BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G15053.1
Length=1246
Score E
Sequences producing significant alignments: (Bits) Value
Ahg330001 jgi|Araly1|330001|fgenesh1_pm.C_scaffold_7002228 1648 0.0
Ahg890803 jgi|Araly1|890803|Al_scaffold_0007_2789 1182 0.0
Ahg890805 jgi|Araly1|890805|Al_scaffold_0007_2791 1122 0.0
Ahg946833 jgi|Araly1|946833|scaffold_703062.1 281 7e-75
> Ahg330001 jgi|Araly1|330001|fgenesh1_pm.C_scaffold_7002228
Length=1206
Score = 1648 bits (892), Expect = 0.0
Identities = 1111/1216 (91%), Gaps = 18/1216 (1%)
Strand=Plus/Plus
Query 35 ATGGAAGTGAGAGGCCCAGTGATATGGATGTTCTTAATGTGTTGCATATTTGGTCACTTA 94
||||||||||||||||||||||||||||||||||||| || || || |||||||| ||
Sbjct 1 ATGGAAGTGAGAGGCCCAGTGATATGGATGTTCTTAA--TG-TG--TA-TTGGTCACATA 54
Query 95 ATTGTAAGTCATAAGAATGACTTAGTGGAAGCCAAAAGCTTTTCAAAATCTGAAGATTTG 154
|||||||||||||| |||||||| ||||||||||| |||||||| ||||||||||||||
Sbjct 55 ATTGTAAGTCATAACAATGACTTCGTGGAAGCCAAGAGCTTTTCTAAATCTGAAGATTTA 114
Query 155 GAAATCGAGAAGAGACTACAGACTATCAACAAACCCGCCGTCAAGAACATCAAGACCATA 214
|||||||||||||||||| || |||||||||||||||| ||||||| ||||||||| |||
Sbjct 115 GAAATCGAGAAGAGACTAAAGTCTATCAACAAACCCGCTGTCAAGATCATCAAGACTATA 174
Query 215 GATGGAGAAATATACGGATGTGTGGATTTCTTCAAGCAACCAGCATTTGATCATCCTTCT 274
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 GATGGAGAAAGATACAGATGTGTGGATTTCTTCAAGCAACCAGCATTTGATCATCCTTCT 234
Query 275 ATGAAGAATCACACATACCATTACAAGATGCGTCTAATCTGGAAAGAAATGGGAGAAAGA 334
||||||||||| |||||||||||||||||||||| ||| ||||||| ||| ||||||||
Sbjct 235 ATGAAGAATCATACATACCATTACAAGATGCGTCCAATATGGAAAGGAATCAGAGAAAGA 294
Query 335 GAGACAAACAATACTGCTTTTGGTTACTTATGGGAGAATGGTGTGGGTTGTCCCATTGGT 394
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 AAGACAAACAATACCGGTTTTGGTTACTTATGGGAGAATGGTGTGGGTTGTCCCATTGGT 354
Query 395 ACAGTCCCTATGCAAAGAGTCACCAAAGACGATCTTTTAAGATTAGACTCATTTGGTGAT 454
|| |||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 355 ACGGTCCCTATTCAAAGAGTCACCAAAGACGATCTTTTGAGATTAGACTCATTTGTTGAT 414
Query 455 AATCATAAACCCTGTGGTTCTTGGAACACTACCACTTATGATCCTAATAATG-TTGTTCA 513
|||||||||||| |||||||||||||||||||||||| | ||| ||||||| || ||||
Sbjct 415 AATCATAAACCCCGTGGTTCTTGGAACACTACCACTTTTAATCTTAATAATCCTT-TTCA 473
Query 514 TTACAACCAACATCGTTTTGCGGTAGCTCGAACGAAGAACATAGGAAGGAGGTTCAATGG 573
| | ||||||||| || ||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 474 TCCCGACCAACATCATTATGCGGTAGCTCGAACGAAGGACATAGGAAGGAGGTTCCATGG 533
Query 574 AGCAACGATGGAACTTTGTATAACCGCTCCTAAGGTTAAGCCAACCCAATTCAGTGCTTC 633
||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 534 AGCAACGATGGGACTTTGTATAACGGCTCCTAAGGTTAAGCCAACCCAATTCAGTAATTC 593
Query 634 AAGACTTCACATTCAGATGGGAAGGGATTTCCTCCAAGCCGGTTTGACTGTAAATCCAGT 693
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 TAGACTTCACATTCAGATGGGAAGGGATTTCCTCCAAGCCGGTTTGACTGTAAATCCAGT 653
Query 694 ATTGTACAAGGACAAGCAACCTCGAACTTTTGTCTATACAGATTCAAATGGAAACTCATG 753
|||||||||||||||||||||||| |||||||| |||||| | |||||||||| |||||
Sbjct 654 ATTGTACAAGGACAAGCAACCTCGGACTTTTGTTTATACATCTGCAAATGGAAAATCATG 713
Query 754 TTACAATACCAACTGCAACGTTGGAAT-AGTA-CTTATTCGTCATGACATTG-CACTTGG 810
|||||||| |||||||||||||||||| | || | || ||||||||| || |||||||
Sbjct 714 TTACAATAGCAACTGCAACGTTGGAATGA-TAGCC-ATCCGTCATGAC-TTAACACTTGG 770
Query 811 TATGTCATTGGTGCCAGTGTCTACTCGTGGTGATTGGCCAAAATACTATACAAAGATCGG 870
| || ||||| ||||||||||||||||||| | |||||| |||||||||||||||||
Sbjct 771 TCTGGCATTGCAGCCAGTGTCTACTCGTGGTTCTAGGCCAAGTTACTATACAAAGATCGG 830
Query 871 TCTAGTCAAGGAGAGAAAAAATGGAAATTGGTGGTTGCAAATGGGTGGTAATTATGAGCC 930
||||||||| || |||||| ||||||||||| ||||| |||||||||||||||||||||
Sbjct 831 TCTAGTCAAAGACAGAAAATCTGGAAATTGGTTGTTGCGAATGGGTGGTAATTATGAGCC 890
Query 931 AGTAAATATTGGATTTTGGCCGGGGCATAGGTTTCAACAAAGCTATGGAAATTATGTCGA 990
| ||||||||||| ||||||| |||||||||||||||||| ||| |||| ||| ||||||
Sbjct 891 AATAAATATTGGACTTTGGCCAGGGCATAGGTTTCAACAAGGCTTTGGAGATTTTGTCGA 950
Query 991 GTGGGGTGGAGAAGTGTACAGGGCATCA-CTGCCGAGTCCTCAAATGGGATATGGATATT 1049
||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||
Sbjct 951 GTGGGGTGGAGAAGTGTACAGCGCAT-ATCTGCCGAGTCCTCAAATGGGATATGGATATT 1009
Query 1050 TTCCAATTCAGGATAAAAATTATGATGCATATATCCAACACATATCCATACGCGACCGTT 1109
| |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1010 TCCCAATTCAGGATAAAAGTTATGATGCATATATCCAACACATATCCATACTCGACCGTA 1069
Query 1110 ATTATAACATAGACCGCAATGTGGACTATCTCGAAGACTATTCAGACGATAATCGAGGCT 1169
||||||||||||||||||||||||||||||||||||||| ||| ||| | ||||||||||
Sbjct 1070 ATTATAACATAGACCGCAATGTGGACTATCTCGAAGACTTTTCGGACAACAATCGAGGCT 1129
Query 1170 ATCAAGTGATAGACACCCGAGATCCTATACATAG-GGCCGGTCATATAATCTTTTATGGT 1228
||||||||||||||||||||||||||| |||||| ||| ||||| |||||||||||||||
Sbjct 1130 ATCAAGTGATAGACACCCGAGATCCTAGACATAGCGGC-GGTCACATAATCTTTTATGGT 1188
Query 1229 GGTCCAGGAAATATCT 1244
||||| ||||||||||
Sbjct 1189 GGTCCGGGAAATATCT 1204
> Ahg890803 jgi|Araly1|890803|Al_scaffold_0007_2789
Length=1212
Score = 1182 bits (640), Expect = 0.0
Identities = 1042/1232 (85%), Gaps = 44/1232 (4%)
Strand=Plus/Plus
Query 35 ATGGAAGTGAGAGGCCCAGTGATATGGATGTTCTTAATGTGTTGCATATTTGGTCACTTA 94
||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||
Sbjct 1 ATGGAAGTGAGAGGCCCAGTGATATGGATGTTCTTAATGTGTTGCATCTTTGGTAACATA 60
Query 95 ATTGTAAGTCATAAGAATGACTTAGTGGAAGCCAAAAGCTTTTCAAAATCTGAAGATTTG 154
|||||||||||| | |||||||| ||||||||||| |||||||| ||||||||||||||
Sbjct 61 ATTGTAAGTCATCACAATGACTTCGTGGAAGCCAAGAGCTTTTCTAAATCTGAAGATTTA 120
Query 155 GAAATCGAGAAGAGACTACAGACTATCAACAAACCCGCCGTCAAGAACATCAAGACCATA 214
|||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||
Sbjct 121 GAAATCGAGAAGAGACTAAAGACTATCAACAAACCCGCCGTCAAGATCATCAAGACTATA 180
Query 215 GATGGAGAAATATACGGATGTGTGGATTTCTTCAAGCAACCAGCATTTGATCATCCTTCT 274
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GATGGAGAAAGATACGGATGTGTGGATTTCTTCAAGCAACCAGCATTTGATCATCCTTCT 240
Query 275 ATGAAGAATCACACATACCATTACAAGATGCGTCTAATCTGGAAAGAAATGGGAGAAAGA 334
||||||||||| |||||||||||||||||||||| ||| ||||||| |||| ||||||||
Sbjct 241 ATGAAGAATCATACATACCATTACAAGATGCGTCCAATATGGAAAGGAATGAGAGAAAGA 300
Query 335 GAGACAAACAATACTGCTTTTGGTTACTTATGGGAGAATGGTGTGGGTTGTCCCATTGGT 394
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AAGACAAACAATACCGGTTTTGGTTACTTATGGGAGAATGGTGTGGGTTGTCCCATTGGT 360
Query 395 ACAGTCCCTATGCAAAGAGTCACCAAAGACGATCTTTTAAGATTAGACTCATTTGGTGAT 454
|| ||||| || ||||||||||| |||||||||||||| ||||| ||||||||||| |||
Sbjct 361 ACCGTCCCCATACAAAGAGTCACTAAAGACGATCTTTTGAGATTCGACTCATTTGGCGAT 420
Query 455 AATCATAAACCCTGTGGTTCTTGGAACACTACCACTTATGATCCTAATAATGTTGTTCAT 514
|||||||||||| |||| ||||||||||||||||||||||||||||||| | | |||||
Sbjct 421 AATCATAAACCCCGTGGCTCTTGGAACACTACCACTTATGATCCTAATAGTCCTCTTCAT 480
Query 515 TACAACCAACATCGTTTTGCGGTAGCTCGAACGAA-GAAC-ATAGGAAGGAGGTTCAATG 572
| ||||||||| || |||||| ||||| ||| | | | | || ||||||||||
Sbjct 481 CCCGACCAACATCATTATGCGGTGGCTCGGACGTTTGCGCCAGACAAA--AGGTTCAATG 538
Query 573 GAGCAACGATGGAACTTTGTATAACCGCTCCTAAGGTTAAGCCAACCCAATTCAGTGCTT 632
||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 539 GAGCAACAATGGAACTTTGTATAACCGCTCCTGCGGTTAAACCAACCCAATTCAGTGCTT 598
Query 633 CAAGACTTCACATTCAGATGGGAAGGGATTTCCTCCAAGCCGGTTTGACTGTAAATCCAG 692
| |||||||||||||| | ||||| |||||| ||||| ||||||| |||||||||||||
Sbjct 599 CTCGACTTCACATTCAGCTTGGAAGTGATTTCATCCAAACCGGTTTTACTGTAAATCCAG 658
Query 693 TATTGTACAAGGACAAGC-AACCTCGAACTTTTGTCTATACAGATTCAAATGG-AAACTC 750
|||||||||||||| || ||||||| |||| |||||| || ||||| ||| ||| ||
Sbjct 659 AATTGTACAAGGACA-GCCAACCTCGGACTTACGTCTATGCAAATTCAGGTGGTAAA-TC 716
Query 751 ATGTTACAATACCAACTGCAACGTTGGAAT-AGTACTTATTCGTCATGACATTGCACTTG 809
||||||||||| ||||||| |||||||||| | |||| ||||||| || || ||||||
Sbjct 717 ATGTTACAATAGCAACTGCGACGTTGGAATGA-TACTCGTTCGTCAAGATTTTCCACTTG 775
Query 810 GTATGTCATTGGTGCCAGTGTCTACTCGTGGTGATTGGCCAAAA-T-ACTATACAAAGAT 867
|| || |||| |||||| ||| |||||||| | | |||| | | ||| || |
Sbjct 776 GTTTGGCATTAAAGCCAGTCTCTGTTCGTGGTGCTAAG--AAAAGTGAATATGGAATCTT 833
Query 868 CGGTCTAGTCAAGGA-GAGAAAAAATGGAAATTGGTGGTTGCAAATGGGTGGTAATTATG 926
||||||| ||||||| || ||||||||||||||||||||||||| | |||| | | |
Sbjct 834 CGGTCTAATCAAGGACGA-AAAAAATGGAAATTGGTGGTTGCAATTTGGTG--A-TGCGG 889
Query 927 -AGCCAGTAAATATTGGATTTTGGCCGGGGCA-TAGGTTTCAACAAAGCTATGGAAAT-T 983
|| || |||| | |||||||||||| | | ||||||||| ||||||| ||||||| |
Sbjct 890 CAG--AGGAAAT-T-GGATTTTGGCCGTCG-AGTAGGTTTCATCAAAGCTCTGGAAATCT 944
Query 984 ATGTCGAGTGGGGTGGAGAAGTGTACAGGGCATCACTGCCGAGTCCTCAAATGGGATATG 1043
|||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||
Sbjct 945 C-GTCGAGTGGGGTGGAGAAGTGTACAGCGCCTCACTGCCGAGTCCTGAAATGGGATATG 1003
Query 1044 GATATTTTCCAATTCAGGATAAAAATTATGATGCATATATCCAACACATATCCATACGCG 1103
||||||||| ||| |||| ||| |||||||||||| ||| |||||| ||| |
Sbjct 1004 GATATTTTCTTGCTCACGATATGGTTTACGATGCATATATCAAACGGATATCCGTACTTG 1063
Query 1104 ACCGTTATTA-TAACATAGACCGCA-ATGTGGACTAT-CTCGAAGACTAT-TCAGACGAT 1159
|| ||| ||| |||||| ||||||| | ||||| ||| | ||| | ||| | ||| |
Sbjct 1064 ACGGTT-TTAATAACATTGACCGCAGA-GTGGAATATACA-GAAAAATATGTG-GACAAC 1119
Query 1160 AATCGA-GGCTATCAAGTGATAGAC-ACC-CGAGA-T-CCTA-TACA-TAGGGCCGGTCA 1212
| || | ||||| ||||| || ||| || | | | | || | ||| || |||||||||
Sbjct 1120 ACTC-ATGGCTACCAAGTTATGGACGACTACAAAAATTCCAAATACCCTAAGGCCGGTCA 1178
Query 1213 TATAATCTTTTATGGTGGTCCAGGAAATATCT 1244
|||||| |||| ||||||||| ||||||||||
Sbjct 1179 TATAATATTTTTTGGTGGTCCGGGAAATATCT 1210
> Ahg890805 jgi|Araly1|890805|Al_scaffold_0007_2791
Length=1212
Score = 1122 bits (607), Expect = 0.0
Identities = 1035/1236 (84%), Gaps = 52/1236 (4%)
Strand=Plus/Plus
Query 35 ATGGAAGTGAGAGGCCCAGTGATATGGATGTTCTTAATGTGTTGCATATTTGGTCACTTA 94
|||||||||||||| |||||||| ||||||||||||||| ||||||| ||||||||| ||
Sbjct 1 ATGGAAGTGAGAGGTCCAGTGATGTGGATGTTCTTAATGAGTTGCATCTTTGGTCACATA 60
Query 95 ATTGTAAGTCATAAGAATGACTTAGTGGAAGCCAAAAGCTTTTCAAAATCTGAAGATTTG 154
||| ||||||||| |||| ||| || |||||||| |||||||| |||| |||||||||
Sbjct 61 ATTACAAGTCATAACAATGTCTTCGTAGAAGCCAAGAGCTTTTCTAAATTTGAAGATTTA 120
Query 155 GAAATCGAGAAGAGACTACAGACTATCAACAAACCCGCCGTCAAGAACATCAAGACCATA 214
|||||||||||||||||| || |||||||||||||||| ||||||| ||||||||| |||
Sbjct 121 GAAATCGAGAAGAGACTAAAGTCTATCAACAAACCCGCTGTCAAGATCATCAAGACTATA 180
Query 215 GATGGAGAAATATACGGATGTGTGGATTTCTTCAAGCAACCAGCATTTGATCATCCTTCT 274
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 GATGGAGAAAGATACGGATGTGTGGACTTCTTCAAGCAACCAGCATTTGATCATCCTTCT 240
Query 275 ATG-AAGAATCACACATACCATTACAAGATGCGTCTAATCTGGAAAGAAATGGGAGAAAG 333
||| || |||||||||||||||||||||||||||| || ||||||| |||| |||||||
Sbjct 241 ATGCAA-AATCACACATACCATTACAAGATGCGTCCGATATGGAAAGGAATGAGAGAAAG 299
Query 334 -AGAGACAAACAATACTGCTTTTGGTTACTTATGGGAGAATGGTGTGGGTTGTCCCATTG 392
|| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 300 AAG-GACAAACAATACCGGTTTTGGTTACTTATGGGAGAATGGTGTGGGTTGTCCCATTG 358
Query 393 GTACAGTCCCTATGCAAAGAGTCACCAAAGACGATCTTTTAAGATTAGACTCATTTGGTG 452
|||| ||||| || ||||||||||| |||||||||||| | ||||| ||||||||||| |
Sbjct 359 GTACCGTCCCCATACAAAGAGTCACTAAAGACGATCTTCTGAGATTGGACTCATTTGGCG 418
Query 453 ATAATCATAAACCCTGTGGTTCTTGGAACACTACCACTTATGATCCTAATAATGTTGTTC 512
|||||||||||||| | || |||||||||||||||||| || || |||||| ||| | |
Sbjct 419 ATAATCATAAACCCCGAGGCTCTTGGAACACTACCACTGATAATTCTAATAGTGTCCTCC 478
Query 513 ATTACAACCAACATCGTTTTGCGGTAGCTCGAACGA--AGAAC-ATAGGAAGGAGGTTCA 569
|| || || |||||| || |||||| ||||| | | ||| | | | || |||||||
Sbjct 479 ATAACGACAAACATCATTATGCGGTGGCTCGGTC-ATTAGACCCA-ACCCAG-AGGTTCA 535
Query 570 ATGGAGCAACGATGGAACTTTGTATAACCGCTCCTAAGGTTAAGCCAACCCAATTCAGTG 629
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 536 ATGGAGCAACAATGGAACTTTGTATAACCGCTCCTAAGGTTAAGCCAGCCCAATTCAGTG 595
Query 630 CTTCAAGACTTCACATTCAGATGGGAAGGGATTTCCTCCAAGCCGGTTTGACTGTAAATC 689
|||| |||||||||||||||| |||| ||||||| ||||| ||||||| || |||||||
Sbjct 596 CTTCTCGACTTCACATTCAGATTGGAAAGGATTTCATCCAAACCGGTTTCACCGTAAATC 655
Query 690 CAGTATTGTACAAGGACAAGC-AACCTCGAACTTTTGTCTATACAGATTCAAATGGAAAC 748
||| |||||||||||||| || |||| || ||||| ||||||||| ||||| ||||||
Sbjct 656 CAGCATTGTACAAGGACA-GCCAACCCCGGACTTTCGTCTATACAAATTCAGGTGGAAAA 714
Query 749 TCATGTTACAATACCAACTGCAACGTTGGAATAGT-ACTTATTCGTCATGACATTGC-AC 806
||||||||||||| ||||||||||||||| || || ||| ||||||| || || | ||
Sbjct 715 TCATGTTACAATAGCAACTGCAACGTTGGGAT-GTTACTCGTTCGTCAAGAT-TTCCCAC 772
Query 807 TTGGTATGTCATTGGTGCCAGTGTCTACTC-GTGGTGATTGGCCAAAAT-ACTATACAAA 864
|||||| | | ||| |||||||||||| || | |||| | | || | ||||| ||
Sbjct 773 TTGGTACGGCGTTGTTGCCAGTGTCTA-TCCGCGGTGCTAAGATAAG-TCACTATGGAAT 830
Query 865 GATCGGTCTAGTCAAGGA-GAGAAAAAATGGAAATTGGTGGTTGCAAATGGGTGGTAATT 923
|||||||| ||||||| || |||||||||||| |||||||||||| | |||| ||||
Sbjct 831 CTTCGGTCTAATCAAGGACGA-AAAAAATGGAAACTGGTGGTTGCAATTTGGTGATAATG 889
Query 924 ATGAGCCAGTAAATATTGGATTTTGGCCGGGGCA-TAGGTTTCAACAAAGCTATGGAAAT 982
|| || || | | |||||||||||| | | ||||||||| ||||||| |||||||
Sbjct 890 CGGA---AG-AAGT-T-GGATTTTGGCCGTCG-AGTAGGTTTCATCAAAGCTCTGGAAAT 942
Query 983 TATGTCGAGTGGGGTGGAGAAGTGTACAGGGCATCAC-TGCCGAGTCCTCAAATGGGATA 1041
|| ||||||||||| |||||||||||||| |||| || ||||||||||| ||||||||||
Sbjct 943 TACGTCGAGTGGGGCGGAGAAGTGTACAGTGCAT-ACCTGCCGAGTCCTGAAATGGGATA 1001
Query 1042 TGGATATTTTCCAATTCAGGATAAAAATTATGATGCATATATCCAACACATATCCATACG 1101
|||| ||| ||| || |||||| ||| |||||||||||| ||| ||| || |||
Sbjct 1002 TGGACATTATCCTGTTGAGGATATGCGTTACGATGCATATATCAAACGTATAACCGTACT 1061
Query 1102 CGACCGTTATTA-TAACATAGACCGCA-ATGTGG-ACTATCTCGAAGACTATTCA-G-AC 1156
|||| ||| ||| | |||| ||||||| | |||| | ||||||||||| |||| | ||
Sbjct 1062 CGACGGTT-TTAATTACATTGACCGCAGA-GTGGCA-TATCTCGAAGA--ATTCGCGGAC 1116
Query 1157 GATAATCGAGGCTATCA-AGTGATAGAC-ACC-CGAG-A-TC-CTA-TACA-TAGGGCCG 1208
| |||| ||||| || ||| || ||| || | || | || | | ||| || |||||
Sbjct 1117 AACGATCGGGGCTA-CACAGTAATTGACGACTAC-AGCACTCACAAATACCCTAAGGCCG 1174
Query 1209 GTCATATAATCTTTTATGGTGGTCCAGGAAATATCT 1244
||||||||||||||| ||||||||| ||||||||||
Sbjct 1175 GTCATATAATCTTTTTTGGTGGTCCGGGAAATATCT 1210
> Ahg946833 jgi|Araly1|946833|scaffold_703062.1
Length=850
Score = 281 bits (152), Expect = 7e-75
Identities = 234/273 (86%), Gaps = 7/273 (3%)
Strand=Plus/Plus
Query 927 AGCCAGTA-AATATTGGATTTTGGCCGGGGCATAGGTTTCAACAAAGCTATGGAAATTAT 985
|||||||| || |||||| ||||||||| | ||||||||||||||||| |||| ||| |
Sbjct 580 AGCCAGTAGAA-ATTGGACTTTGGCCGGAACGTAGGTTTCAACAAAGCTTTGGAGATTTT 638
Query 986 GTCGAGTGGGGTGGAGAAGTGTACAGGGCATCACTGCCGAGTCCTCAAATGGGATATGGA 1045
|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 639 GTCGAGTGGGGTGGAGAAGTATACACCGCATCACTGCCGAGTCCTCAAATGGGATATGGA 698
Query 1046 TATTTTCCAATTCAGGATAAAAATTATGATGCATATATCCAACACATATCCATACGCGAC 1105
||||| |||||||| ||| | ||||||||||||||| |||| ||| ||||| ||||
Sbjct 699 TATTTCCCAATTCAAAATATCAGGTATGATGCATATATCGAACAGATAGCCATATTCGAC 758
Query 1106 CGTTA-TTATAACATAGACCGCAATGTGGACTATCTCGAAGACTATTCAGAC-GATAATC 1163
| || ||||||||||||||||||| |||||||||| |||| || ||| ||| | ||||
Sbjct 759 -GATAATTATAACATAGACCGCAATTTGGACTATCTTGAAGTCTTTTCTGACAGC-AATC 816
Query 1164 GAGGCTATCAAGTGATAGACACCCGAGATCCTA 1196
| || |||| |||||||||||| ||||||||||
Sbjct 817 G-GGATATCGAGTGATAGACACGCGAGATCCTA 848
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46548081657
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5