BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14950.1
Length=1930
Score E
Sequences producing significant alignments: (Bits) Value
Ahg890818 jgi|Araly1|890818|Al_scaffold_0007_2804 1986 0.0
> Ahg890818 jgi|Araly1|890818|Al_scaffold_0007_2804
Length=1254
Score = 1986 bits (1075), Expect = 0.0
Identities = 1199/1258 (95%), Gaps = 11/1258 (1%)
Strand=Plus/Plus
Query 347 ATGGGATCGGCTG-GTGTAGCGAGTTCTTCTTCTGATGTTGCGATCTCAGCTTTGCGTGA 405
||||||||||||| | || ||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 ATGGGATCGGCTGCG-GTTGCGAGTTCTTCTTCTGATGTTGCGATCTCAGCTCTGCGTGA 59
Query 406 GAAGCATGAGAAGGAAGTAGAGAATCTAACATTAACGACACAACCTTTGAATACATTGAA 465
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 60 GAAGCATGAGAAGGAAGTAGAGAATCTAACATTGACCACACAACCTTTGAATACATTGAA 119
Query 466 GTTGTTTGTTGAGGCTACTATTCAGTACATCAAGCGATCCATATCGTATCTAT-TGGCTC 524
||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||
Sbjct 120 GTTGTTTGTTGAGGCTACTATTCAGTACATCAAGCGATCGATATCGTATCT-TGTGGCTC 178
Query 525 ATGGAGGTTGGTTTATACTGATAACCACTTTGTTAGTGGTATCTGGTGGTTTGCTTGTTA 584
||||||| ||||||||||| ||||| ||||||||||||| |||||||||||||||| | |
Sbjct 179 ATGGAGGATGGTTTATACTTATAACAACTTTGTTAGTGGCATCTGGTGGTTTGCTTATCA 238
Query 585 CTGTTGATGGACCTCATGGCAAGCATGTTGAAGAAGTATTAGAGTATGTCCGATATGGCT 644
||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||
Sbjct 239 CTGTTGATGGACCTCATGGAAAGCATGTGGAAGAAGTATTAGAGTATGTCCGGTATGGCT 298
Query 645 TGTGGTGGATAGCACTTGGTGTTGCATCTTCTATTGGTCTTGGATCTGGTCTCCATACTT 704
| |||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 299 TATGGTGGATAGCACTCGGTGTCGCATCTTCTATTGGTCTTGGATCTGGTCTCCACACTT 358
Query 705 TCGTTCTCTATTTGGGTCCGCACATTGCTTTGTTCACTCTAAAAGCAACGCTATGTGGTC 764
|||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
Sbjct 359 TCGTGCTCTATTTGGGTCCACACATTGCTTTGTTCACTCTAAAAGCAACGCTGTGTGGCC 418
Query 765 GAGTTGATCTAAAATCTGCACCATATGATACAATACAGTTGAAAAGGGTTCCTTCATGGC 824
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 419 GGGTTGATCTAAAATCTGCACCATATGATACAATACAGTTGAAAAGGGTTCCCTCATGGC 478
Query 825 TTGATAAATCTTGTTCGGAATTCGGTCCTCCTTTAATGATATCAGCTGCTGGATCGCGTG 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TTGATAAATCTTGTTCGGAATTCGGTCCTCCTTTAATGATATCAGCTGCTGGATCGCGTG 538
Query 885 TGCCTCTTACCAGCATATTGCCACAAGTCCAGTTGGAGGCAATCTTATGGGGTATTGGGA 944
|||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 539 TGCCCCTTACCAGCATATTGCCACAAGTCCAACTGGAGGCGATCTTATGGGGTATTGGGA 598
Query 945 CGGCTCTTGGGGAGCTTCCTCCATATTTCATCTCAAGGGCAGCTAGTATATCTGGGAGCA 1004
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 599 CGGCTCTTGGGGAGCTTCCTCCATATTTCATCTCAAGAGCAGCTAGTATATCTGGGAGCA 658
Query 1005 CAGTGGATGGAATGGAAGAATTAGATGGTTCCTCCA-CTGAAGATAGCGGATTTATGGCA 1063
||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||
Sbjct 659 CAGTGGATGGAATGGAAGAATTAGATGGTTCCT-CATCTGAGGATAGCGGATTTATGGCA 717
Query 1064 ACTCACCTGAACCGTGTTAAGCGTTGGTTATTAACCCATTCACAGCACTTGAACTTCTTC 1123
||| |||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 718 ACTTACCTAAACCGAATTAAGCGTTGGTTATTAACCCATTCACAGCACTTGAATTTCTTC 777
Query 1124 ACTGTCTTGGTTCTTGCTTCGGTTCCAAATCCTTTGTTTGACCTCGCTGGAATAATGTGT 1183
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 778 ACTGTCTTGGTTCTTGCTTCGGTTCCAAATCCTTTGTTTGACCTTGCTGGAATAATGTGT 837
Query 1184 GGACAATTTGGCATTCCGTTTTGGGAATTCTTCCTGGCGACCTTAATCGGAAAGGCGATC 1243
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 838 GGACAATTTGGAATTCCGTTTTGGGAATTCTTCCTGGCGACTTTAATCGGAAAGGCAATC 897
Query 1244 ATCAAAACTCATATACAGACGATATTTATCATCTGCGTTTGTAATAACCAACTGCTTGAC 1303
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 898 ATCAAAACTCACATACAGACAATATTTATCATCTGCGTTTGTAATAACCAACTGCTCGAC 957
Query 1304 TGGATGGAGAACGAACTGATCTGGATACTTAGCCATGTCCCGGGATTGGCTTCTATGTTG 1363
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 958 TGGATGGAGAACGAGCTGATCTGGATACTTAGCCATGTCCCGGGTTTGGCTTCTATGTTG 1017
Query 1364 CCTGGACTCACAGCCAAACTCCACGCCATGAAAGAAAAGTATATTGATGCACCATCTCCT 1423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 CCTGGACTCACAGCCAAACTCCACGCCATGAAAGAAAAGTATATTGATGCACCATCTCCT 1077
Query 1424 GTTCCATCTCACATCAAGGT-G--AAAAAGTGGGATTTTTCGTTTGCATCGATCTGGAAC 1480
|||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||
Sbjct 1078 GTTCCATCTCACATCAAGGTAGTGAAAAAGTGGGATTTTTCATTTGCATCGATCTGGAAC 1137
Query 1481 GGGATAGTATGGCTCATGCTCCTCAACTT-TTTCGTGAAGATTGTGACAGCAACTGCACA 1539
|||||||| |||||||||||||||||||| ||| || |||||||||||||||||||||||
Sbjct 1138 GGGATAGTGTGGCTCATGCTCCTCAACTTCTTT-GTCAAGATTGTGACAGCAACTGCACA 1196
Query 1540 GAGACACTTGAAGAAGAAGCAAGAGAAAGAAATGGCTACTTTGACTCATTCAGATTGA 1597
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1197 GAGACACTTGAAGAAGAAGCAAGAGAAAGAAATGGCTGCTTTGACTCATTCAGATTGA 1254
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72523826480
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5