BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G14990.1
Length=3304
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946844 jgi|Araly1|946844|scaffold_703073.1 3522 0.0
Ahg479740 jgi|Araly1|479740|fgenesh2_kg.3__2441__AT3G22270.1 1735 0.0
> Ahg946844 jgi|Araly1|946844|scaffold_703073.1
Length=2412
Score = 3522 bits (1907), Expect = 0.0
Identities = 2255/2418 (93%), Gaps = 43/2418 (2%)
Strand=Plus/Plus
Query 292 TTGTGTTTGATCATGGAGAGATCTGATTCTAGAGATTTCTACAACTTCGCTAAGACTTCT 351
||||| ||||||||||||||||||||||||||||||||||| | ||| ||| |||||||
Sbjct 15 TTGTG-TTGATCATGGAGAGATCTGATTCTAGAGATTTCTATACCTTTGCTCGGACTTCT 73
Query 352 TCTGATAACAATAGTGCACTCTTTGACGCATCTCAATATGAGTTCTTTGGTCAAAGTCTT 411
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 74 TCAGATAAGAATAGTGCACTCTTTGACGCATCTCAATATGAGTTCTTTGGTCAAAGTCTT 133
Query 412 GAAGAAGTCGAATTGGGTGGTCTTGATGATGATGGTACTGTTCGTGGACATGTTGATGAT 471
|||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 134 GAAGAAGTGGAATTGGGTGGTCTTGATGATGATGTTACTGTTCGTGGACATGTCGATGAT 193
Query 472 GAAGAGTATCACTTGTTTGATAAAAGAGAGGGTGCTGGTTTAGGATCATTATCTGACATG 531
||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 194 GAAGAGTATCATTTGTTTGATAAAAGAGAGGGTGCTGGTTTAGGATCACTATCTGAGATG 253
Query 532 GATGATCTTGCCACAACTTTTGCAAAGCTGAACAGAAATGTTACCGGGCCCAAACACCTT 591
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 254 GATGATCTTGCCACAACTTTTGCAAAGCTGAACAGAAATGTTACTGGGCCCAAACACCTT 313
Query 592 GGAGTAATTGGTGACAGAGGATCAGGGTCCTTTTCAAGAGAAAGTTCTACTGCTACAGAT 651
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 314 GGAGTAATTGGTGACAGAGGATCAGGGTCCTTTTCAAGAGAAAGTTCTACTGCTACTGAT 373
Query 652 TGGACTCAGGATAATGAGTTCACAAGCTGGTTGGATCAGCACACAG-TTGAAGAACAAGT 710
||||| || |||||||||||||||||||||||||| |||||||| | |||||||||||||
Sbjct 374 TGGACACAAGATAATGAGTTCACAAGCTGGTTGGAACAGCACAC-GCTTGAAGAACAAGT 432
Query 711 TCAGGAAGCTAGTTGGTCTTCACAGCCACAATCATCTCCTAATTCAAATTCTCTGTATAG 770
|||||||||||||||||||||||||||||| || ||| ||||||| | ||| | || ||
Sbjct 433 TCAGGAAGCTAGTTGGTCTTCACAGCCACAGTCGTCTGCTAATTC--A-TCTTTATACAG 489
Query 771 GACATCCTCATATCCTCAGCAGCAAACACAGCTACAACATTACAGTAGCGAACCGATTAT 830
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 490 GACATCTTCATATCCTCAGCAGCAAACACAGCTACAACATTACAGTAGTGAACCGATTAT 549
Query 831 CGTACCAGAATCGACGTTTACATCTTTTCCTTCGCCTGGAAAAAGATCTCAACAGTCTTC 890
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 550 TGTACCAGAATCGACTTTTACGTCTTTTCCTTCGCCTGGAAAAAGATCTCAACAGTCTTC 609
Query 891 CCCGAGCCATATTCATCGTGCTCCTTCTCTTCCTGGTGGTAGTCAGTCGAACTTTTCAGC 950
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 610 ACCGAGCCATATTCATCGTGCTCCTTCTCTTCCTGGTGGTAGTCAGTCAAACTTTTCAGC 669
Query 951 TCCAAACGCCTCTCCGTTGTCGAATTCTACTTTCCATCTCTCGGGATTGTCACATGGACC 1010
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 670 ACCAAATGCCTCTCCGTTGTCGAATTCTACTTTCCATCTCTCAGGATTGTCACATGGACC 729
Query 1011 GTCGCATTATGGTAATAATTTGGCTAGATATGCCTCATGTGGTCCTACTCTTGGTAACAT 1070
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 730 ACCGCATTATGGTAATAATTTGGCTAGATATGCCTCATGTGGTCCTACTCTTGGTAACAT 789
Query 1071 GGTGCAACAACCTCCTCATTGGGTTACCGACCCCGGCCTTCTCCACGGTGATCATTCCGC 1130
|||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 790 GGTGCAGCAACCTCCTCATTGGGTTACCGACCCCGGTCTTCTGCACGGTGATCATTCCGG 849
Query 1131 GTTGTTACACAGTCTAATGCAACAGCAACATCTCCAACAACTGCCTCCTCGGAATGGTTT 1190
||||||||||||||||||||||||||| ||||| |||||| | |||||||||||||||||
Sbjct 850 GTTGTTACACAGTCTAATGCAACAGCAGCATCTGCAACAATTACCTCCTCGGAATGGTTT 909
Query 1191 TACTTCACAACAGTTGATATCTCTTCAGCAGAGACAATCTTTAGCTCATCTTGCTGCATT 1250
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 910 TACTTCACAACAGTTGATTTCCCTTCAGCAGAGACAATCTTTAGCTCATCTTGCTGCATT 969
Query 1251 ACAATCTCAGCTATATAGTTCTTATCCTTCTCCATCACATAAAGCT-CTTTTCGGGGTTG 1309
||| ||||||| |||||||||||||||||||||||||| |||| | ||||| |||| ||
Sbjct 970 GCAAACTCAGCTGTATAGTTCTTATCCTTCTCCATCACAAAAAGTTCCTTTT-GGGGCTG 1028
Query 1310 GTGAAGTAAGGGAACACAAACATAAGTCGTCTCATCGAAGTCGAAAGAACAGAGGTGGTA 1369
|||||||||| ||||||||||||||||| |||||| ||||||||||||||||| ||||
Sbjct 1029 GTGAAGTAAGAGAACACAAACATAAGTCATCTCATAGAAGTCGAAAGAACAGA---GGTA 1085
Query 1370 TCTCTCAACAGACATCAGATTTAGCTAGCCAGAAAAGCGAAAGCGGATTGCAGTTTAGAT 1429
||||||||||||| |||||||| |||||||||||||||||||||||| |||| |||| ||
Sbjct 1086 TCTCTCAACAGACCTCAGATTTGGCTAGCCAGAAAAGCGAAAGCGGACTGCAATTTAAAT 1145
Query 1430 CAAAGTACATGACTTCAGAAGAGATAGAGAGTATTCTCAAGATGCAGCATTCTAATTCAC 1489
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1146 CAAAGTACATGACTTCAGAAGAGATAGAGAGTATTCTCAAGATGCAGCATTCCAGTTCAC 1205
Query 1490 ACAGTAGTGACCCTTATGTCAATGATTATTACCACCAAGCTCGGCTTGCGAAAAAGTCAT 1549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1206 ACAGTAGTGACCCTTATGTCAATGATTATTACCACCAAGCTCGGCTTGCGAAAAAGTCAT 1265
Query 1550 CCGGATCAAGAACAAAGCCTCAGTTGTATCCTTCTCATTTGAAGGATCACCAATCTCGGT 1609
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1266 CCGGATCAAGAGTGAAGCCTCAGTTGTATCCTTCTCATTTGAAGGACCACCAATCTCGGT 1325
Query 1610 CGCGGAATAGTTCTGATCAGCAACCACAAGTTCATGTTGATGCTCTTGGAAAGATTACAC 1669
| || |||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
Sbjct 1326 CCCGTAATAGTTCTGATCAACAACCACAAGTTCATGTGGATGCTCTTGGAAAGATTACGC 1385
Query 1670 TTCCTTCTATTTGCAGACCACGAGCTCTACTCGAGGTTGACTCTCCTCCTAGCTCTGGT- 1728
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1386 TTCCTTCTATTTGCAGACCACGAGCGCTACTCGAGGTTGACTCTCCTCCTAGCTCTGGTG 1445
Query 1729 ---------C-----ATAAGCATCTTGAAGATGAGCCTCTTGTTGCAGCTAGAGTCACAA 1774
| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1446 ATGGAAGGTCTGGTCATAAGCATCTTGAAGATGAGCCTCTTGTCGCAGCTAGAGTCACAA 1505
Query 1775 TTGAAGATGCTTTCGGAGTTCTTATCGATATAGTTGACATTGATAGGACTCTTCAATTCA 1834
||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1506 TTGAAGATGCTTTTGGAGTTCTTATCGATATAGTTGACATTGACAGGACTCTCCAATTCA 1565
Query 1835 ACCGGCCACAAGACGGTGGTGCACAGCTCAGGAGAAAACGGCAGATCCTTCTTGAAGGAT 1894
|| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1566 ACAGGCCACAAGACGGTGGTGCACAGCTCAGGAGAAAACGGCAGATACTTCTAGAAGGAT 1625
Query 1895 TAGCAACTTCACTTCAACTTGTTGATCCTTTTAGCAAAACTGGTCAGAAAACCGGATTGA 1954
||||||| |||||||||||||||||||||||||||||||| || |||||||||| |||||
Sbjct 1626 TAGCAACATCACTTCAACTTGTTGATCCTTTTAGCAAAACCGGCCAGAAAACCGCATTGA 1685
Query 1955 CCACAAAGGATGATATCGTGTTTCTCCGCATAACGACTCTTCCTAAGGGTCGGAAATTGC 2014
|| | |||||||||||||||||||| |||||| | ||||||||||||||| | |||||||
Sbjct 1686 CCGCCAAGGATGATATCGTGTTTCTACGCATAGCTACTCTTCCTAAGGGTAGAAAATTGC 1745
Query 2015 TGACAAAGTATCTACAGCTTCTTGTTCCGGGTACTGAGATCGCGCGGGTTGTCTGTATGG 2074
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1746 TGACAAAGTATCTACAGCTTCTTGTTCCGGGTACTGAGATCGCTCGGGTTGTCTGTATGG 1805
Query 2075 CTGTATTCCGCCACCTGAGGTTTCTATTCGGTGGCCTACCGTCAGATAGCCTTGCAGCAG 2134
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1806 CTGTATTCCGCCACCTCAGGTTTCTATTCGGTGGCCTACCGTCAGATAGCATTGCAGCAG 1865
Query 2135 AGACGATAGCTAATCTTGCTAAAGCAGTTACGGTTTGTGTTCAAGCAATGGACCTCCGAG 2194
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1866 AGACAATAGCTAATCTTGCTAAAGCAGTTACGGTTTGTGTTCACGCAATGGACCTCCGAG 1925
Query 2195 CATTGAGTGCTTGTCTTGCAGCTGTTGTTTGCTCGTCAGAACAGCCACCTCTCCGTCCAA 2254
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1926 CATTGAGTGCTTGTCTTGCAGCTGTTGTTTGTTCTTCAGAACAGCCACCTCTCCGTCCAA 1985
Query 2255 TAGGAAGTTCTTCCGGGGACGGAGCATCGGTTGTCTTGGTATCTCTTCTTGAGAGAGCTG 2314
|||||||| |||||||||| ||||| || |||||||||||||||||||||||||||||||
Sbjct 1986 TAGGAAGTCCTTCCGGGGATGGAGCTTCAGTTGTCTTGGTATCTCTTCTTGAGAGAGCTG 2045
Query 2315 CTGAAGTA--A-TAGTGGCGGTGGTTCCACCGCGTGTCAGCAACCACGGGAATCCGAATG 2371
|||||||| | |||||| ||||||||||||||||||||||||| || |||||
Sbjct 2046 CTGAAGTAGTAGTAGTGGTGGTGGTTCCACCGCGTGTCAGCAAC--------TC-GAATG 2096
Query 2372 ATGGACTCTGGAGAGCCTCGTTTGATGAGTTCTTCTCTCTTCTTACTAAATATTGCAGGA 2431
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2097 ATGGACTCTGGAGAGCATCGTTTGATGAATTCTTCTCTCTTCTTACTAAATATTGCAGGA 2156
Query 2432 GCAAGTACGAGACAATCCATGGTCAGAACCACGACAATGCAGCTGATGTGTTGGAGTTAG 2491
||||||| ||||||||||||||||||||||| || ||||||||||||||||||||| |||
Sbjct 2157 GCAAGTATGAGACAATCCATGGTCAGAACCAGGATAATGCAGCTGATGTGTTGGAGCTAG 2216
Query 2492 CTATAAAGAGGGAAATGCCTGCCGAGCTTTTACGTGCGAGTCTTCGTCATACTAATGAAG 2551
|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2217 CTATAAAGAGAGAAATGCCTGCCGAGCTTTTACGTGCGAGTCTTCGTCATACCAATGAAA 2276
Query 2552 ACCAGCGGAACTTCTTACTTAACGTTGGTCGTAGTGCATCGCCAGTTAGCGAGTCGACAA 2611
|||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 2277 ACCAGCGGAATTTCTTACTTAACGTTGGTCGTAGTGCATCGCCAGTTAGCGAATCAACAA 2336
Query 2612 CAACC-CGT-GCAAGTGCAAGTGGTGGTCAGATTAACTCTGAATTTGTGAGGGGTTAA-G 2668
| || || || ||||||||||||||||| | || ||||||||||||||||||||| |
Sbjct 2337 CTACAACGACGC--GTGCAAGTGGTGGTCAGGTCAATTCTGAATTTGTGAGGGGTTAAAG 2394
Query 2669 TTTAACCATATAGGAAAC 2686
||||||||||||||||||
Sbjct 2395 TTTAACCATATAGGAAAC 2412
> Ahg479740 jgi|Araly1|479740|fgenesh2_kg.3__2441__AT3G22270.1
Length=3277
Score = 1735 bits (939), Expect = 0.0
Identities = 1962/2437 (81%), Gaps = 146/2437 (6%)
Strand=Plus/Plus
Query 297 TTT-GATCATGGAGAGATCTGATTCTAGAGATTTCTACAACTTCGCTAAG-ACTTCTT-C 353
||| ||||||||||||||||||||| || ||||| || ||||| | | | |||||| |
Sbjct 317 TTTCGATCATGGAGAGATCTGATTCAAGGGATTTGTATAACTTTG-TGCGTGCTTCTTCC 375
Query 354 -T-GATAACAATAGTGCACTCTTTGACGCATCTCAATATGAGTTCTTTGGTCA-AAGTCT 410
| ||||| || ||| ||||||| || ||||| ||||||||||| |||||||| || |||
Sbjct 376 TTAGATAAAAACAGTACACTCTTCGATGCATCACAATATGAGTTTTTTGGTCAGAA-TCT 434
Query 411 TGAAGA-AGTCG-AATTGGGTGGTCTT---GATGAT-GA-TG---G-TACTGTTCGTGGA 459
|| || | | | |||| || |||||| |||||| || || | | |||||| ||||
Sbjct 435 GGATGATA-TGGAAATT-GGAGGTCTTGACGATGATGGAGTGATCGCTCCTGTTCTTGGA 492
Query 460 CATGTTGATGATGAAGAGTATCACTTGTTTGATAAAAGAGAGGGTGCTGGTTTAGGATCA 519
|||| ||||||||| ||||||||||||||||||||| ||||||| || ||||||||||||
Sbjct 493 CATGCTGATGATGATGAGTATCACTTGTTTGATAAAGGAGAGGGAGCAGGTTTAGGATCA 552
Query 520 TTATCTGACATGGATGATCTTGCCACAACTTTTGCAAAGCTGAACAGAAATGTTACCGGG 579
|||||||||||||||||||||| |||||||| |||||| | |||||| |||||||||
Sbjct 553 CTATCTGACATGGATGATCTTGCGACAACTTTCGCAAAGTTAAACAGAGTTGTTACCGGA 612
Query 580 CCCAAACACCTTGGAGTAATTGGTGACAGAGGATCAGGGTCCTTTTCAAGAGAAAGTTCT 639
|||||||||| |||||| |||||||||||||||||||| |||||||||||||| ||||||
Sbjct 613 CCCAAACACCCTGGAGTTATTGGTGACAGAGGATCAGGATCCTTTTCAAGAGAGAGTTCT 672
Query 640 ACTGCTACAGATTGGACTCAGGAT-AATGAGTTCACAAGCTGGTTGGATCAGCACACAGT 698
||||||| |||||||| || ||| | ||| |||||||||||||||| | | ||| ||
Sbjct 673 TCTGCTACCGATTGGACACATGATGCA-GAGCTCACAAGCTGGTTGGA-C-GAACA-AGA 728
Query 699 TGAAGAACAAGTTCAGGAAGCTAGTTGGTCTTCACAGCCACAATCATCTCCTAATTCAAA 758
| ||| ||| | ||| || ||||| |||||||||||||||| | | |||||||
Sbjct 729 TCAAG---AAG--C--TAAG--AGGTGGTCCTCACAGCCACAATCATTTGTTCATTCAAA 779
Query 759 TTCTCTGTATAGGACATCCTCATATCCTCAGCAGCAAACACAGCTACAACATTACAGTAG 818
|| |||| ||||||||||| ||||||||||||||| | ||||| || || |||| |||
Sbjct 780 ACCTTTGTACAGGACATCCTCCTATCCTCAGCAGCAACCGCAGCTGCAGCACTACAATAG 839
Query 819 CGAACCGATTATCGTACCAGAATCGACGTTTACATCTTTTCCTTCGCCTGGAAAAAGATC 878
|||||||| || |||||||||| | ||||| || ||||| || |||| | |||||
Sbjct 840 TGAACCGATAATTTTACCAGAATCAAATTTTACCTCATTTCCCCCGTCTGGTAGCAGATC 899
Query 879 TCAACAGTCTTC-CCCGAGCCATATTCATCGTGCTCCTTCTCTTCCTGGTGGTAGTCAGT 937
|| |||| | || |||| | || | ||||||||||||||||||||||||||| |||||
Sbjct 900 TCCACAGGCGTCACCCG-GAAATCTCCATCGTGCTCCTTCTCTTCCTGGTGGTTCTCAGT 958
Query 938 CGAACTTTTCAGCTCCAAACGCCTCTCCGTTGTCGAATTCTACTTTCCATCTCTCGGGAT 997
|| || || || | || | || || |||| |||||| ||| ||||| || ||||
Sbjct 959 TGACCTATT---CTGC--AC-CTTCCCCACTGTCAAATTCTGGTTTTCATCTTTCAGGAT 1012
Query 998 TGTCACATGGACCGTCGCATTATGGTAATAATTTGGCTAGATATGCCTCATGTGGTCCTA 1057
|||| || || || | || ||||||| ||||||||||||||||||||| || |||||||
Sbjct 1013 TGTCGCAAGGGCC--C-CACTATGGTAGTAATTTGGCTAGATATGCCTCGTGCGGTCCTA 1069
Query 1058 CTCTTGGTAACATGGTGCAACAACCTCCTCATTGGGTTACCGACCCCGGCCTTCTCCACG 1117
| ||||||||||||||| ||| |||||||||||||| || || || ||||| ||||
Sbjct 1070 CGCTTGGTAACATGGTG---CAA---CCTCATTGGGTTACTGATCCTGGTCTTCTACACG 1123
Query 1118 GTGATCATTCCGCG-TTGTTACACAGTCTAATGCAACAGCAACATCTCCAACAACTGCCT 1176
| |||||||| | | || ||||| | ||| ||| | | ||||| | |||||| |||||
Sbjct 1124 GAGATCATTCTG-GTTTATTACATAATCTGGTGC-A-A-CAACAGCAGCAACAATTGCCT 1179
Query 1177 CCTCGGAATGGTTTTACT-TCACAACAGTTGATATCTCTTCAGCAGAGACAATCTTTA-G 1234
||||| |||| ||| | || ||||| ||| | | || |||||||||||||| || |
Sbjct 1180 CCTCGAAATGCCATTA-TGTCGCAACATTTGCTCGCCCTCCAGCAGAGACAATC-GTATG 1237
Query 1235 CTCATCTTGCTGCATTACAATCTCAGCTATATAGTTCTTATCCTTCTCCATCACATAAAG 1294
|||| ||||| || |||| || || || |||||||| |||||||| ||||||| |||||
Sbjct 1238 CTCAGCTTGCGGCGCTACAGTCCCAACTGTATAGTTCCTATCCTTCGCCATCACGTAAAG 1297
Query 1295 -CTCTTTTCGGGGTTGGTGAAGTAAGGGAACACAAACATAAGTCGTCTCATCGAAGTCGA 1353
| ||||| || ||||||||||| |||||||||||||||||||| |||||| ||||||||
Sbjct 1298 TCCCTTTT-GGAGTTGGTGAAGTTAGGGAACACAAACATAAGTCATCTCATAGAAGTCGA 1356
Query 1354 AAGAACAGAGGTGGTATCTCTCAACAGACATCAGATTTAGCTAGCCAGAAAAGCGAAAGC 1413
||||||||| || ||||||||||| ||||||| |||||| |||||||| |||||
Sbjct 1357 AAGAACAGA---GGCCTCTCTCAACAGGCATCAGACGCAGCTAGTCAGAAAAGTGAAAGT 1413
Query 1414 GGATTGCAGTTTAGATCAAAGTACATGACTTCAGAAGAGATAGAGAGTATTCTCAAGATG 1473
||| ||||||||||||||||| |||||||||||||||| |||||| |||| |||||||||
Sbjct 1414 GGACTGCAGTTTAGATCAAAGCACATGACTTCAGAAGAAATAGAGGGTATACTCAAGATG 1473
Query 1474 CAGCATTCTAATTCACACAGTAGTGA-CCCTTATGTCAATGATTATTACCACCAAGCTCG 1532
|||||||| ||||||||||| | ||| ||| |||||||||||||||||||||||||||
Sbjct 1474 CAGCATTCCAATTCACACAGCAATGATCCC-TATGTCAATGATTATTACCACCAAGCTAA 1532
Query 1533 GCTTGCGAAAAAGTCAT-CCGGATC-AAGAACAAAGC-CTCAGTTGTATCCTTCTCATTT 1589
|||||| || ||||| | ||||||| || | | || | |||| || |||||| |||| ||
Sbjct 1533 GCTTGCCAAGAAGTC-TGCCGGATCTAA-AGC-AATCTCTCACTTCTATCCTGCTCAGTT 1589
Query 1590 GAAGGATCACCAATCTCGGTCGCGGAATAGTTCTGATCAGCAACCACAAGTTCATGTTGA 1649
|||||| ||||| ||||||| || ||||||||||| ||||| |||||||||||||| ||
Sbjct 1590 GAAGGACCACCAGCCTCGGTCCCGTAATAGTTCTGAACAGCATCCACAAGTTCATGTAGA 1649
Query 1650 TGCTCTTGGAAAGATTACACTTCCTTCTATTTGCAGACCACGA-G-CTCTACTCGAGGTT 1707
||||||||| |||||||||||||||||| | |||| |||| | | || | || ||||||
Sbjct 1650 TGCTCTTGGTAAGATTACACTTCCTTCTGTCCGCAGGCCAC-ATGCCT-TGCTTGAGGTT 1707
Query 1708 GA--C-TCTCC-----T---C-CT---AGC-----TC-T---GG-TCA--TAAGCATCTT 1740
|| | ||||| | | | ||| || | || ||| || ||| ||
Sbjct 1708 GACTCTTCTCCTGGTTTAAACGATGGAAGCGGGGATCATAAAGGCTCAGGAAAACAT-TT 1766
Query 1741 -GAAGATGAGCCTCTTGTTGCAGCTAGAGTCACAATTGAAGATGCT-TTCGGAGTTCTTA 1798
||| | || ||||| ||||||||||| || ||||||||||||||| || ||||||||||
Sbjct 1767 GGAACAGGAACCTCTCGTTGCAGCTAGGGTTACAATTGAAGATGCTCTT-GGAGTTCTTA 1825
Query 1799 TCGATATAGTTGACATTGATAGGACTCTTC--AATTCAACCGGCCACAAGACGGTGGTGC 1856
| || |||||||||||||| |||||||| | ||| ||| | || || ||||| |||||
Sbjct 1826 TTGACATAGTTGACATTGACAGGACTCTCCAAAATACAA--GACCCCAGGACGGAGGTGC 1883
Query 1857 ACAGCTCAGGAGAAAACGGCAGATCCTTCTTGAAGGATTAGCAACTTCACTTCAACTTGT 1916
|| |||| |||||| ||||| ||||| || ||||||||||| || ||||||||||||
Sbjct 1884 CCAACTCAAGAGAAAGCGGCAAATCCTGCTAGAAGGATTAGCGACAGCACTTCAACTTGC 1943
Query 1917 TGATCCTTTTAGCAAAACTGGTCAGAAAACC-GGATTGACCACAAAGGATGATATCGTGT 1975
|||||| || |||||||| ||||||||| || ||| |||| | ||||||||||| || |
Sbjct 1944 TGATCCGTTCAGCAAAACCGGTCAGAAATCCGGGA-TGACTGCTAAGGATGATATTGTCT 2002
Query 1976 TTCTCCGCATAACGACTCTTCCTAAGGGTCGGAAATTGCTGACAAAGTATCTACAGCTTC 2035
|||| || ||| ||||||| || ||||||||||||||||| |||||||||||||| ||||
Sbjct 2003 TTCTACGTATAGCGACTCTCCCCAAGGGTCGGAAATTGCTTACAAAGTATCTACAACTTC 2062
Query 2036 TTGTTCCGGGTACTGAGATCGCGCGGGTTGTCTGTATGGCTGTATTCCGCCACCTGAGGT 2095
| ||||| ||||||||||| || || ||||||||||||||| ||||||||||| |||| |
Sbjct 2063 TAGTTCCAGGTACTGAGATTGCTCGAGTTGTCTGTATGGCTATATTCCGCCACTTGAGAT 2122
Query 2096 TTCTATTCGGTGGCCTACCGTCAGATAGC-CTTGCAGCAGAGACGATAGCTAATCTTGCT 2154
|||| || || ||||| || ||||||| | || ||||||||||||||| ||||||||||
Sbjct 2123 TTCTGTTTGGCGGCCTGCCTTCAGATA-CTCTAGCAGCAGAGACGATATCTAATCTTGCC 2181
Query 2155 AAAGCAGTTACGGTTTGTGTTCAAGCAATGGACCTCCGAGCATTGAGTGCTTGTCTTGCA 2214
|||||||| |||||||| |||||||| |||||||| |||||| |||||||||| || |||
Sbjct 2182 AAAGCAGTCACGGTTTGCGTTCAAGCCATGGACCTTCGAGCACTGAGTGCTTGCCTCGCA 2241
Query 2215 GCTGTTGTTTGCTCGTCAGAACAGCCACCTCTCCGTCCAATAGGAAGTTCTTCCGGGGAC 2274
||||| ||||| || ||||| ||||||||||| ||||| || ||||||||| | |||||
Sbjct 2242 GCTGTAGTTTGTTCTTCAGAGCAGCCACCTCTGCGTCCTATTGGAAGTTCTGCTGGGGAT 2301
Query 2275 GGAGCATCGGTTGTCTTGGTATCTCTTCTTGAGAGAGCTGCTGAAGTAATAGTGGCGGTG 2334
|| || || ||||| ||| ||||||||||||||||||||||||||||| |||| ||
Sbjct 2302 GGTGCTTCAGTTGTGTTGATATCTCTTCTTGAGAGAGCTGCTGAAGTA---GTGG---TG 2355
Query 2335 GTTCCACCGCGTGTCA-GCAACCACGGGAATCCGAATGATGGACTCTGGAGAGCCTCGTT 2393
||||||| | || || ||| |||||| | |||||||| |||||||||||||| ||
Sbjct 2356 GTTCCAC-GAGT--CATGCAT----GGGAATTCTAATGATGGTCTCTGGAGAGCCTCATT 2408
Query 2394 TGATGAGTTCTTCT-CTCTTCTTACTAAATATTGCAGGAGCAAGTACGAGACAATCCATG 2452
|||||| |||||| | |||||||| ||||| ||||| |||||||| |||||||||| |
Sbjct 2409 TGATGAATTCTTCAAC-CTTCTTACCAAATACTGCAGAAGCAAGTATGAGACAATCCGCG 2467
Query 2453 GTCAGAACCACGACAATGCAGCTGATGTGTTGGAGTTAGCTATAAAGAGGGAAATGCCTG 2512
|||||||||| | | |||||| ||||| |||||| | || ||||||||||||||||| |
Sbjct 2468 GTCAGAACCAAGGGAGTGCAGCGGATGTTTTGGAGCTGGCGATAAAGAGGGAAATGCCCG 2527
Query 2513 CCGAGCTTTTACGTGCGAGTCTTCGTCATACTAATGAAGACCAGCGGAACT-TCTTACTT 2571
| ||||||||||| | |||||| ||||| || ||||| |||||| |||||| | ||| ||
Sbjct 2528 CTGAGCTTTTACGGGTGAGTCTGCGTCACACCAATGACGACCAGAGGAACTAT-TTA-TT 2585
Query 2572 AA-CGTTGGTCGTAGTGCATCGCCAGTTAGCGAGTCGACAACAACCCGTGCAAGTGCAAG 2630
|| | ||||||||| | ||| || |||| |||||| | | | || ||||||
Sbjct 2586 AAACTTTGGTCGTAAACCGTCGGCAATTAGTGAGTCGGCGTC------T-CA--TGCAAG 2636
Query 2631 TGGTGGTCAGATTAACTCTGAATTTGTGAGGGGTTAA 2667
||||| ||||| ||||| |||| |||||| ||||||
Sbjct 2637 GGGTGGACAGATCAACTCCGAATCTGTGAGAGGTTAA 2673
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 124714666721
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5