BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G15020.1 Length=3020 Score E Sequences producing significant alignments: (Bits) Value Ahg890810 jgi|Araly1|890810|Al_scaffold_0007_2796 241 3e-62 > Ahg890810 jgi|Araly1|890810|Al_scaffold_0007_2796 Length=213 Score = 241 bits (130), Expect = 3e-62 Identities = 154/166 (93%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 4 ACGGGCCGGGTCGATTTCTCCGCCATCGCAATCCTCCACCCTCCTCTGATTCTCTCCGCC 63 |||||||||||||||||||||| ||| ||||||||||| ||||||||||||| ||||||| Sbjct 48 ACGGGCCGGGTCGATTTCTCCGACATTGCAATCCTCCATCCTCCTCTGATTCCCTCCGCC 107 Query 64 GTTCGTCGGAAATCTCCATCTCCGGCTGATTCCAGCTTCCTCTTCTCCAGAACCGAAGCT 123 ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 108 GTTAGTCGGAAATCTCCATCTCCGGTTGATTCCAGCTTCCTCTTCTCCAGAACCGAAGCA 167 Query 124 ACTGTACCGGAATTTTATCACTTTCCCCGAAACCGATTCACCGTAA 169 | | ||||||||||| ||||||||||||||||||||||| ||||| Sbjct 168 ATTCTACCGGAATTTCATCACTTTCCCCGAAACCGATTCTTCGTAA 213 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 114042193530 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5