BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G15000.1
Length=657
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493389 jgi|Araly1|493389|fgenesh2_kg.7__2822__AT4G15000.1 961 0.0
Ahg479736 jgi|Araly1|479736|fgenesh2_kg.3__2437__AT3G22230.1 544 4e-154
Ahg930200 jgi|Araly1|930200|scaffold_302657.1 300 1e-80
> Ahg493389 jgi|Araly1|493389|fgenesh2_kg.7__2822__AT4G15000.1
Length=658
Score = 961 bits (520), Expect = 0.0
Identities = 620/665 (93%), Gaps = 20/665 (3%)
Strand=Plus/Plus
Query 1 ACTTAGGGTTCATAGCAGCCAGAGAGAGAGAC-AAGTGAGAGGGATCTACCAAACGAAGC 59
|||||||||||||||||||| |||||||||| || |||||||||||||||||||||||
Sbjct 1 ACTTAGGGTTCATAGCAGCC--AGAGAGAGACGAA--GAGAGGGATCTACCAAACGAAGC 56
Query 60 AACAATGGTGAAGTTCTTGAAGCAGAACAAGGCCGTGATCCTTCTTCAAGGACGTTACGC 119
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 57 AACAATGGTGAAGTTCTTGAAGCAGAACAAGGCCGTGATCCTTCTTCAAGGTCGTTACGC 116
Query 120 CGGAAAGAAAGCCGTCATCATCAAATCCTTCGACGACGGTAA-CCGTGATCGTCCTTACG 178
||||||||||||||||||||||||||||||||||||||| || |||||||||| | ||||
Sbjct 117 CGGAAAGAAAGCCGTCATCATCAAATCCTTCGACGACGG-AACCCGTGATCGTGCATACG 175
Query 179 GACACTGCCTCGTCGCCGGACTCAAGAAGTACCCGAGCAAAGTCATCCGCAAAGACTCAG 238
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 176 GACACTGCCTCGTCGCCGGACTGAAGAAGTACCCAAGCAAAGTCATCCGCAAAGACTCAG 235
Query 239 CTAAGAAGACAGCTAAGAAATCTAGGGTTAAGTGTTTCATCAAGCTTGTTAATTACCAGC 298
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 CGAAGAAGACAGCTAAGAAATCTAGGGTTAAGTGTTTCATCAAGCTTGTTAATTACCAGC 295
Query 299 ATCTGATGCCTACTCGTTACACACTCGACGTGGATCTCAAGGAAGTGGCGACTCTTGATG 358
||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 296 ATCTGATGCCTACACGTTACACACTAGACGTGGATCTCAAGGAAGTTGCGACTCTTGATG 355
Query 359 CTCTTCAGAGTAAGGATAAGAAGGTTGCTGCTCTTAAGGAAGCTAAGGCTAAGCTTGAGG 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 CTCTTCAGAGTAAGGATAAGAAGGTTGCTGCTCTTAAGGAAGCTAAGGCTAAGCTTGAGG 415
Query 419 AGAGGTTCAAAACCGGTAAGAACAGATGGTTCTTTACCAAGCTCAGGTTCTGAAGAAATT 478
|||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 416 AGAGGTTCAAGACTGGTAAGAACAGATGGTTCTTTACTAAGCTCAGGTTCTGAAGAAATC 475
Query 479 TTCTATTTCGTGAGGAATTCATTTTGAGCGTTTTGTTATCG---T-----GT-TTTTTAG 529
|| |||||| ||||| |||||||||| ||||||||| | | || |||||||
Sbjct 476 TTGGATTTCGAAAGGAAGACATTTTGAGCTTTTTGTTATTGAAATTTATCGTATTTTTAG 535
Query 530 TTTCTAGGGTTCATTTCCCATGGTGAAAAATGTGGATCCTGTTTTGGATTGTGGAAGATG 589
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 536 TTTCTAGGGTTCATTTCCTATGGTGAAAAATGTGGATCCTGTTTTGGATTGTGGAAGATG 595
Query 590 TTTTGTTGAAGTTTGGATTATGGATTT-GATCTTTTATTTTGATTCTCTAATGCATTCTT 648
|||||||||| |||||||||||||||| | ||||||||||||||||||| |||||| ||
Sbjct 596 TTTTGTTGAAATTTGGATTATGGATTTTGC-CTTTTATTTTGATTCTCTATTGCATT-TT 653
Query 649 -ATTT 652
||||
Sbjct 654 GATTT 658
> Ahg479736 jgi|Araly1|479736|fgenesh2_kg.3__2437__AT3G22230.1
Length=607
Score = 544 bits (294), Expect = 4e-154
Identities = 381/423 (90%), Gaps = 6/423 (1%)
Strand=Plus/Plus
Query 56 AAGCAACAATGGTGAAG-TTCTTGAAGCAGAACAAGGCCGTGATCCTTCTTCAAGGACGT 114
||| ||||||||||||| ||| ||||||||||||||||||||||||| |||||||| |||
Sbjct 50 AAGAAACAATGGTGAAGTTTC-TGAAGCAGAACAAGGCCGTGATCCTCCTTCAAGGCCGT 108
Query 115 TACGCCGGAAAGAAAGCCGTCATCATCAAATCCTTCGACGACGGTAACC-GTGATCGTCC 173
|||||||| ||||| || || ||||||||||||||||||||||| |||| |||| ||||
Sbjct 109 TACGCCGGTAAGAAGGCAGTGATCATCAAATCCTTCGACGACGG-AACCAGTGACCGTCG 167
Query 174 TTACGGACACTGCCTCGTCGCCGGACTCAAGAAGTACCCGAGCAAAGTCATCCGCAAAGA 233
||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||
Sbjct 168 TTACGGACACTGCCTCGTCGCCGGACTGAAGAAGTATCCAAGCAAAGTCATCCGCAAAGA 227
Query 234 CTCAGCTAAGAAGACAGCTAAGAAATCTAGGGTTAAGTGTTTCATCAAGCTTGTTAATTA 293
|||||| |||||||| || ||||| ||| | || || ||||||||||| || || |||||
Sbjct 228 CTCAGCGAAGAAGACGGCGAAGAAGTCTCGAGTGAAATGTTTCATCAAACTCGTGAATTA 287
Query 294 CCAGCATCTGATGCCTACTCGTTACACACTCGACGTGGATCTCAAGGAAGTGGCGACTCT 353
|||||||||||||||||| |||||||| ||||| || ||||| |||||||| ||||||||
Sbjct 288 CCAGCATCTGATGCCTACACGTTACACGCTCGATGTAGATCTGAAGGAAGTTGCGACTCT 347
Query 354 TGATGCTCTTCAGAGTAAGGATAAGAAGGTTG-CTGCTCTTAAGGAAGCTAAGGCTAAGC 412
|||||||||| ||||||| |||||||||| || |||||||||||||||||||||||||||
Sbjct 348 TGATGCTCTTAAGAGTAAAGATAAGAAGG-TGACTGCTCTTAAGGAAGCTAAGGCTAAGC 406
Query 413 TTGAGGAGAGGTTCAAAACCGGTAAGAACAGATGGTTCTTTACCAAGCTCAGGTTCTGAA 472
|||||||||||||||| || || |||||||| ||||||||||| ||||||||||||||||
Sbjct 407 TTGAGGAGAGGTTCAAGACTGGCAAGAACAGGTGGTTCTTTACTAAGCTCAGGTTCTGAA 466
Query 473 GAA 475
|||
Sbjct 467 GAA 469
> Ahg930200 jgi|Araly1|930200|scaffold_302657.1
Length=307
Score = 300 bits (162), Expect = 1e-80
Identities = 232/265 (88%), Gaps = 7/265 (3%)
Strand=Plus/Plus
Query 64 ATGGTGAAG-TTCTTGAAGCAGAACAAGGCCGTGATCCTTCTTCAAGGACGTTACGCCGG 122
||||||||| ||| || | ||||||| ||||||||||| |||||||| |||||||||||
Sbjct 22 ATGGTGAAGTTTC-TG-A--AGAACAAAGCCGTGATCCTCCTTCAAGGCCGTTACGCCGG 77
Query 123 AAAGAAAGCCGTCATCATCAAATCCTTCGACGACGGTAAC-CGTGATCGTCCTTACGGAC 181
|||||| || || ||||||||||||||||||||||| ||| |||| |||| ||||||||
Sbjct 78 AAAGAAGGCAGTGATCATCAAATCCTTCGACGACGG-AACGAGTGACCGTCGTTACGGAC 136
Query 182 ACTGCCTCGTCGCCGGACTCAAGAAGTACCCGAGCAAAGTCATCCGCAAAGACTCAGCTA 241
| |||||| |||||||||| |||||||| || |||||||||||||||||||||||||| |
Sbjct 137 ATTGCCTCATCGCCGGACTGAAGAAGTATCCAAGCAAAGTCATCCGCAAAGACTCAGCGA 196
Query 242 AGAAGACAGCTAAGAAATCTAGGGTTAAGTGTTTCATCAAGCTTGTTAATTACCAGCATC 301
|||| || || |||||||||| || || |||||||||||| | || |||||||||||||
Sbjct 197 AGAATACGGCGAAGAAATCTATAGTGAAATGTTTCATCAAGGTCGTGAATTACCAGCATC 256
Query 302 TGATGCCTACTCGTTACACACTCGA 326
||||||||||||||||||| |||||
Sbjct 257 TGATGCCTACTCGTTACACGCTCGA 281
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24093683544
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5