BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14930.1
Length=1887
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493398 jgi|Araly1|493398|fgenesh2_kg.7__2831__AT4G14930.1 1664 0.0
> Ahg493398 jgi|Araly1|493398|fgenesh2_kg.7__2831__AT4G14930.1
Length=1685
Score = 1664 bits (901), Expect = 0.0
Identities = 1057/1131 (93%), Gaps = 16/1131 (1%)
Strand=Plus/Plus
Query 218 TTTCGTACGGATTTCTCTAACCGGAGCGATGGAGATTGACGGT---GGAGATCGTATTTC 274
|||| ||||||||||||| || ||||||||||| ||||||||| ||||||||||| ||
Sbjct 102 TTTCTTACGGATTTCTCTGACTGGAGCGATGGAAATTGACGGTGGAGGAGATCGTATCTC 161
Query 275 CGGTGAACGACCGATCATTATGGTCACCAACGACGACGGAATAGACGCGCCTGGCCTT-C 333
||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
Sbjct 162 CGGTGAACGACCGATCATTATGGTCACCAACGACGACGGCATAGACGCGCCTGG-CTTGC 220
Query 334 GTTCTCTTGTTCGTGTCCTCGTCTCCACTAACCTCTACGATGTTCGCGTTTGCGCTCCTG 393
||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 221 GTTCTCTGGTTCGCGTCCTCGTCTCCACTAACCTCTACGATGTTCGCGTCTGCGCTCCTA 280
Query 394 ATTCGGAGAAATCTGCTGTTAGTCACAGTATAATATGGAGTAGACCACTCACTGCAAAAC 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 281 ATTCGGAGAAATCTGCTGTTAGTCACAGTATAATATGGAGTAGACCACTCACTGCAAAAC 340
Query 454 GAGTAGAGATCGATGGAGCTACTGCTTATTCTGTTGATGGAACTCCTGCGGATTGCACTG 513
|||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 341 GAGTAGAGATTGATGGAGCTACTGCTTATGCTGTTGATGGAACACCTGCGGATTGCACTG 400
Query 514 GTTTGGGCTTATCGGAAGCACTCTTTCCTTCTCGTCCTGACCTGGTTCTGAGTGGTATAA 573
|||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||
Sbjct 401 GTTTGGGCTTATCGGAAGAACTTTTTCCTTCTCGTCCTGACCTGGTTCTTAGTGGTATAA 460
Query 574 ACGTGGGTAGCAACTGCGGTTATAACATCGTCTATTCTGGAACTGTTGCTGGCGCTCGTG 633
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 461 ACGTGGGTAGCAACTGCGGATATCACATCGTCTATTCTGGAACTGTTGCTGGCGCTCGTG 520
Query 634 AAGCCTTCCTTTATGATGTGCCTTCTGCCTCCATATCATATGATTTTGATTGGAAACGTG 693
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 521 AAGCCTTCCTTTATGATGTGCCTTCTGCTTCCATATCATATGATTTTGATTGGAAACGTG 580
Query 694 GAGAGATGAATGCTAATGATTTTGCCCTTTCTGCCCAAGCCTGCTTGCCCATTATCAACG 753
|||||||||||||||||||||||| ||||||||||||||| |||||||| ||||| ||||
Sbjct 581 GAGAGATGAATGCTAATGATTTTGTCCTTTCTGCCCAAGCTTGCTTGCCTATTATAAACG 640
Query 754 GCATACTCGGTGCAATCAAGAACAAAACTCACCCTATGCAATGCTTTCTGAATATCGATT 813
|||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 641 GCATACTCAGTGCGATCAAGAACAAAACTCATCCTATGCAATGCTTTCTGAATATCGATT 700
Query 814 TGCCGACTGATATTGCTAACCACAAGGGATACAAACTAACTAGACAAGGTAAAAGCATGG 873
| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 701 TACCGACTGACATTGCTAACCATAAGGGATACAAACTAACTAGACAAGGTAAAAGCATGG 760
Query 874 GTAAAATGGGATGGAGACAAGTGGAAGAGGAAGCACAAGGGCCGAAGATGTTATCAACAA 933
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 761 GTAAAATGGGATGGAGACAAGTGGAAGAGAAAGCACAAGGGCCAAAGATGTTATCAACAA 820
Query 934 TGACAATGGATACAGAGTCAGGAGTAGTCTCATCAGAGAACGACACATCTGCTCATGCGG 993
||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||
Sbjct 821 TGACAATGGATACAGAGTCAGGAGTAGTCTCGTCAGACAACGACACATCTGCTCATTCGA 880
Query 994 GAAAAGATAGCCGTTTATTCAAAAGAGAGTTAAGGGCAAGCATCAGTGAAGAAGGGAGTG 1053
|||||||||||||||||||||||||||| |||||| |||| | | ||||||||||| ||
Sbjct 881 AAAAAGATAGCCGTTTATTCAAAAGAGAGGTAAGGGGAAGCTTTAATGAAGAAGGGACTG 940
Query 1054 ATTCTCATTACCTAAAAGAAGGATTTATTACGGTGACGCCGCTTGGAGCTCTATCTCAGA 1113
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 941 ATTCTCACTACCTAAAAGAAGGATTTATTACGGTGACGCCGCTTGGAGCTCTATCTCAGA 1000
Query 1114 CTGATGTGGATTGCCAAAACTACTACAAAGAATGGCTTCCCAAGATTACAAACCAGTCAT 1173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1001 CTGATGTGGATTGCCAAAACTACTACAAAGAATGGCTTCCCAAGATTACAAACCAGTCAT 1060
Query 1174 GCTCCTCCTCATCCCTTTGATGCTACAACATGAGAG-AAAATAAAAACTCTATTAGGA-- 1230
| ||||||||||||||||||| |||||||||||||| |||| ||||||||||||| ||
Sbjct 1061 GTTCCTCCTCATCCCTTTGATCCTACAACATGAGAGGAAAA-AAAAACTCTATTAAGATT 1119
Query 1231 -AA----TTACCCATTGTGGACCACAATTTGTGGTAGACCTATTATTATATCAGTACCAG 1285
|| ||||||||| | ||||||||||||||||||||||||||||||||||||| | |
Sbjct 1120 TAAGAACTTACCCATTTTAGACCACAATTTGTGGTAGACCTATTATTATATCAGTATCGG 1179
Query 1286 TTCTTTAGTTTTCT-TAAGTCTTGACTTACTATTGTTGTGAGCAGCAAAAT 1335
|| ||||||||| | || || ||||||| ||| ||| ||||||||| |||
Sbjct 1180 TTGTTTAGTTTTATATA-GTTTTGACTTGTTATGGTTATGAGCAGCAGAAT 1229
Score = 374 bits (202), Expect = 2e-102
Identities = 360/429 (84%), Gaps = 39/429 (9%)
Strand=Plus/Plus
Query 1365 TGAGCAGCAAAATAGATATCGAGTCCG-CGACATATGTTGAAATATCAAGG--A-TTCTT 1420
||||||||| ||| ||||||||| || ||||| |||||| |||||||||| | |||||
Sbjct 1217 TGAGCAGCAGAAT-GATATCGAG-ACGCCGACACATGTTGGAATATCAAGGAAACTTCTT 1274
Query 1421 AACAA-AAGCGATCAATCCATTTGAATATAATTTGTGCATTAGAGAATTGAGTTAACGTA 1479
|||| ||||||||| || ||||| |||||||||| || |||||| ||||| ||||
Sbjct 1275 GACAAGAAGCGATCAGTCAATTTG----TAATTTGTGCGTTTTAGAATTTAGTTACCGTA 1330
Query 1480 AACAAAGTTCAAGCGCTGGCGGCAGAACCTGAT---ATTGCAGTAACATCATCATGTGTG 1536
|||||||||| |||||||||||||| ||||||| |||||| |||||||||||||||||
Sbjct 1331 AACAAAGTTCGAGCGCTGGCGGCAGGACCTGATCAGATTGCAATAACATCATCATGTGTG 1390
Query 1537 CAAGTGGGGGATTAGTAATCTTCATCTTGC--ATAATCCTTGTTTTATACTTCAAGCTAT 1594
||||| || |||||||| || | ||||||| |||||||||||||||||||||||| |||
Sbjct 1391 CAAGTTGGAGATTAGTAGTCATGATCTTGCATATAATCCTTGTTTTATACTTCAAGTTAT 1450
Query 1595 GACCTATATATTTATTATTTATACATCCGATTCGAATATTAAGTTTGCTCCCGTGAATTA 1654
|||| ||||||||||||||||||||| | || | | | ||||||||||||||||
Sbjct 1451 GACCAATATATTTATTATTTATACAT-C----CG-A-A-T---TTTGCTCCCGTGAATTC 1499
Query 1655 GAAGGAAGAGTACAT--AATATGTCACGTGATAATTATTTTTCATCTTTACGTTTCTCAT 1712
|||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1500 GAAGGAAGAGTATATAAAATATGTCACGTGATAATTATTTTTCATCTTCACGTTTCTCAT 1559
Query 1713 ---ATGGT-TCTCATTCAACGACTTTCCAAGTCGGACTA-T-A-TATGTTTTTAATTATT 1765
|||| |||||||| |||||||||||| ||| |||| | | |||||| | |||||
Sbjct 1560 TTTATGGGGTCTCATTCGACGACTTTCCAACTCGAACTAATTAATATGTT---AGTTATT 1616
Query 1766 AATCATATA 1774
|||||||||
Sbjct 1617 AATCATATA 1625
Score = 108 bits (58), Expect = 2e-22
Identities = 67/71 (94%), Gaps = 1/71 (1%)
Strand=Plus/Plus
Query 1798 TAAACATATAGGTGCATGCATATAAATGTAAATGTATTGTTGTCGTCTACTTCAATAACA 1857
||| |||||||||||||||||||||||||||||| |||||||| |||||||| |||||||
Sbjct 1616 TAATCATATAGGTGCATGCATATAAATGTAAATGCATTGTTGTTGTCTACTT-AATAACA 1674
Query 1858 ACTCCATCAAT 1868
|||||||||||
Sbjct 1675 ACTCCATCAAT 1685
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70885945945
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5