BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G15020.1

Length=3020
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg890810 jgi|Araly1|890810|Al_scaffold_0007_2796                    241    3e-62


> Ahg890810 jgi|Araly1|890810|Al_scaffold_0007_2796
Length=213

 Score =  241 bits (130),  Expect = 3e-62
 Identities = 154/166 (93%), Gaps = 0/166 (0%)
 Strand=Plus/Plus

Query  4    ACGGGCCGGGTCGATTTCTCCGCCATCGCAATCCTCCACCCTCCTCTGATTCTCTCCGCC  63
            |||||||||||||||||||||| ||| ||||||||||| ||||||||||||| |||||||
Sbjct  48   ACGGGCCGGGTCGATTTCTCCGACATTGCAATCCTCCATCCTCCTCTGATTCCCTCCGCC  107

Query  64   GTTCGTCGGAAATCTCCATCTCCGGCTGATTCCAGCTTCCTCTTCTCCAGAACCGAAGCT  123
            ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| 
Sbjct  108  GTTAGTCGGAAATCTCCATCTCCGGTTGATTCCAGCTTCCTCTTCTCCAGAACCGAAGCA  167

Query  124  ACTGTACCGGAATTTTATCACTTTCCCCGAAACCGATTCACCGTAA  169
            | | ||||||||||| |||||||||||||||||||||||  |||||
Sbjct  168  ATTCTACCGGAATTTCATCACTTTCCCCGAAACCGATTCTTCGTAA  213



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 114042193530


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5