BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G15010.1 Length=1575 Score E Sequences producing significant alignments: (Bits) Value Ahg493386 jgi|Araly1|493386|fgenesh2_kg.7__2819__AT4G15010.1 2013 0.0 > Ahg493386 jgi|Araly1|493386|fgenesh2_kg.7__2819__AT4G15010.1 Length=1424 Score = 2013 bits (1090), Expect = 0.0 Identities = 1276/1365 (93%), Gaps = 16/1365 (1%) Strand=Plus/Plus Query 4 AACGACGTCGTCTTTTCTTCTCCGATTAGCGTCGGTCGTCTTCTTCGTCTTCTC-TCTGT 62 |||| ||||||||| |||||||||||||||||| |||||||||||||||||||| | | Sbjct 1 AACGGCGTCGTCTTCTCTTCTCCGATTAGCGTCAGTCGTCTTCTTCGTCTTCTCAGGTCT 60 Query 63 CGCTGATCTGGGTTTTGCTTCAACGTGAAACATCTTTGAGGTTGATGATGAGGTTTCTGT 122 | |||||||||||||||||||||||||||||| | |||| |||| ||||| |||||||| Sbjct 61 CTCTGATCTGGGTTTTGCTTCAACGTGAAACAGCACTGAGTTTGAAGATGAAGTTTCTGT 120 Query 123 TTACTTAATATCCTGTGAGAGAAAAC-TCTTCTTGACTTG-AGTGTTGCTGACAAAAACG 180 ||||||||||||||||||||| |||| | || ||||| || || |||||||||||||||| Sbjct 121 TTACTTAATATCCTGTGAGAG-AAACGTATTTTTGAC-TGTAGAGTTGCTGACAAAAACG 178 Query 181 -TATAGGTATATGTACATTTGTTTTCGCTGAGG-----C-T--AAAGATGGATAAGCTTC 231 ||||||||||||||||||||||||||| |||| | | ||||||||||||||||| Sbjct 179 TTATAGGTATATGTACATTTGTTTTCGCAGAGGCATTTCGTCGAAAGATGGATAAGCTTC 238 Query 232 TTGAGAATCATCAGTTTGCGACACATGCCATCGCTGCCTCGGCCTCTGTCTCGTTAGGAA 291 |||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||| Sbjct 239 TTGAGAATCATCAGTTTGCGACGCATGCCATCGCCGCCTCGGCATCTGTCTCGTTAGGAA 298 Query 292 CTGCTCTCGCTTATCCTTTAGATACCATCAAAACCATTATCCAGGTTGGTTCAGGACCCA 351 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct 299 CTGCTCTCGCTTATCCTTTAGATACCATCAAAACTATAATCCAGGTTGGTTCAGGACCCA 358 Query 352 ATAAGAAATTAAGCTCCTTTCAAGTTTTTAATAGAGTTCTTCGATTCTCTGGCTATTCAG 411 |||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||| Sbjct 359 ATAAGAAATTAAGCTCCTTTCAAGTTGTGAATAGAGTTCTCCGATTCTCTGGCTATTCAG 418 Query 412 GTCTGTACAGTGGTCTTGGATCGTTAACTTTAGGAAGAATTTCTGGTTTTGGTGCAAGGT 471 ||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||| Sbjct 419 GTCTGTACAGTGGTCTTGGATCGTTAACTTTAGGAAGAATTTCAGGTGTTGGTGGAAGGT 478 Query 472 TTGGTGTCTATGAGATTCTAACAGCTTTCTACAAAGATGGTCGACATGATAACTACGTGA 531 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 479 TTGGTGTCTATGAGATTCTAACAGCTTTCTACAAAGATGGTCGACATGATAACTATGTGA 538 Query 532 GTGTTGGTGAAGCTTTTCTGGCTGGTCTGGTGGGAGGTGCAGCAGAAACAGTGATGACTT 591 |||| ||||| |||||||||||||| |||||||||||||||| |||||||||||||| | Sbjct 539 GTGTCGGTGAGGCTTTTCTGGCTGGGATGGTGGGAGGTGCAGCTGAAACAGTGATGACAT 598 Query 592 CTCCATTTGAGCTAATCAAAGTCCGAAAACAAGTGACTGCTGCATCACGGGCTCCAAATG 651 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 599 CTCCATTTGAGCTAATCAAAGTCCGAAAACAAGTGACTGCTGCATCACGAGCTCCAAATG 658 Query 652 CTTCCGCTGTTGCAGAGACCGCACCGGTCTCACCCATGATCACAAAACTGCTAAGAAGAT 711 || | ||||||||||| ||||||||||| ||||||||| |||||||| ||||||| |||| Sbjct 659 CTACAGCTGTTGCAGAAACCGCACCGGTTTCACCCATGCTCACAAAATTGCTAAGGAGAT 718 Query 712 ACACTCTTGATGTAAAGTCATTGACACAAACAGTCAGTCTCTTATCCGTCTTAAATCACA 771 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 719 ACACTCTTGATGTAAAGTCATTGACACAAACAGTCAGTCTCTTATCTGTCTTAAATCACA 778 Query 772 AACACCCAAACATGACAGCTGCTTTGCAAGAGTACCCTTGGATGATGACTGGAACAGGAA 831 |||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||| Sbjct 779 AACACCCAAACATGACCGCCGCTTTGCAAGAGTACCCGTGGATGATGACTGGAACAGGAA 838 Query 832 ACCCACCATCAGCCATGGATGTTAAGAGACCGCTCGATGTTGCATCACTTGAAGGATATA 891 |||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||| Sbjct 839 ACCCGCCATCAGCCATGGATGTTAAAAGACCGCTCGATGTTGCATCGCTTGAAGGATATA 898 Query 892 GAGCTTTATGGAGGAATCTACGTTCAGGTCTTATAAGAGATTGTATTTACGGTGGAGTAT 951 ||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||| | Sbjct 899 GAGCTTTATGGAGGAATCTACGTTCGGGTCTTGTAAGAGATTGTATTTACGGAGGAGTGT 958 Query 952 TCTTTTCAACATGGCAGTTTCTTCACGAGGCAATGGTCGGTTGGAAAGCTGTTGGGATGA 1011 |||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||| Sbjct 959 TCTTCTCAACATGGCAGTTTCTTCACGAGGCAATGGTCGGTTGGAAAGCCGTCGGGATGA 1018 Query 1012 ATCCTCTGCCCAGTTCTGAAGAAGAAGTTGGACCTTTATCTCCGGTAGCCATTAGCCTTG 1071 |||||||||||||||||||||||||| ||||||||||||| || |||||||||||| ||| Sbjct 1019 ATCCTCTGCCCAGTTCTGAAGAAGAAATTGGACCTTTATCACCAGTAGCCATTAGCGTTG 1078 Query 1072 CTGCTGGGATATCTGGTGCCGTTGCAGCTGCAGCATCACATAGCTTTGACACAGCAAGAA 1131 | |||||| | ||||||||| |||||||||||||||||||||||||||| |||||||||| Sbjct 1079 CCGCTGGGTTTTCTGGTGCCATTGCAGCTGCAGCATCACATAGCTTTGATACAGCAAGAA 1138 Query 1132 CACGTGCACAGTGTGTAATATTGCCAAAGTATACAGCAAAGGAGAGGAAGTTTCTAAAAT 1191 |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| || Sbjct 1139 CACGTGCACAGTGTGTAATATTGCCAAAATATACAGCAAAAGAGAGGAAGTTTCTAAGAT 1198 Query 1192 GGAATAAACCAGGGAAGAGATTAGAGAGATGGACAGGAATCCATCCTACAGACAGAAATC 1251 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1199 GGAATAAACCAGGGAAGAGATTAGAGAGATGGACAGGAATCCATCCTACAGACAGAAATC 1258 Query 1252 TCTTGTTCCGAGGTAT-TGGGATGAGGATGGCTCGAAGCTCTGTTGCATCGACTGTGATC 1310 || |||||||||| || ||| || ||||||||||||||||||||||||||||| |||||| Sbjct 1259 TCCTGTTCCGAGGAATCTGG-ATAAGGATGGCTCGAAGCTCTGTTGCATCGACGGTGATC 1317 Query 1311 GTAGGAAGCTATTACTTAGCTGTCGATTTATTGGTTCCCAAGTGA 1355 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1318 GTAGGAAGCTATTACTTAGCTGTCGATTTATTGGTTCCCAAGTGA 1362 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59001789505 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5