BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G15030.2
Length=1011
Score E
Sequences producing significant alignments: (Bits) Value
Ahg890808 jgi|Araly1|890808|Al_scaffold_0007_2794 961 0.0
> Ahg890808 jgi|Araly1|890808|Al_scaffold_0007_2794
Length=738
Score = 961 bits (520), Expect = 0.0
Identities = 609/650 (94%), Gaps = 14/650 (2%)
Strand=Plus/Plus
Query 12 ATGACTTCTTCGGCGGCGATCAGATCTGACATCTACGACAGAGAAGAACGCAAGCATCGT 71
||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
Sbjct 1 ATGACTTCTTCGGCGGCGATCAGATCTCACATCTACGACAGAGAAGAACGC-A--A---- 53
Query 72 GTGTGCAGGCAATACCAAGCACATATTCGTGGCCTGAATGCTTACGAGCGGCATAAGAAG 131
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 54 ----GCA-GCAATACCAAGCACATATTCGTGGTCTGAATGCTTACGAGCGGCATAAGAAG 108
Query 132 TTCTTGAAAGACTACGTTCGATTTTATGGGAAGGATAAGCCTGCAGAAGTTAAGTTACCG 191
|||||||||||||||||||| |||||||||||||||||||| || ||||| || ||||||
Sbjct 109 TTCTTGAAAGACTACGTTCGTTTTTATGGGAAGGATAAGCCAGCTGAAGTCAAATTACCG 168
Query 192 GTTAAAACTGATCAGGACACACTACGAGAAGGATACAGGTTTATACGTTCTGAAGAAGAT 251
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 169 GTTAAAACCGATCAGGACACACTACGAGAAGGATACCGGTTTATACGTTCTGAAGAAGAT 228
Query 252 GATTTGGATCCTTCTTGGGAGCAAAGACTGGTGAAACGATACTATGATAAGCTTTTTAAA 311
||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 229 GATTTAAATCCTTCTTGGGAGCAAAGATTGGTGAAGCGATACTATGATAAGCTTTTTAAA 288
Query 312 GAATACTGTATAGCTGACATGTCAAGGTACAAGACTGGTAAGATGGGTTTAAGATGGAGA 371
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 289 GAATACTGTATAGCTGACATGTCAAGATACAAGACTGGTAAGATTGGTTTAAGATGGAGA 348
Query 372 ACAGAAAAGGAAGTAATGACTGGGAAAGGGCAGTTTATGTGTGGGAGCAAACATTGTGAT 431
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 349 ACGGAAAAGGAAGTAATGACTGGGAAAGGGCAGTTTTTGTGTGGGAGCAAACATTGTGAT 408
Query 432 GAAAAGGAAGGGTTAGCAAGCTATGAGGTGAATTTTTCTTATCATGAAGCTGGAGAAGAT 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 409 GAAAAGGAAGGGTTAGCAAGCTATGAGGTGAATTTTTCTTATCATGAAGCTGGAGAAGAT 468
Query 492 AAACAAGCTCTTGTAAAACTCGTAGCTTGTGAGAGATGTGCTGAGAAG-TTATACTACaa 550
|| ||||| ||||||||||||||||||||| |||||||||| |||||| || ||||||||
Sbjct 469 AAGCAAGCCCTTGTAAAACTCGTAGCTTGTAAGAGATGTGCAGAGAAGCTT-TACTACAA 527
Query 551 aaaaagaaaggagggtgaaagatcagagagtaaagaaaagaaaaaacagaaacgaaaaCG 610
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 528 AAAAAGAAAGGAGGGTGAAAGATCAGAGAGTAAAGAAAAGAGAAAGCAGAAACGAAAACG 587
Query 611 GAGTAAATCACACAGTGAAGATGACACAGACgaagaggagaaaagaaaag 660
|||| |||||||||||||||||||||||||||||||||| | |||||||
Sbjct 588 GAGTCAATCACACAGTGAAGATGACACAGACGAAGAGGATAGGAGAAAAG 637
Score = 316 bits (171), Expect = 2e-85
Identities = 197/210 (94%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 651 aaaagaaaagagggtgaaagatcagagagtaatgaaaagaaaaaacagaaacgaaaTCGG 710
|||||||| ||||||||||||||||||||||| ||||||| ||| ||||||||||| |||
Sbjct 529 AAAAGAAAGGAGGGTGAAAGATCAGAGAGTAAAGAAAAGAGAAAGCAGAAACGAAAACGG 588
Query 711 AGTCAATCTCACAGTGAATATGACACTGACGAAGAGGATAGGAGAAAAGGGAAAACAAGA 770
|||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 589 AGTCAATCACACAGTGAAGATGACACAGACGAAGAGGATAGGAGAAAAGGGAAAACAAGA 648
Query 771 AAGTCCAAGTTGGAAAGTGCTGATAGAGAAGGCAAGGATGATGAAAACTTCGATGAATAC 830
||||||||||||||| ||| |||||||||||| ||||||||||||||||| |||||||||
Sbjct 649 AAGTCCAAGTTGGAAGGTGGTGATAGAGAAGGGAAGGATGATGAAAACTTTGATGAATAC 708
Query 831 ATGGAGGGGATGTTCCCGGGTAATGGGTGA 860
||||||||||||||||||||||| ||||||
Sbjct 709 ATGGAGGGGATGTTCCCGGGTAAGGGGTGA 738
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37589196162
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5