BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G14940.1 Length=2215 Score E Sequences producing significant alignments: (Bits) Value Ahg493397 jgi|Araly1|493397|fgenesh2_kg.7__2830__AT4G14940.1 3053 0.0 > Ahg493397 jgi|Araly1|493397|fgenesh2_kg.7__2830__AT4G14940.1 Length=2087 Score = 3053 bits (1653), Expect = 0.0 Identities = 1899/2019 (94%), Gaps = 12/2019 (1%) Strand=Plus/Plus Query 1 ATGAACACATCA-ATACTTGCCATACTTTTTCTCATACAATGTGTTTTCACTCTTGGTCT 59 ||||||||| || ||||||||| || |||| ||| ||||||||| ||||||| ||||||| Sbjct 1 ATGAACACA-CACATACTTGCCCTAGTTTTCCTCCTACAATGTGCTTTCACTTTTGGTCT 59 Query 60 CCATTTCCACCCACTTGATCCCTTAACTCCCCAAGAAATCAAC-AAAACAAGCTTTATCG 118 ||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||| Sbjct 60 TCATTTCCACCCACTTGATCCCTTAACTCCCCAAGAAATC-ACTAAAACAAGCTTCATCG 118 Query 119 TCAAGAAATCTCATCTAGGCAACCTCAAAGATCTCACATTTCATTATCTCGACCTCGAAG 178 |||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||| Sbjct 119 TCAAGAAATCTCATCTAGGCAATCTCAAAGATCTCACATTTCACTACCTCGACCTCGAAG 178 Query 179 AACCAAACAAGAGCCACGTCCTCCAATGGCTATCACCAAATCCCTCCAAGAAACCACCAC 238 |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| Sbjct 179 AACCAAACAAGAGCCACGTCCTCCAATGGCTATCGCCAATTCCCTCCAAGAAACCACCAC 238 Query 239 CCCCACGTCGTCGCTCATTCGTCGTGGTTCGAGCCGGTGGTCAAACCTACGAGCTCATCA 298 | ||||||||||||||| |||| || ||||||||||||||||||||| ||||||| |||| Sbjct 239 CGCCACGTCGTCGCTCACTCGTGGTAGTTCGAGCCGGTGGTCAAACCCACGAGCTTATCA 298 Query 299 TCGACCTAACCACGAGCAAGATTGCATCCTCCCGCATCTACACAGGCCATGGTTTCCCCT 358 ||||||||||||| |||||||| | |||||||||||||||||| |||||||| ||||| | Sbjct 299 TCGACCTAACCACTAGCAAGATCGTATCCTCCCGCATCTACACCGGCCATGGATTCCCTT 358 Query 359 CATTCACATTCATAGAGCTTTTCAAAGCAAGCAAGCTTCCTCTAACTTACCCACCTTTCA 418 |||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| Sbjct 359 CATTAACATTCATAGAGCTTTTCAGAGCTAGCAAGCTTCCTCTAACTTACCCACCTTTCA 418 Query 419 AGAAATCGATTCTCGATCGATCCCTAAACATCTCCGAGGTTTCTTGCATCCCTTTCACCG 478 ||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||| Sbjct 419 AGAAATCGATTCTTGATCGAGCCCTCAACATCTCCGAGGTTTCTTGCATCCCTTTCACCG 478 Query 479 TTGGTTGGTACGGAGAAACCACCACGAGACGTGAACTCAAAGCCTCTTGCTTTTACAGAG 538 ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| Sbjct 479 TTGGTTGGTACGGAGAAACCACCACGAGACGTGAAGTCAAAGCTTCTTGCTTTTACAGAG 538 Query 539 ACGGATCAGTCAACGTCTTCACAAGACCCATCGAAGGAATCACCGTAACTATAGACGTCG 598 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 539 ACGGATCTGTCAACGTCTTCACAAGACCCATCGAAGGAATCACCGTAACTATAGACGTTG 598 Query 599 ACTCAATGCAAGTCATCAAGTACTCCGACAGATTCCGAAAGCCTATCCCTGATAAAGAAG 658 |||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||| Sbjct 599 ACTCAATGCAAGTCGTGAAGTACTCCGACAGATTCCGAAAGCCTCTCCCTGATAAAGAAG 658 Query 659 GTAACGACTTTAGGACTAAACACAGACCCTTCCCGTTCTTTTGCAACGTCTCCGACACAG 718 ||||||||||| | || ||||||| ||||||||| |||| |||||||||||||||||||| Sbjct 659 GTAACGACTTTCGAACCAAACACAAACCCTTCCCATTCTCTTGCAACGTCTCCGACACAG 718 Query 719 GCTTCAAGATACTCGGCAATAGAGTCAAGTGGGCTAACTGGAAATTCCACGTCGGATTTA 778 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 719 GCTTCAAGATACTCGGCAATAGAGTCAAGTGGGCTAACTGGAAATTCCACGTCGGATTTA 778 Query 779 CCGCAAGAGCGGGAGTAACTATATCGACGGCTTCGGTTCTTGACCCGAGAACCAAAAGGT 838 | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 779 CAGCAAGAGCGGGAGTAACCATATCGACGGCTTCGGTTCTTGACCCGAGAACCAAAAGGT 838 Query 839 TTCGACGAGTGATGTATAGAGGGCACGTGTCAGAGACTTTTGTTCCGTACATGGACCCAA 898 |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| Sbjct 839 TTCGACGAGTGATGTACAGAGGACACGTGTCAGAGACTTTTGTTCCGTACATGGACCCAA 898 Query 899 CCTACGAATGGTACTACCGTACGTTCATGGACATTGGAGAGTTTGGTTTCGGGAGATCCG 958 |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct 899 CCTACGAATGGTACTACCGTACGTTCATGGACATCGGAGAGTTCGGTTTCGGGAGATCCG 958 Query 959 CCGTGAATCTGCAGCCACTCATTGACTGCCCGCAAAACGCTGCGTTTTTAGATGGGCACG 1018 |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 959 CCGTGACTCTGCAGCCACTCATTGACTGCCCGCAAAACGCTGCGTTTTTAGATGGACACG 1018 Query 1019 TGGCCGGACCAGATGGGACAGCTCAGAAGATGACCAATGTGATGTGTGTATTCGAGAAAA 1078 ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| Sbjct 1019 TGGCCGGACCAGATGGGACAGCTCAGAGGATGACCAATGTGATGTGTGTCTTCGAGAAAA 1078 Query 1079 ACGGTTACGGTGCTTCTTTTAGACACACCGAGATTAATGTTCCAGGACAAGTGATAACAA 1138 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1079 ACGGTTACGGTGCTTCTTTTAGACACACCGAGATTAATGTTCCAGGACAAGTGATAACAA 1138 Query 1139 GTGGGGAAGCTGAAATAAGTTTAGTGGTTAGAATGGTGGCCACACTTGGAAACTATGATT 1198 ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1139 GTGGGGAAGCTGATATAAGTTTAGTGGTTAGAATGGTGGCCACGCTTGGAAACTATGATT 1198 Query 1199 ACATAGTGGATTGGGAATTTAAAAAGAATGGAGCCATCAGAGTTGGGGTGGATTTGACTG 1258 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1199 ACATTGTGGATTGGGAATTTAAAAAGAATGGAGCCATCAGAGTTGGGGTGGATTTGACTG 1258 Query 1259 GAGTTTTAGAAGTAAAAGCGACATCGTACACTTCAAACGATCAAATAACGGAGAACGTAT 1318 ||||||| ||||||||||| || |||||||| || ||||||||||||||||| ||||| | Sbjct 1259 GAGTTTTGGAAGTAAAAGCAACGTCGTACACGTCGAACGATCAAATAACGGATAACGTTT 1318 Query 1319 ACGGTACACTGGTGGCGAAGAACACTATCGCCGTTAACCACGACCATTACCTAACGTACT 1378 |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1319 ACGGGACACTGGTGGCGAAGAACACCATCGCCGTTAACCACGACCATTACCTAACGTACT 1378 Query 1379 ACTTGGACCTCGACGTTGACGGTAACGGCAATTCCTTGGTGAAAGCCAAACTCAAAACGG 1438 |||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||| Sbjct 1379 ACTTGGACCTCGACGTTGACGGTAACGGCAATTCTTTGGTGAAAGCGAAACTCAGAACGG 1438 Query 1439 TAAGAGTAACGGAAGTTAACAAAACGTCTTCTCGGAGGAAGAGTTACTGGACGGTCGTTA 1498 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1439 TAAGAGTAACGGACGTTAACAAAACGTCTTCTCGGAGGAAGAGTTACTGGACGGTCGTTA 1498 Query 1499 AAGAGACGGCGAAAACGGAAGCTGACGGTAGAGTTCGACTCGGCTCGGATCCGGTTGAGC 1558 |||||||||||||||| |||||||| |||||||||||||||||||| || |||||||||| Sbjct 1499 AAGAGACGGCGAAAACAGAAGCTGATGGTAGAGTTCGACTCGGCTCAGAGCCGGTTGAGC 1558 Query 1559 TGTTAATAGTAAACCCGAACAAGAAGACGAAA-ATAGGAAATACAGTTGGTTACCGGCTG 1617 | |||||||| ||||| || |||||||| ||| ||||||||||| ||||||||||||||| Sbjct 1559 TATTAATAGTTAACCCTAAAAAGAAGAC-AAAGATAGGAAATACGGTTGGTTACCGGCTG 1617 Query 1618 ATACCGGAACATTTACAAGCCACTTCGCTTTTAACCGATGATGATTACCCCGAGTTAAGA 1677 ||||| |||||||||| || |||||||||||||||||| ||||||||||| ||| ||||| Sbjct 1618 ATACCAGAACATTTACCAGTCACTTCGCTTTTAACCGACGATGATTACCCGGAGATAAGA 1677 Query 1678 GCCGGTTACACGAAATATCCGGTTTGGGTGACCGCCTATGACCGGTCCGAGAGATGGGCC 1737 ||||||||||||||||||||||||||| | || || ||| ||||||| || ||||||||| Sbjct 1678 GCCGGTTACACGAAATATCCGGTTTGGATTACTGCTTATAACCGGTCAGAAAGATGGGCC 1737 Query 1738 GGTGGGTTTTATAGTGATCGGAGCCGTGGCGATGACGGTTTAGCTGTATGGAGTAGTAGG 1797 ||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||| ||| Sbjct 1738 GGTGGTTTTTATAGCGATAGGAGCCGTGGCGATGACGGTTTAGCTGTATGGAGTAGCAGG 1797 Query 1798 AACAGAGAGATAGAGAACAAAGACATAGTGATGTGGTACAACGTTGGGTTTCATCACATT 1857 |||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 1798 AACACAGAGATAGAGAACAAAGACATAGTGATGTGGTACAATGTTGGATTTCATCACATT 1857 Query 1858 CCATACCAAGAGGATTTTCCGGTTATGCCAACTCTTCACGGTGGTTTTACTCTTCGGCCT 1917 ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||| Sbjct 1858 CCATACCAAGAGGATTTTCCGGTTATGCCCACTCTTCACGGTGGATTTACTCTTCGACCT 1917 Query 1918 TCAAATTTCTTCGATAACGATCCTTTGATTGGGTAAATACGGTCTT-AGACAAACAAACT 1976 || ||||| |||||||| |||||||||||||||||||||||| | | ||||||||||||| Sbjct 1918 TCCAATTTTTTCGATAATGATCCTTTGATTGGGTAAATACGG-CATCAGACAAACAAACT 1976 Query 1977 GATG---GCTTATGTATTGATTGACTTATGTTACGTCAA 2012 |||| || | |||| |||||||||||||||||||||| Sbjct 1977 GATGTTAGCCT-TGTAATGATTGACTTATGTTACGTCAA 2014 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 83379546305 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5