BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G15010.1
Length=1575
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493386 jgi|Araly1|493386|fgenesh2_kg.7__2819__AT4G15010.1 2013 0.0
> Ahg493386 jgi|Araly1|493386|fgenesh2_kg.7__2819__AT4G15010.1
Length=1424
Score = 2013 bits (1090), Expect = 0.0
Identities = 1276/1365 (93%), Gaps = 16/1365 (1%)
Strand=Plus/Plus
Query 4 AACGACGTCGTCTTTTCTTCTCCGATTAGCGTCGGTCGTCTTCTTCGTCTTCTC-TCTGT 62
|||| ||||||||| |||||||||||||||||| |||||||||||||||||||| | |
Sbjct 1 AACGGCGTCGTCTTCTCTTCTCCGATTAGCGTCAGTCGTCTTCTTCGTCTTCTCAGGTCT 60
Query 63 CGCTGATCTGGGTTTTGCTTCAACGTGAAACATCTTTGAGGTTGATGATGAGGTTTCTGT 122
| |||||||||||||||||||||||||||||| | |||| |||| ||||| ||||||||
Sbjct 61 CTCTGATCTGGGTTTTGCTTCAACGTGAAACAGCACTGAGTTTGAAGATGAAGTTTCTGT 120
Query 123 TTACTTAATATCCTGTGAGAGAAAAC-TCTTCTTGACTTG-AGTGTTGCTGACAAAAACG 180
||||||||||||||||||||| |||| | || ||||| || || ||||||||||||||||
Sbjct 121 TTACTTAATATCCTGTGAGAG-AAACGTATTTTTGAC-TGTAGAGTTGCTGACAAAAACG 178
Query 181 -TATAGGTATATGTACATTTGTTTTCGCTGAGG-----C-T--AAAGATGGATAAGCTTC 231
||||||||||||||||||||||||||| |||| | | |||||||||||||||||
Sbjct 179 TTATAGGTATATGTACATTTGTTTTCGCAGAGGCATTTCGTCGAAAGATGGATAAGCTTC 238
Query 232 TTGAGAATCATCAGTTTGCGACACATGCCATCGCTGCCTCGGCCTCTGTCTCGTTAGGAA 291
|||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||
Sbjct 239 TTGAGAATCATCAGTTTGCGACGCATGCCATCGCCGCCTCGGCATCTGTCTCGTTAGGAA 298
Query 292 CTGCTCTCGCTTATCCTTTAGATACCATCAAAACCATTATCCAGGTTGGTTCAGGACCCA 351
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 299 CTGCTCTCGCTTATCCTTTAGATACCATCAAAACTATAATCCAGGTTGGTTCAGGACCCA 358
Query 352 ATAAGAAATTAAGCTCCTTTCAAGTTTTTAATAGAGTTCTTCGATTCTCTGGCTATTCAG 411
|||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||
Sbjct 359 ATAAGAAATTAAGCTCCTTTCAAGTTGTGAATAGAGTTCTCCGATTCTCTGGCTATTCAG 418
Query 412 GTCTGTACAGTGGTCTTGGATCGTTAACTTTAGGAAGAATTTCTGGTTTTGGTGCAAGGT 471
||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||
Sbjct 419 GTCTGTACAGTGGTCTTGGATCGTTAACTTTAGGAAGAATTTCAGGTGTTGGTGGAAGGT 478
Query 472 TTGGTGTCTATGAGATTCTAACAGCTTTCTACAAAGATGGTCGACATGATAACTACGTGA 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 479 TTGGTGTCTATGAGATTCTAACAGCTTTCTACAAAGATGGTCGACATGATAACTATGTGA 538
Query 532 GTGTTGGTGAAGCTTTTCTGGCTGGTCTGGTGGGAGGTGCAGCAGAAACAGTGATGACTT 591
|||| ||||| |||||||||||||| |||||||||||||||| |||||||||||||| |
Sbjct 539 GTGTCGGTGAGGCTTTTCTGGCTGGGATGGTGGGAGGTGCAGCTGAAACAGTGATGACAT 598
Query 592 CTCCATTTGAGCTAATCAAAGTCCGAAAACAAGTGACTGCTGCATCACGGGCTCCAAATG 651
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 599 CTCCATTTGAGCTAATCAAAGTCCGAAAACAAGTGACTGCTGCATCACGAGCTCCAAATG 658
Query 652 CTTCCGCTGTTGCAGAGACCGCACCGGTCTCACCCATGATCACAAAACTGCTAAGAAGAT 711
|| | ||||||||||| ||||||||||| ||||||||| |||||||| ||||||| ||||
Sbjct 659 CTACAGCTGTTGCAGAAACCGCACCGGTTTCACCCATGCTCACAAAATTGCTAAGGAGAT 718
Query 712 ACACTCTTGATGTAAAGTCATTGACACAAACAGTCAGTCTCTTATCCGTCTTAAATCACA 771
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 719 ACACTCTTGATGTAAAGTCATTGACACAAACAGTCAGTCTCTTATCTGTCTTAAATCACA 778
Query 772 AACACCCAAACATGACAGCTGCTTTGCAAGAGTACCCTTGGATGATGACTGGAACAGGAA 831
|||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||
Sbjct 779 AACACCCAAACATGACCGCCGCTTTGCAAGAGTACCCGTGGATGATGACTGGAACAGGAA 838
Query 832 ACCCACCATCAGCCATGGATGTTAAGAGACCGCTCGATGTTGCATCACTTGAAGGATATA 891
|||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 839 ACCCGCCATCAGCCATGGATGTTAAAAGACCGCTCGATGTTGCATCGCTTGAAGGATATA 898
Query 892 GAGCTTTATGGAGGAATCTACGTTCAGGTCTTATAAGAGATTGTATTTACGGTGGAGTAT 951
||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||| |
Sbjct 899 GAGCTTTATGGAGGAATCTACGTTCGGGTCTTGTAAGAGATTGTATTTACGGAGGAGTGT 958
Query 952 TCTTTTCAACATGGCAGTTTCTTCACGAGGCAATGGTCGGTTGGAAAGCTGTTGGGATGA 1011
|||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 959 TCTTCTCAACATGGCAGTTTCTTCACGAGGCAATGGTCGGTTGGAAAGCCGTCGGGATGA 1018
Query 1012 ATCCTCTGCCCAGTTCTGAAGAAGAAGTTGGACCTTTATCTCCGGTAGCCATTAGCCTTG 1071
|||||||||||||||||||||||||| ||||||||||||| || |||||||||||| |||
Sbjct 1019 ATCCTCTGCCCAGTTCTGAAGAAGAAATTGGACCTTTATCACCAGTAGCCATTAGCGTTG 1078
Query 1072 CTGCTGGGATATCTGGTGCCGTTGCAGCTGCAGCATCACATAGCTTTGACACAGCAAGAA 1131
| |||||| | ||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 1079 CCGCTGGGTTTTCTGGTGCCATTGCAGCTGCAGCATCACATAGCTTTGATACAGCAAGAA 1138
Query 1132 CACGTGCACAGTGTGTAATATTGCCAAAGTATACAGCAAAGGAGAGGAAGTTTCTAAAAT 1191
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||
Sbjct 1139 CACGTGCACAGTGTGTAATATTGCCAAAATATACAGCAAAAGAGAGGAAGTTTCTAAGAT 1198
Query 1192 GGAATAAACCAGGGAAGAGATTAGAGAGATGGACAGGAATCCATCCTACAGACAGAAATC 1251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 GGAATAAACCAGGGAAGAGATTAGAGAGATGGACAGGAATCCATCCTACAGACAGAAATC 1258
Query 1252 TCTTGTTCCGAGGTAT-TGGGATGAGGATGGCTCGAAGCTCTGTTGCATCGACTGTGATC 1310
|| |||||||||| || ||| || ||||||||||||||||||||||||||||| ||||||
Sbjct 1259 TCCTGTTCCGAGGAATCTGG-ATAAGGATGGCTCGAAGCTCTGTTGCATCGACGGTGATC 1317
Query 1311 GTAGGAAGCTATTACTTAGCTGTCGATTTATTGGTTCCCAAGTGA 1355
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 GTAGGAAGCTATTACTTAGCTGTCGATTTATTGGTTCCCAAGTGA 1362
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59001789505
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5