTTTCCACCAAAG 1988
Query 2130 ATGCCTAGACATACGG 2145
||||||||||||||||
Sbjct 1989 ATGCCTAGACATACGG 2004
Score = 678 bits (367), Expect = 0.0
Identities = 408/428 (95%), Gaps = 2/428 (0%)
Strand=Plus/Plus
Query 2353 CTCTCCGAAGGTGTCAAGAAGTATGTTGGTGTCAAACATGAGTTGGAAGCTGGATTTTCA 2412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2167 CTCTCCGAAGGTGTCAAGAAGTATGTTGGTGTCAAACATGAGTTGGAAGCTGGATTTTCA 2226
Query 2413 TGGTCTCTAGTTCATAGGGAATGCACAAATTCAGATTTATCCTTAAGTGGACACCCTCAT 2472
||||||||||||||||||||||| || |||||||||||| |||| ||| ||||||||||
Sbjct 2227 TGGTCTCTAGTTCATAGGGAATGTGCAGATTCAGATTTATTCTTAGGTGAACACCCTCAT 2286
Query 2473 ATTGTGGAAAACAATTCCAAGCTTGCATTAGCTTTGACAGTCATGGATGAATGCTTTCTG 2532
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2287 ATTGTGGAAAACAATTCCAAGCTTGCATTAGCTCTGACAGTCATGGATGAATGCTTTCTG 2346
Query 2533 CCCATTATTGACAGGAGGAGTGGGGTGAATATAGTACAAAATGTCCTTTACAATTGTGGG 2592
|||||| ||||||| || ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2347 CCCATTGTTGACAGAAGAAGTGGGGTGAATATAGTACGAAATGTCCTTTACAATTGTGGG 2406
Query 2593 TCCAACTTCAATCGGCTGAACTTTGGTGGATTCTATACTGCTCTTCTTGAAAGAGGCGAC 2652
|| ||||| || ||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 2407 TCGAACTTTAACCGGCTGAACTTCGGTGGATTCTATACTGCTCTTCTTGAGAGAGGCGAC 2466
Query 2653 GAAATAGTTGCTTCAGCATCTATTAGATTTCATGGTAACCGTCTAGCTGAGATGCCGTTC 2712
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2467 GAAATAGTTGCTTCTGCATCTATTAGATTTCATGGTAACCATCTAGCTGAGATGCCGTTC 2526
Query 2713 ATTGGAACTCGGCATGTCTACAGACACCAAGGGATGTGCCGGCGGCTTTTCAGCGT-AGT 2771
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 2527 ATTGGAACTCGGCATGTCTACAGACACCAAGGGATGTGCCGGCGGCTTTTCAGCGTCA-T 2585
Query 2772 TGAATCAG 2779
||||||||
Sbjct 2586 TGAATCAG 2593
Score = 555 bits (300), Expect = 1e-156
Identities = 387/430 (90%), Gaps = 2/430 (0%)
Strand=Plus/Plus
Query 2989 TGTGACCCATGCAATGAAGGCACTAATTCAGCGATCAAGACTAATGAAGTTTCCGTCTTG 3048
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 2599 TGTGACCCATGCAATGAAGGCACCAATTCTGCGATCAAGACTAATGAAGTTTCCGTCTTG 2658
Query 3049 GAGACCACATCACCGTCAAGAGATAAACCGGTATCAGATTATTTGGTCGAACACCAACCA 3108
|||||| |||| || ||| |||||||||| || |||||||| |||||||||||||||
Sbjct 2659 GAGACCGCATCTCCTTCAGGAGATAAACCAATACCAGATTATGTGGTCGAACACCAACTG 2718
Query 3109 TATGA-GGATGTAAGTTCTGCTTCCCGGGATAGTCTAGTCCACGATGGTTACCCCAAAAT 3167
| | | |||||||| ||| |||||||| ||||||| ||||||| |||| |||||||||||
Sbjct 2719 TTT-ACGGATGTAAATTCCGCTTCCCGAGATAGTCCAGTCCACAATGGATACCCCAAAAT 2777
Query 3168 GCTAGAGACTGCGTTCAAAACTTCAACCATGGCGAGATCATCAGATATGGAGAAGCACAT 3227
|| |||||| | || ||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 2778 GCAAGAGACCGAGTGCAAAATTTCAACCATGGCGAGATCATCAGATATGGAGGAGCACAT 2837
Query 3228 GGACTGCAAAACTTCCTATAGTCGATTTGATGGAGAAGATGAGGAAGATAGTTTAATTGA 3287
|||||||||| |||||| ||||| |||| |||||||||||| |||||||||||||||||
Sbjct 2838 GGACTGCAAATCTTCCTTTAGTCCTTTTGTTGGAGAAGATGAAGAAGATAGTTTAATTGA 2897
Query 3288 GTCTCCTCCTCAACGAAACAGCGACATGGCTTTCTTAGATCACATCATCCGCTCTCCGGT 3347
||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 2898 GTCTCCTCCTCAACGGAACAGCGACATGGCTTTCTTAGATCACATTATCCGTTCTCCGGT 2957
Query 3348 AGACACTGGTGCAACGGAAAACAGAGATGTCTATGGTTCAGGGGATGACGATTCTCCGGA 3407
|||||||||| || || |||| ||||||| ||||||||||||||||| |||||||||||
Sbjct 2958 AGACACTGGTAAAATGGCAAACGGAGATGTGTATGGTTCAGGGGATGATGATTCTCCGGA 3017
Query 3408 AACGCAATGA 3417
||||||||||
Sbjct 3018 AACGCAATGA 3027
Score = 481 bits (260), Expect = 2e-134
Identities = 298/315 (95%), Gaps = 8/315 (3%)
Strand=Plus/Plus
Query 287 GTTTTGTGGGGAATAGTAGAGAGTGGAAGGAGAGTAAGAGACATAGATTAgatgatgat- 345
||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 242 GTTTTGTGGGGAAGAGTAGAGAGTGGAAGGAGAGTAAGAGGCATAGATTAGATGATGATG 301
Query 346 --gatga-ca--atgatgatgatgaggagagtgaagatgaattgatggcaatgaggatga 400
||||| | |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 302 ACGATGATGATGATGATGATGATGAGGAGAGTGAAGATGAATTGTTGGCAATGAGGATGA 361
Query 401 ggaggtcgtttgatgGAAGTGGTGTTGATATTGGTAAGAAAGCTTATTTGGGGTCTGCTC 460
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 GGAGGTCGTTTGATGGCAGTGGTGTTGATATTGGTAAGAAAGCTTATTTGGGGTCTGCTC 421
Query 461 -ACTTTGCTAATGATAGGGAATATGGAACTGGTTCTAGTCGTAAAGGTTTAGATATTGAG 519
| |||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 422 GA-TTTGGTAATGGTAGGGAATATGGAACTGGTTCTAGTCGTAAAGATTTAGATATTGAG 480
Query 520 AAGAGAAGAAAACCGTATTTAGATGGATCAGGGAACATAGGTTTTGGTAATCAAGGTTAT 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AAGAGAAGAAAACCGTATTTAGATGGATCAGGGAACATAGGTTTTGGTAATCAAGGTTAT 540
Query 580 AGAAACAGGTGTAAG 594
||||||| |||||||
Sbjct 541 AGAAACATGTGTAAG 555
Score = 368 bits (199), Expect = 1e-100
Identities = 231/247 (94%), Gaps = 0/247 (0%)
Strand=Plus/Plus
Query 1 ATGGATAGAGGTGGGAGGAGATCTGGTGAATCTCCAGGGGTATTGATTAAGAAGAGAAGT 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGGATAGAGGTGGGAGGAGATCTGGTGAATCTCCAGGGGTATTGATAAAGAAGAGAAGT 60
Query 61 TCTTCTGGTTGCTTAATTGTGAAGAAGAACGATGGTGTTGGTAGGATTTGTTCGTTTTCA 120
|| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 61 TCCTCTGGTTGCTTGATTGTGAAGAAGAACGATGGTGTTGGTAGAATTTGTTCGTTTTCT 120
Query 121 GAGAGTCGTCCGAATTGGGAGTCCAATAAGAGGTCTAGGATGATTACGAGTGACTCTGAG 180
|||| |||||||||||||||||||||||||||||||| ||||||| |||||| ||||||
Sbjct 121 GAGAATCGTCCGAATTGGGAGTCCAATAAGAGGTCTACGATGATTTTGAGTGATTCTGAG 180
Query 181 TCTAGCGATAGATTTACCATCCCTCGAAATATGCGCCAGTATCGTAATGTAGAAGAGAGT 240
|||||||||| |||| | ||||||| ||||||||| || |||||||||||||||||||||
Sbjct 181 TCTAGCGATAAATTTGCAATCCCTCAAAATATGCGACACTATCGTAATGTAGAAGAGAGT 240
Query 241 CGTTTTG 247
|||||||
Sbjct 241 CGTTTTG 247
Score = 206 bits (111), Expect = 1e-51
Identities = 119/123 (97%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 2141 TACGGATGTTTCCTCTTGGTGATTGGCATTGCCCCAATTGTACATGCAAATTCTGTAAGG 2200
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2044 TACAGATGTTTCCTCTTGGTGATTGGCATTGCCCCAATTGTACATGCAAATTCTGTAGGG 2103
Query 2201 CAGTTATTGAAGATGTTACTCAGACTGTGGGTGCAAATACCTGCAAAATGTGTGAGAAAA 2260
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 2104 CAGTTATTGAAGATGTTACTCAGACCGTGGATGCAAATACCTGCAAAATGTGTGAGAAAA 2163
Query 2261 AAT 2263
|||
Sbjct 2164 AAT 2166
> Ahg891063 jgi|Araly1|891063|Al_scaffold_0007_3049
Length=1053
Score = 407 bits (220), Expect = 3e-112
Identities = 280/309 (91%), Gaps = 4/309 (1%)
Strand=Plus/Plus
Query 2679 ATTTCATGGTAACCGTC-TAGCTGAGATGCCGTTCATTGGAACTCGGCATGTCTACAGAC 2737
||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||
Sbjct 747 ATTTCATGGTAACCG-CTTAGCTGAGATGCAGTTCATTGGAACTCGGCATGTCTACAGAC 805
Query 2738 ACCAAGGGATGTGCCGGCGGCTTTTCAGCGTAGTTGAATCAGCTCTTCAACATCTCAAAG 2797
|||||||||||||||| |||||||||||||| ||||||||| |||||||| |||||||||
Sbjct 806 ACCAAGGGATGTGCCGCCGGCTTTTCAGCGTTGTTGAATCAACTCTTCAAAATCTCAAAG 865
Query 2798 TCAAATTACTAATTATCCCTGCAACTGCCGACTTTAGCCATGTTTGGATATCCAAATTCG 2857
| ||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 866 TTGAATTACTTGTTATCCCTGCAACTGCTGACTTAAGCCATGTTTGGATATCCAAATTCG 925
Query 2858 GGTTTCGACAAGTCGAGGATTCTCTGAAGAAAGAAATGCGGTCCATGAATCTGCTAACCT 2917
||||| | | |||||||||||||||||||||||| |||||||||||||||| ||| |||
Sbjct 926 GGTTTAAATATGTCGAGGATTCTCTGAAGAAAGAATTGCGGTCCATGAATCTACTAGCCT 985
Query 2918 TCCCTGGCATTGATGTGTTACAGAAAGAGCTGTTAGCACCACGACATACCGAGTCTGCTG 2977
| ||||| |||||||||||||||||||| ||| |||||||| ||||| || |||||||||
Sbjct 986 TTCCTGGTATTGATGTGTTACAGAAAGAACTGCTAGCACCAAGACATGCCAAGTCTGCTG 1045
Query 2978 -TCGACACA 2985
| ||||||
Sbjct 1046 CT-GACACA 1053
Score = 106 bits (57), Expect = 1e-21
Identities = 74/82 (90%), Gaps = 2/82 (2%)
Strand=Plus/Plus
Query 2146 ATGTTTCCTCTTGGTGATTGGCATTGCCCCAATTGTACATGCAAATTCTGTAAGGCAGTT 2205
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 430 ATGTTTCCTCATGGTGATTGGCATTGCCCCAATTGTACATGCAAATTCTGTAGGGCAGTT 489
Query 2206 ATTGAAGA-TGTTACTCAGACT 2226
| ||||| ||| | ||| |||
Sbjct 490 GTCGAAGAATGT-AGTCAAACT 510
> Ahg896218 jgi|Araly1|896218|Al_scaffold_0005_184
Length=1158
Score = 353 bits (191), Expect = 4e-96
Identities = 286/328 (87%), Gaps = 22/328 (7%)
Strand=Plus/Plus
Query 2679 ATTTCATGGTAACCGTC-TAGCTGAGATGCCGTTCATTGGAACTCGGCATGTCTACAGAC 2737
||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||
Sbjct 747 ATTTCATGGTAACCG-CTTAGCTGAGATGCAGTTCATTGGAACTCGGCATGTCTACAGAC 805
Query 2738 ACCAAGGGATGTGCCGGCGGCTTTTCAGCGTAGTTG----AA--TC-----A---G---- 2779
|||||||||||||||| |||||||||||||| |||| || || | |
Sbjct 806 ACCAAGGGATGTGCCGCCGGCTTTTCAGCGTTGTTGAATCAATGTCTTTTGATGTGAAAA 865
Query 2780 CTCTTCAACATCTCAAAGTCAAATTACTAATTATCCCTGCAACTGCCGACTTTAGCCATG 2839
|||||||| |||||||||| ||||||| |||||||||||||||| ||||| |||||||
Sbjct 866 CTCTTCAAAATCTCAAAGTTGAATTACTTGTTATCCCTGCAACTGCTGACTTAAGCCATG 925
Query 2840 TTTGGATATCCAAATTCGGGTTTCGACAAGTCGAGGATTCTCTGAAGAAAGAAATGCGGT 2899
||||||||||||||||||||||| | | |||||||||||||||||||||||| ||||||
Sbjct 926 TTTGGATATCCAAATTCGGGTTTAAATATGTCGAGGATTCTCTGAAGAAAGAATTGCGGT 985
Query 2900 CCATGAATCTGCTAACCTTCCCTGGCATTGATGTGTTACAGAAAGAGCTGTTAGCACCAC 2959
|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 986 CCATGAATCTACTAGCCTTCCCTGGCATTGATGTGTTACAGAAAGAGCTGTTAGCACCAA 1045
Query 2960 GACATACCGAGTCTGCTG-TCGACACAG 2986
||||| || ||||||||| | |||||||
Sbjct 1046 GACATGCCAAGTCTGCTGCT-GACACAG 1072
Score = 139 bits (75), Expect = 1e-31
Identities = 87/93 (94%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 2145 GATGTTTCCTCTTGGTGATTGGCATTGCCCCAATTGTACATGCAAATTCTGTAAGGCAGT 2204
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 411 GATGTTTCCTCATGGTGATTGGCATTGCCCCAATTGTACATGCAAATTCTGTAGGGCAGT 470
Query 2205 TATTGAAGATGTTACTCAGACTGTGGGTGCAAA 2237
| | |||||||||| ||| ||||||||||||||
Sbjct 471 TGTCGAAGATGTTAGTCAAACTGTGGGTGCAAA 503
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 133353735792
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5